Wall clock time and date at job start Fri Apr 10 2020 22:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38224 * 120.42032 * 2 1 4 4 N 1.31855 * 120.76626 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.72390 * 359.70381 * 4 3 2 6 6 C 1.38184 * 120.76421 * 0.57976 * 5 4 3 7 7 C 1.50701 * 120.41726 * 179.70290 * 6 5 4 8 8 H 1.09000 * 109.46648 * 159.72711 * 7 6 5 9 9 C 1.53003 * 109.47202 * 279.72753 * 7 6 5 10 10 N 1.46902 * 109.46943 * 39.72889 * 7 6 5 11 11 C 1.46897 * 110.99765 * 153.98889 * 10 7 6 12 12 H 1.09003 * 109.47345 * 37.30559 * 11 10 7 13 13 C 1.52996 * 109.47283 * 157.30571 * 11 10 7 14 14 C 1.50700 * 109.46915 * 295.21724 * 13 11 10 15 15 H 1.07999 * 119.99987 * 4.51299 * 14 13 11 16 16 C 1.37876 * 120.00211 * 184.50192 * 14 13 11 17 17 N 1.31519 * 119.99867 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00393 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47170 * 90.00160 * 18 16 14 20 20 H 1.48502 * 109.47420 * 210.00543 * 18 16 14 21 21 H 1.48502 * 109.47142 * 330.00425 * 18 16 14 22 22 C 1.50701 * 109.47232 * 277.30568 * 11 10 7 23 23 C 1.38236 * 119.99926 * 319.72445 * 22 11 10 24 24 C 1.38236 * 120.00175 * 179.78685 * 23 22 11 25 25 C 1.38238 * 119.99629 * 0.44571 * 24 23 22 26 26 C 1.38230 * 120.00038 * 359.81045 * 25 24 23 27 27 C 1.38233 * 120.00114 * 140.00234 * 22 11 10 28 28 C 1.38625 * 120.41941 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47704 * 269.97941 * 1 2 3 30 30 H 1.09003 * 109.47119 * 29.98638 * 1 2 3 31 31 H 1.09008 * 109.47045 * 149.97849 * 1 2 3 32 32 H 1.08002 * 119.61709 * 0.04047 * 3 2 1 33 33 H 1.07997 * 119.61870 * 180.31532 * 5 4 3 34 34 H 1.08998 * 109.46557 * 176.33237 * 9 7 6 35 35 H 1.08995 * 109.46739 * 296.33009 * 9 7 6 36 36 H 1.08996 * 109.47147 * 56.33547 * 9 7 6 37 37 H 1.00906 * 110.99845 * 30.03839 * 10 7 6 38 38 H 1.09001 * 109.47577 * 55.21664 * 13 11 10 39 39 H 1.08997 * 109.47640 * 175.21981 * 13 11 10 40 40 H 0.97008 * 119.99991 * 179.97438 * 17 16 14 41 41 H 1.07995 * 119.99946 * 0.02562 * 23 22 11 42 42 H 1.08001 * 120.00110 * 180.27472 * 24 23 22 43 43 H 1.08002 * 119.99889 * 179.83282 * 25 24 23 44 44 H 1.08005 * 120.00086 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00368 * 359.97438 * 27 22 11 46 46 H 1.07997 * 120.79207 * 359.96372 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0048 6 6 3.5948 -1.1471 -0.0009 7 6 4.4027 -2.4192 -0.0016 8 1 3.7824 -3.2437 0.3500 9 6 4.8870 -2.7151 -1.4225 10 7 5.5612 -2.2640 0.8883 11 6 6.0073 -3.5653 1.4034 12 1 5.9052 -4.3194 0.6230 13 6 7.4732 -3.4692 1.8311 14 6 8.3321 -3.1978 0.6229 15 1 7.8723 -3.0309 -0.3400 16 6 9.7048 -3.1623 0.7468 17 7 10.2647 -3.3658 1.9194 18 14 10.7694 -2.8251 -0.7505 19 1 10.9920 -1.3626 -0.8805 20 1 12.0763 -3.5127 -0.5938 21 1 10.0864 -3.3319 -1.9678 22 6 5.1624 -3.9525 2.5897 23 6 4.7980 -2.9971 3.5200 24 6 4.0192 -3.3513 4.6058 25 6 3.6126 -4.6628 4.7662 26 6 3.9814 -5.6191 3.8388 27 6 4.7565 -5.2640 2.7506 28 6 2.2089 -1.1954 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6675 2.1276 0.0007 33 1 5.3046 0.1285 0.0093 34 1 5.5250 -3.5988 -1.4121 35 1 4.0281 -2.8947 -2.0690 36 1 5.4529 -1.8628 -1.7983 37 1 5.3542 -1.6277 1.6436 38 1 7.5897 -2.6577 2.5494 39 1 7.7798 -4.4085 2.2912 40 1 11.2305 -3.3412 2.0065 41 1 5.1185 -1.9733 3.3965 42 1 3.7309 -2.6041 5.3303 43 1 3.0064 -4.9401 5.6160 44 1 3.6640 -6.6438 3.9643 45 1 5.0445 -6.0113 2.0260 46 1 1.6888 -2.1419 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184419389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:25:35 Heat of formation + Delta-G solvation = 32.374440 kcal Electronic energy + Delta-G solvation = -25407.346153 eV Core-core repulsion = 22067.316486 eV Total energy + Delta-G solvation = -3340.029667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42216 -40.44004 -37.97557 -35.46980 -34.47932 -34.08474 -31.83805 -31.41104 -30.49388 -29.51238 -28.11649 -26.37955 -24.68990 -23.88954 -23.66837 -23.26189 -21.27511 -20.87322 -18.64897 -17.94433 -17.68160 -17.61380 -16.69928 -16.34153 -16.05650 -15.85953 -15.44647 -15.15454 -14.81073 -14.53271 -14.35135 -14.22395 -14.08418 -13.96366 -13.73093 -13.62363 -13.45743 -13.31284 -13.19034 -12.87372 -12.83928 -12.57807 -12.39367 -12.31720 -12.10564 -11.93936 -11.67630 -11.46033 -11.11125 -10.54584 -10.47829 -10.34509 -9.80419 -9.72228 -9.53159 -9.18270 -8.08004 -6.12891 0.15966 0.33546 0.49480 0.51935 1.42644 1.44217 1.54008 2.48306 2.82687 2.91233 3.20925 3.32539 3.48970 3.78784 3.91905 3.96694 4.00009 4.08570 4.10089 4.17657 4.29742 4.34822 4.35855 4.45291 4.56813 4.67551 4.72543 4.77092 4.84866 4.88684 4.89871 4.97683 5.06200 5.15256 5.17282 5.20452 5.30384 5.33541 5.40746 5.51467 5.59265 5.61506 5.63401 5.73163 5.82750 5.91212 6.15328 6.29865 6.44451 6.58908 7.01584 7.06020 7.53024 9.04167 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.009649 B = 0.005059 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.181761 B = 5533.285657 C = 7621.711010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.133 4.133 3 C 0.080 3.920 4 N -0.507 5.507 5 C 0.091 3.909 6 C -0.129 4.129 7 C 0.136 3.864 8 H 0.053 0.947 9 C -0.129 4.129 10 N -0.664 5.664 11 C 0.147 3.853 12 H 0.072 0.928 13 C 0.053 3.947 14 C -0.494 4.494 15 H 0.065 0.935 16 C -0.005 4.005 17 N -0.941 5.941 18 Si 0.955 3.045 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.113 4.113 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.119 4.119 27 C -0.131 4.131 28 C -0.077 4.077 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.334 0.666 38 H -0.015 1.015 39 H -0.010 1.010 40 H 0.257 0.743 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.122 0.878 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.154 1.375 -0.706 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.135 4.135 3 C -0.078 4.078 4 N -0.215 5.215 5 C -0.066 4.066 6 C -0.132 4.132 7 C 0.026 3.974 8 H 0.071 0.929 9 C -0.187 4.187 10 N -0.296 5.296 11 C 0.037 3.963 12 H 0.090 0.910 13 C 0.015 3.985 14 C -0.533 4.533 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.584 5.584 18 Si 0.781 3.219 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.188 1.188 22 C -0.115 4.115 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.137 4.137 27 C -0.149 4.149 28 C -0.103 4.103 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.193 0.807 33 H 0.163 0.837 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.154 0.846 38 H 0.003 0.997 39 H 0.008 0.992 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.164 0.836 45 H 0.140 0.860 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.073 2.194 -1.180 22.213 hybrid contribution 0.483 -0.739 0.178 0.901 sum -21.590 1.455 -1.002 21.662 Atomic orbital electron populations 1.20773 0.87592 1.04310 1.03507 1.21231 0.99245 0.93159 0.99836 1.23168 0.89488 0.99009 0.96120 1.67707 1.09669 1.31573 1.12572 1.22595 1.00450 0.87532 0.95977 1.20944 0.94956 0.95944 1.01334 1.20310 0.89497 0.92797 0.94792 0.92926 1.21748 1.00843 1.01622 0.94494 1.60704 1.34754 1.11114 1.22996 1.20505 0.93641 0.90320 0.91788 0.90982 1.18855 0.90137 0.94181 0.95292 1.21486 0.90904 1.45121 0.95765 0.91686 1.25841 0.99832 0.96074 0.98302 1.70114 1.10483 1.52692 1.25077 0.85597 0.77977 0.77999 0.80316 1.20614 1.21412 1.18787 1.20971 0.97463 0.94873 0.98182 1.20996 0.99536 0.99037 0.95600 1.21356 0.97734 0.97587 0.97300 1.21441 1.00681 0.92736 0.99876 1.21436 0.97660 1.00655 0.93916 1.21253 0.98891 0.95323 0.99481 1.21630 0.92612 0.99528 0.96553 0.89973 0.89682 0.90364 0.80661 0.83729 0.93028 0.91046 0.93231 0.84551 0.99683 0.99177 0.93390 0.87439 0.84400 0.83330 0.83641 0.85980 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.04 71.24 0.72 -0.45 16 2 C -0.13 -2.54 5.90 -19.78 -0.12 -2.66 16 3 C 0.08 1.78 10.86 84.69 0.92 2.70 16 4 N -0.51 -14.98 10.36 -195.84 -2.03 -17.01 16 5 C 0.09 2.80 10.16 84.67 0.86 3.66 16 6 C -0.13 -3.54 4.73 -19.77 -0.09 -3.63 16 7 C 0.14 4.05 2.64 44.17 0.12 4.17 16 8 H 0.05 1.52 7.43 -2.39 -0.02 1.50 16 9 C -0.13 -3.83 9.41 71.98 0.68 -3.16 16 10 N -0.66 -24.27 5.14 -477.15 -2.45 -26.73 16 11 C 0.15 5.93 2.00 44.17 0.09 6.01 16 12 H 0.07 2.92 7.04 -2.39 -0.02 2.91 16 13 C 0.05 2.77 4.63 29.85 0.14 2.91 16 14 C -0.49 -27.85 8.83 25.60 0.23 -27.63 16 15 H 0.06 3.57 7.74 -2.91 -0.02 3.54 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 17 N -0.94 -58.50 13.29 21.45 0.28 -58.22 16 18 Si 0.95 45.82 29.54 68.60 2.03 47.85 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 21 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 22 C -0.11 -3.97 4.49 -19.87 -0.09 -4.06 16 23 C -0.13 -4.36 9.14 22.27 0.20 -4.16 16 24 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 25 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 26 C -0.12 -2.98 10.05 22.27 0.22 -2.76 16 27 C -0.13 -4.05 9.67 22.27 0.22 -3.84 16 28 C -0.08 -1.69 9.51 22.47 0.21 -1.48 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 31 H 0.08 0.73 8.10 -2.38 -0.02 0.71 16 32 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.15 4.95 7.72 -2.91 -0.02 4.93 16 34 H 0.05 1.67 7.44 -2.39 -0.02 1.66 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.33 12.15 5.64 -89.69 -0.51 11.64 16 38 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 41 H 0.11 3.63 6.52 -2.91 -0.02 3.62 16 42 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 43 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 44 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.12 3.59 8.04 -2.91 -0.02 3.57 16 46 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -69.21 380.28 3.49 -65.72 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.45 Total: 28.41 kcal Atomic # 6 Polarization: -45.23 SS G_CDS: 5.21 Total: -40.02 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -4.20 Total: -101.96 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -69.21 3.49 -65.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184419389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.095 kcal (2) G-P(sol) polarization free energy of solvation -69.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds