Wall clock time and date at job start Fri Apr 10 2020 22:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38231 * 120.41821 * 2 1 4 4 N 1.31851 * 120.76229 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72792 * 359.70812 * 4 3 2 6 6 C 1.38176 * 120.76182 * 0.57725 * 5 4 3 7 7 C 1.50701 * 120.41971 * 179.70327 * 6 5 4 8 8 H 1.08994 * 109.47522 * 159.72749 * 7 6 5 9 9 C 1.52995 * 109.47187 * 279.72974 * 7 6 5 10 10 N 1.46908 * 109.46745 * 39.72767 * 7 6 5 11 11 C 1.46900 * 110.99827 * 155.00067 * 10 7 6 12 12 H 1.08999 * 109.46853 * 325.00087 * 11 10 7 13 13 C 1.52992 * 109.47083 * 205.00117 * 11 10 7 14 14 C 1.50700 * 109.47257 * 64.99908 * 13 11 10 15 15 H 1.07999 * 119.99988 * 359.97438 * 14 13 11 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 11 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47081 * 119.99727 * 18 16 14 21 21 H 1.48501 * 109.47213 * 240.00099 * 18 16 14 22 22 C 1.50703 * 109.46895 * 85.00065 * 11 10 7 23 23 C 1.38230 * 120.00102 * 39.72780 * 22 11 10 24 24 C 1.38238 * 119.99939 * 179.78898 * 23 22 11 25 25 C 1.38233 * 119.99967 * 0.43452 * 24 23 22 26 26 C 1.38244 * 119.99937 * 359.82021 * 25 24 23 27 27 C 1.38231 * 119.99897 * 359.97027 * 26 25 24 28 28 C 1.38623 * 120.42091 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46892 * 269.97451 * 1 2 3 30 30 H 1.08995 * 109.47230 * 29.97961 * 1 2 3 31 31 H 1.08998 * 109.46987 * 149.98216 * 1 2 3 32 32 H 1.08007 * 119.61560 * 0.04464 * 3 2 1 33 33 H 1.07996 * 119.61831 * 180.31318 * 5 4 3 34 34 H 1.08997 * 109.47216 * 179.97438 * 9 7 6 35 35 H 1.08999 * 109.47678 * 299.99963 * 9 7 6 36 36 H 1.09007 * 109.47219 * 59.99755 * 9 7 6 37 37 H 1.00896 * 110.99630 * 278.95319 * 10 7 6 38 38 H 1.09004 * 109.47330 * 304.99931 * 13 11 10 39 39 H 1.08997 * 109.47279 * 185.00418 * 13 11 10 40 40 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 41 41 H 1.07998 * 119.99864 * 359.97438 * 23 22 11 42 42 H 1.08002 * 119.99982 * 180.27780 * 24 23 22 43 43 H 1.07994 * 120.00536 * 179.83522 * 25 24 23 44 44 H 1.07998 * 120.00085 * 179.97438 * 26 25 24 45 45 H 1.07995 * 119.99905 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.79282 * 359.96348 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0824 0.0047 6 6 3.5949 -1.1470 -0.0011 7 6 4.4027 -2.4192 -0.0018 8 1 3.7825 -3.2437 0.3497 9 6 4.8870 -2.7150 -1.4226 10 7 5.5613 -2.2640 0.8881 11 6 6.0223 -3.5675 1.3842 12 1 5.1647 -4.2237 1.5326 13 6 6.7549 -3.3770 2.7138 14 6 5.7865 -2.8745 3.7534 15 1 4.7521 -2.7073 3.4918 16 6 6.2214 -2.6273 5.0383 17 7 7.4801 -2.8352 5.3579 18 14 5.0210 -2.0051 6.3271 19 1 3.6736 -1.8603 5.7197 20 1 4.9562 -2.9730 7.4515 21 1 5.4788 -0.6867 6.8346 22 6 6.9593 -4.1850 0.3783 23 6 7.8779 -3.3946 -0.2867 24 6 8.7403 -3.9618 -1.2062 25 6 8.6781 -5.3179 -1.4673 26 6 7.7558 -6.1074 -0.8060 27 6 6.8964 -5.5409 0.1166 28 6 2.2089 -1.1954 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6674 2.1277 0.0007 33 1 5.3047 0.1286 0.0092 34 1 5.4717 -3.6349 -1.4231 35 1 4.0275 -2.8301 -2.0830 36 1 5.5073 -1.8904 -1.7742 37 1 6.3085 -1.7682 0.4256 38 1 7.5586 -2.6519 2.5852 39 1 7.1737 -4.3298 3.0376 40 1 7.7861 -2.6608 6.2618 41 1 7.9238 -2.3345 -0.0857 42 1 9.4611 -3.3450 -1.7226 43 1 9.3500 -5.7606 -2.1875 44 1 7.7069 -7.1668 -1.0102 45 1 6.1756 -6.1577 0.6329 46 1 1.6889 -2.1419 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184419422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:25:40 Heat of formation + Delta-G solvation = 33.587580 kcal Electronic energy + Delta-G solvation = -25397.984999 eV Core-core repulsion = 22058.007937 eV Total energy + Delta-G solvation = -3339.977061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35487 -40.48922 -37.95750 -35.50161 -34.43082 -34.06366 -31.82899 -31.34521 -30.67728 -29.18032 -28.09086 -26.28001 -24.81351 -24.01135 -23.62433 -23.17497 -21.18358 -21.12510 -18.64073 -17.93944 -17.69457 -17.43883 -16.70158 -16.27283 -16.04352 -15.90605 -15.26845 -15.03037 -14.95412 -14.45594 -14.35695 -14.16488 -14.00837 -13.94291 -13.90592 -13.70641 -13.54792 -13.30714 -13.18346 -12.93050 -12.81312 -12.59690 -12.34308 -12.29514 -12.12125 -11.93761 -11.72095 -11.47942 -11.11502 -10.51408 -10.47833 -10.31168 -9.75447 -9.64714 -9.45439 -9.13118 -8.10963 -6.15304 0.25091 0.40671 0.54121 0.56559 1.37367 1.39447 1.51071 2.44961 2.87167 2.96172 3.20734 3.34335 3.57510 3.87602 3.93459 4.00242 4.02952 4.12004 4.15942 4.22014 4.25745 4.34171 4.37595 4.41094 4.55182 4.69690 4.71298 4.79404 4.85182 4.89528 4.90793 4.95735 5.04827 5.17276 5.19330 5.21457 5.25058 5.34089 5.42033 5.51461 5.62003 5.64661 5.67116 5.74876 5.87737 5.89198 6.19063 6.29976 6.43491 6.62460 6.98410 7.10902 7.50068 9.01133 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.007741 B = 0.005933 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3616.103922 B = 4718.206920 C = 7523.820906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.137 4.137 3 C 0.072 3.928 4 N -0.510 5.510 5 C 0.092 3.908 6 C -0.110 4.110 7 C 0.132 3.868 8 H 0.081 0.919 9 C -0.164 4.164 10 N -0.668 5.668 11 C 0.149 3.851 12 H 0.068 0.932 13 C 0.052 3.948 14 C -0.492 4.492 15 H 0.056 0.944 16 C -0.003 4.003 17 N -0.938 5.938 18 Si 0.952 3.048 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.286 1.286 22 C -0.103 4.103 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.133 4.133 28 C -0.086 4.086 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.173 0.827 33 H 0.145 0.855 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.338 0.662 38 H -0.010 1.010 39 H -0.011 1.011 40 H 0.258 0.742 41 H 0.113 0.887 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.120 0.880 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 -1.000 -17.850 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 C -0.085 4.085 4 N -0.218 5.218 5 C -0.064 4.064 6 C -0.112 4.112 7 C 0.022 3.978 8 H 0.099 0.901 9 C -0.223 4.223 10 N -0.298 5.298 11 C 0.039 3.961 12 H 0.087 0.913 13 C 0.014 3.986 14 C -0.531 4.531 15 H 0.074 0.926 16 C -0.199 4.199 17 N -0.581 5.581 18 Si 0.778 3.222 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.212 1.212 22 C -0.105 4.105 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.150 4.150 26 C -0.138 4.138 27 C -0.152 4.152 28 C -0.112 4.112 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.190 0.810 33 H 0.162 0.838 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.159 0.841 38 H 0.008 0.992 39 H 0.007 0.993 40 H 0.067 0.933 41 H 0.131 0.869 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.138 0.862 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.598 -0.034 -17.144 19.179 hybrid contribution 0.036 -0.701 0.588 0.915 sum -8.561 -0.734 -16.556 18.653 Atomic orbital electron populations 1.20758 0.87788 1.04335 1.03231 1.21219 0.99190 0.93356 1.00083 1.23072 0.89609 0.98854 0.96967 1.67630 1.09633 1.31828 1.12712 1.22457 1.00226 0.87587 0.96127 1.20903 0.94804 0.96263 0.99266 1.20395 0.91990 0.93500 0.91946 0.90063 1.22438 1.01805 1.02035 0.95987 1.60569 1.09674 1.19082 1.40513 1.20481 0.94784 0.88605 0.92217 0.91340 1.18873 0.94387 0.94257 0.91040 1.21440 0.96045 1.41197 0.94404 0.92595 1.25797 0.96564 0.96719 1.00868 1.70102 1.16500 1.51552 1.19901 0.85592 0.79570 0.77753 0.79251 1.19257 1.20543 1.21197 1.20839 0.97996 0.95010 0.96683 1.21007 0.96425 0.99780 0.97661 1.21361 0.98677 0.96008 0.97775 1.21424 0.99178 0.93735 1.00625 1.21404 0.95388 1.00813 0.96149 1.21215 1.00701 0.94252 0.98999 1.21636 0.92999 0.99445 0.97165 0.90543 0.89605 0.90191 0.80964 0.83776 0.91963 0.91313 0.92487 0.84098 0.99169 0.99258 0.93323 0.86867 0.84261 0.83614 0.83969 0.86190 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.04 71.24 0.72 -0.82 16 2 C -0.14 -3.14 5.90 -19.77 -0.12 -3.25 16 3 C 0.07 1.87 10.86 84.69 0.92 2.79 16 4 N -0.51 -16.38 10.36 -195.84 -2.03 -18.41 16 5 C 0.09 2.98 10.50 84.67 0.89 3.87 16 6 C -0.11 -3.24 4.97 -19.77 -0.10 -3.34 16 7 C 0.13 3.86 2.81 44.17 0.12 3.98 16 8 H 0.08 2.40 7.32 -2.39 -0.02 2.39 16 9 C -0.16 -3.98 8.57 71.98 0.62 -3.36 16 10 N -0.67 -23.96 5.21 -477.16 -2.49 -26.44 16 11 C 0.15 5.87 2.17 44.17 0.10 5.96 16 12 H 0.07 2.73 7.29 -2.39 -0.02 2.71 16 13 C 0.05 2.70 4.63 29.85 0.14 2.84 16 14 C -0.49 -28.07 8.84 25.60 0.23 -27.84 16 15 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 16 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 17 N -0.94 -58.36 13.29 21.45 0.28 -58.08 16 18 Si 0.95 46.47 29.54 68.60 2.03 48.49 16 19 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 C -0.10 -3.46 2.95 -19.87 -0.06 -3.52 16 23 C -0.13 -3.98 8.39 22.27 0.19 -3.79 16 24 C -0.12 -3.03 10.05 22.27 0.22 -2.80 16 25 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 26 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 27 C -0.13 -3.98 9.66 22.27 0.22 -3.76 16 28 C -0.09 -2.19 9.51 22.47 0.21 -1.97 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 0.96 8.09 -2.39 -0.02 0.94 16 31 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 32 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.14 4.63 7.26 -2.91 -0.02 4.61 16 34 H 0.06 1.59 5.93 -2.39 -0.01 1.58 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.36 8.13 -2.38 -0.02 1.34 16 37 H 0.34 11.52 5.45 -89.70 -0.49 11.03 16 38 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 39 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.11 3.49 6.50 -2.91 -0.02 3.47 16 42 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 43 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 44 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.12 3.44 8.04 -2.91 -0.02 3.42 16 46 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -70.33 376.10 3.47 -66.86 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.47 Total: 27.80 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 5.20 Total: -40.23 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -4.23 Total: -102.93 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -70.33 3.47 -66.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184419422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.452 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds