Wall clock time and date at job start Fri Apr 10 2020 22:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38231 * 120.41821 * 2 1 4 4 N 1.31851 * 120.76229 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72792 * 359.70812 * 4 3 2 6 6 C 1.38176 * 120.76182 * 0.57725 * 5 4 3 7 7 C 1.50701 * 120.41971 * 179.70327 * 6 5 4 8 8 H 1.08994 * 109.47522 * 159.72749 * 7 6 5 9 9 C 1.52995 * 109.47187 * 279.72974 * 7 6 5 10 10 N 1.46908 * 109.46745 * 39.72767 * 7 6 5 11 11 C 1.46900 * 110.99827 * 155.00067 * 10 7 6 12 12 H 1.08999 * 109.46853 * 325.00087 * 11 10 7 13 13 C 1.52992 * 109.47083 * 205.00117 * 11 10 7 14 14 C 1.50700 * 109.47257 * 64.99908 * 13 11 10 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 11 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 11 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47081 * 119.99727 * 18 16 14 21 21 H 1.48501 * 109.47213 * 240.00099 * 18 16 14 22 22 C 1.50703 * 109.46895 * 85.00065 * 11 10 7 23 23 C 1.38230 * 120.00102 * 39.72780 * 22 11 10 24 24 C 1.38238 * 119.99939 * 179.78898 * 23 22 11 25 25 C 1.38233 * 119.99967 * 0.43452 * 24 23 22 26 26 C 1.38244 * 119.99937 * 359.82021 * 25 24 23 27 27 C 1.38231 * 119.99897 * 359.97027 * 26 25 24 28 28 C 1.38623 * 120.42091 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46892 * 269.97451 * 1 2 3 30 30 H 1.08995 * 109.47230 * 29.97961 * 1 2 3 31 31 H 1.08998 * 109.46987 * 149.98216 * 1 2 3 32 32 H 1.08007 * 119.61560 * 0.04464 * 3 2 1 33 33 H 1.07996 * 119.61831 * 180.31318 * 5 4 3 34 34 H 1.08997 * 109.47216 * 179.97438 * 9 7 6 35 35 H 1.08999 * 109.47678 * 299.99963 * 9 7 6 36 36 H 1.09007 * 109.47219 * 59.99755 * 9 7 6 37 37 H 1.00896 * 110.99630 * 278.95319 * 10 7 6 38 38 H 1.09004 * 109.47330 * 304.99931 * 13 11 10 39 39 H 1.08997 * 109.47279 * 185.00418 * 13 11 10 40 40 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 41 41 H 1.07998 * 119.99864 * 359.97438 * 23 22 11 42 42 H 1.08002 * 119.99982 * 180.27780 * 24 23 22 43 43 H 1.07994 * 120.00536 * 179.83522 * 25 24 23 44 44 H 1.07998 * 120.00085 * 179.97438 * 26 25 24 45 45 H 1.07995 * 119.99905 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.79282 * 359.96348 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0824 0.0047 6 6 3.5949 -1.1470 -0.0011 7 6 4.4027 -2.4192 -0.0018 8 1 3.7825 -3.2437 0.3497 9 6 4.8870 -2.7150 -1.4226 10 7 5.5613 -2.2640 0.8881 11 6 6.0223 -3.5675 1.3842 12 1 5.1647 -4.2237 1.5326 13 6 6.7549 -3.3770 2.7138 14 6 5.7865 -2.8745 3.7534 15 1 4.7521 -2.7073 3.4918 16 6 6.2214 -2.6273 5.0383 17 7 7.4801 -2.8352 5.3579 18 14 5.0210 -2.0051 6.3271 19 1 3.6736 -1.8603 5.7197 20 1 4.9562 -2.9730 7.4515 21 1 5.4788 -0.6867 6.8346 22 6 6.9593 -4.1850 0.3783 23 6 7.8779 -3.3946 -0.2867 24 6 8.7403 -3.9618 -1.2062 25 6 8.6781 -5.3179 -1.4673 26 6 7.7558 -6.1074 -0.8060 27 6 6.8964 -5.5409 0.1166 28 6 2.2089 -1.1954 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6674 2.1277 0.0007 33 1 5.3047 0.1286 0.0092 34 1 5.4717 -3.6349 -1.4231 35 1 4.0275 -2.8301 -2.0830 36 1 5.5073 -1.8904 -1.7742 37 1 6.3085 -1.7682 0.4256 38 1 7.5586 -2.6519 2.5852 39 1 7.1737 -4.3298 3.0376 40 1 7.7861 -2.6608 6.2618 41 1 7.9238 -2.3345 -0.0857 42 1 9.4611 -3.3450 -1.7226 43 1 9.3500 -5.7606 -2.1875 44 1 7.7069 -7.1668 -1.0102 45 1 6.1756 -6.1577 0.6329 46 1 1.6889 -2.1419 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184419422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:25:40 Heat of formation + Delta-G solvation = 50.567726 kcal Electronic energy + Delta-G solvation = -25397.248684 eV Core-core repulsion = 22058.007937 eV Total energy + Delta-G solvation = -3339.240747 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.24843 -39.31515 -36.73786 -33.86751 -33.45097 -32.27083 -30.71450 -30.21565 -29.23578 -27.66814 -27.17671 -24.62675 -23.61969 -22.88686 -22.28328 -21.87400 -20.04577 -19.73177 -17.12313 -16.75167 -16.34797 -16.07131 -15.23007 -14.85290 -14.80974 -14.34199 -14.23698 -13.90714 -13.80083 -13.38293 -13.09565 -12.95339 -12.87404 -12.81209 -12.52745 -12.47380 -12.40118 -12.18691 -11.96586 -11.53866 -11.24434 -11.06291 -11.00104 -10.77320 -10.59421 -10.50401 -10.18115 -9.67119 -9.42842 -9.21171 -9.01175 -8.65444 -8.58168 -8.27190 -8.20870 -7.80011 -5.89074 -3.87082 1.32028 1.47984 1.66510 1.67555 3.38087 3.45833 3.50728 3.97261 4.07965 4.50746 4.56447 4.67023 4.87659 4.95295 5.11558 5.13457 5.15866 5.19947 5.26745 5.29772 5.31487 5.41199 5.46171 5.48656 5.51058 5.68459 5.78052 5.79412 5.83704 5.85824 5.97777 6.06542 6.09986 6.22783 6.27247 6.33116 6.35449 6.52979 6.72581 6.74433 6.77538 6.91265 6.94758 7.28866 7.46085 7.62972 7.91585 7.96499 8.11553 8.20801 8.54461 9.18044 9.74523 11.22738 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.007741 B = 0.005933 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3616.103922 B = 4718.206920 C = 7523.820906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.143 4.143 3 C 0.085 3.915 4 N -0.484 5.484 5 C 0.115 3.885 6 C -0.100 4.100 7 C 0.125 3.875 8 H 0.085 0.915 9 C -0.178 4.178 10 N -0.651 5.651 11 C 0.131 3.869 12 H 0.075 0.925 13 C 0.042 3.958 14 C -0.488 4.488 15 H 0.059 0.941 16 C 0.052 3.948 17 N -0.901 5.901 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.286 1.286 22 C -0.086 4.086 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.137 4.137 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.077 4.077 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.335 0.665 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.257 0.743 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 -0.541 -16.197 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.145 4.145 3 C -0.073 4.073 4 N -0.191 5.191 5 C -0.042 4.042 6 C -0.102 4.102 7 C 0.014 3.986 8 H 0.103 0.897 9 C -0.237 4.237 10 N -0.281 5.281 11 C 0.021 3.979 12 H 0.093 0.907 13 C 0.005 3.995 14 C -0.526 4.526 15 H 0.077 0.923 16 C -0.147 4.147 17 N -0.542 5.542 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.213 1.213 22 C -0.088 4.088 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.155 4.155 26 C -0.138 4.138 27 C -0.138 4.138 28 C -0.103 4.103 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.155 0.845 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.002 0.431 -15.476 16.992 hybrid contribution -0.450 -0.852 0.125 0.971 sum -7.453 -0.421 -15.351 17.069 Atomic orbital electron populations 1.20680 0.90637 1.02616 1.02463 1.20823 0.97207 0.94251 1.02171 1.22544 0.90178 0.97116 0.97430 1.67664 1.08179 1.31512 1.11750 1.22472 1.00234 0.86944 0.94511 1.20858 0.93927 0.96794 0.98627 1.20461 0.93269 0.93565 0.91334 0.89678 1.22600 1.01428 1.02392 0.97241 1.60733 1.08691 1.19791 1.38906 1.21031 0.95173 0.87674 0.93977 0.90650 1.19096 0.95296 0.97072 0.88077 1.21120 0.95834 1.42084 0.93611 0.92262 1.24978 0.94976 0.96228 0.98567 1.69976 1.14698 1.50141 1.19396 0.86597 0.81607 0.78388 0.81744 1.19908 1.21400 1.21265 1.21129 0.97403 0.94201 0.96079 1.20946 0.95912 0.99959 0.96864 1.21051 0.98977 0.95111 0.98481 1.21005 0.99494 0.94145 1.00898 1.21077 0.96234 0.99304 0.97222 1.21067 0.99806 0.94787 0.98094 1.21299 0.93480 0.97992 0.97541 0.91054 0.91500 0.91618 0.83488 0.83048 0.91440 0.92808 0.92577 0.84466 0.96228 0.96227 0.93353 0.86281 0.86643 0.86850 0.86714 0.86314 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.04 36.01 0.36 -0.59 16 2 C -0.14 -1.77 5.90 -104.48 -0.62 -2.39 16 3 C 0.08 1.15 10.86 -17.55 -0.19 0.96 16 4 N -0.48 -7.74 10.36 -13.25 -0.14 -7.88 16 5 C 0.12 1.82 10.50 -17.55 -0.18 1.63 16 6 C -0.10 -1.47 4.97 -104.48 -0.52 -1.99 16 7 C 0.12 1.81 2.81 -68.86 -0.19 1.61 16 8 H 0.09 1.26 7.32 -51.93 -0.38 0.88 16 9 C -0.18 -2.21 8.57 37.16 0.32 -1.89 16 10 N -0.65 -11.23 5.21 -102.17 -0.53 -11.76 16 11 C 0.13 2.47 2.17 -68.87 -0.15 2.32 16 12 H 0.08 1.44 7.29 -51.93 -0.38 1.06 16 13 C 0.04 1.03 4.63 -27.89 -0.13 0.90 16 14 C -0.49 -13.45 8.84 -34.44 -0.30 -13.75 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 16 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 18 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.09 -1.41 2.95 -104.62 -0.31 -1.72 16 23 C -0.12 -1.79 8.39 -39.58 -0.33 -2.13 16 24 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 25 C -0.14 -1.76 10.05 -39.58 -0.40 -2.15 16 26 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 27 C -0.12 -1.80 9.66 -39.58 -0.38 -2.18 16 28 C -0.08 -1.03 9.51 -39.28 -0.37 -1.40 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.06 0.52 8.10 -51.93 -0.42 0.09 16 32 H 0.15 1.59 8.06 -52.48 -0.42 1.16 16 33 H 0.15 2.28 7.26 -52.49 -0.38 1.90 16 34 H 0.07 0.88 5.93 -51.93 -0.31 0.58 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.68 8.13 -51.92 -0.42 0.26 16 37 H 0.33 5.39 5.45 -39.29 -0.21 5.18 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.12 1.76 6.50 -52.49 -0.34 1.41 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.69 8.04 -52.49 -0.42 1.27 16 46 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -31.62 376.10 -10.61 -42.23 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.03 Total: 6.29 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -4.29 Total: -25.35 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.07 Total: -46.08 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.62 -10.61 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184419422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.797 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds