Wall clock time and date at job start Fri Apr 10 2020 22:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99943 * 2 1 4 4 C 1.53000 * 109.47128 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47214 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47446 * 305.00593 * 5 4 3 7 7 N 1.46506 * 109.46808 * 65.00388 * 5 4 3 8 8 C 1.34777 * 119.99873 * 205.00186 * 7 5 4 9 9 O 1.21592 * 119.99797 * 359.97438 * 8 7 5 10 10 N 1.34774 * 119.99902 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99966 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47337 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47022 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46585 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00411 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99862 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99663 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00136 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47008 * 60.00423 * 18 16 14 20 20 H 1.48498 * 109.47024 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47107 * 299.99920 * 18 16 14 22 22 C 1.50701 * 109.47055 * 184.99968 * 5 4 3 23 23 C 1.34510 * 125.79112 * 100.00520 * 22 5 4 24 24 C 1.41374 * 106.84414 * 179.97438 * 23 22 5 25 25 C 1.34512 * 106.84112 * 0.02562 * 24 23 22 26 26 O 1.34299 * 108.41966 * 359.72973 * 25 24 23 27 27 H 1.09000 * 109.47012 * 60.00403 * 1 2 3 28 28 H 1.09006 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47046 * 299.99955 * 1 2 3 30 30 H 1.08994 * 109.47286 * 59.99875 * 3 2 1 31 31 H 1.09003 * 109.47004 * 299.99796 * 3 2 1 32 32 H 1.09004 * 109.46980 * 59.99875 * 4 3 2 33 33 H 1.09003 * 109.47135 * 299.99867 * 4 3 2 34 34 H 0.96995 * 120.00050 * 24.72300 * 7 5 4 35 35 H 0.96999 * 120.00050 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.47136 * 300.00071 * 11 10 8 37 37 H 1.08996 * 109.47174 * 59.99413 * 11 10 8 38 38 H 1.09000 * 109.46757 * 299.99461 * 12 11 10 39 39 H 1.09002 * 109.47113 * 59.99591 * 12 11 10 40 40 H 1.09000 * 109.46771 * 299.99277 * 13 12 11 41 41 H 1.08997 * 109.47271 * 59.99996 * 13 12 11 42 42 H 0.97005 * 120.00108 * 180.02562 * 17 16 14 43 43 H 1.08006 * 126.57688 * 0.03383 * 23 22 5 44 44 H 1.08004 * 126.58074 * 179.97438 * 24 23 22 45 45 H 1.08003 * 125.78992 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7673 3.1536 -0.8422 7 7 3.8227 3.2666 1.2514 8 6 3.8021 4.6134 1.2983 9 8 4.0620 5.2605 0.3023 10 7 3.4933 5.2429 2.4494 11 6 3.4715 6.7068 2.5006 12 6 3.0953 7.1622 3.9120 13 6 3.0719 8.6911 3.9653 14 6 2.7008 9.1396 5.3553 15 1 2.5012 8.4075 6.1237 16 6 2.6161 10.4847 5.6461 17 7 2.8586 11.3763 4.7102 18 14 2.1554 11.0407 7.3689 19 1 3.1552 10.5263 8.3389 20 1 2.1327 12.5246 7.4207 21 1 0.8114 10.5132 7.7164 22 6 5.6552 2.4655 -0.1232 23 6 6.3669 2.6307 -1.2526 24 6 7.7250 2.4324 -0.9137 25 6 7.7620 2.1572 0.4025 26 8 6.5060 2.1841 0.8772 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8574 0.6435 -0.8891 33 1 3.8567 0.6439 0.8909 34 1 3.6117 2.7504 2.0450 35 1 3.2863 4.7266 3.2441 36 1 4.4578 7.0941 2.2450 37 1 2.7374 7.0843 1.7888 38 1 2.1091 6.7750 4.1679 39 1 3.8298 6.7847 4.6234 40 1 4.0579 9.0787 3.7092 41 1 2.3372 9.0682 3.2539 42 1 2.7994 12.3227 4.9148 43 1 5.9759 2.8701 -2.2305 44 1 8.5705 2.4899 -1.5832 45 1 8.6515 1.9542 0.9805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272556292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:56 Heat of formation + Delta-G solvation = -102.067258 kcal Electronic energy + Delta-G solvation = -25069.567765 eV Core-core repulsion = 21280.566254 eV Total energy + Delta-G solvation = -3789.001511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.50867 -41.12746 -39.03927 -37.43222 -36.55349 -35.19825 -33.97314 -33.40875 -32.25051 -30.69769 -28.56928 -27.62158 -25.96742 -24.84419 -22.96242 -22.69833 -22.31041 -22.05265 -21.21143 -19.38540 -18.69330 -18.45823 -17.66811 -17.11539 -16.92935 -16.79868 -16.78135 -16.47989 -16.09831 -15.65156 -15.59064 -15.29672 -14.91824 -14.29707 -14.09847 -13.96689 -13.73927 -13.72452 -13.54724 -13.49153 -12.96267 -12.72184 -12.60881 -12.54687 -12.39768 -12.31274 -12.06318 -11.66383 -11.65503 -11.32357 -11.16227 -10.83583 -10.67268 -10.54236 -10.52034 -9.92463 -9.40354 -8.18849 -6.30449 0.75458 1.41901 1.45061 1.52564 1.55494 1.75521 1.95873 2.22110 2.42442 2.75270 3.14841 3.25967 3.67582 3.89728 3.93376 4.13637 4.16619 4.17971 4.23696 4.29900 4.36201 4.49056 4.54391 4.56586 4.57081 4.86321 4.87609 4.88827 4.96333 4.96745 4.99608 5.03133 5.17296 5.18414 5.32122 5.46095 5.54045 5.60849 5.71883 5.84896 5.92742 6.18324 6.21421 6.23190 6.86776 7.04580 7.39085 7.52877 8.93152 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.002535 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.425865 B =11044.093093 C =12586.606585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.061 3.939 4 C -0.110 4.110 5 C 0.257 3.743 6 H 0.109 0.891 7 N -0.726 5.726 8 C 0.701 3.299 9 O -0.632 6.632 10 N -0.728 5.728 11 C 0.151 3.849 12 C -0.100 4.100 13 C 0.024 3.976 14 C -0.542 4.542 15 H 0.067 0.933 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.265 1.265 22 C -0.038 4.038 23 C -0.214 4.214 24 C -0.229 4.229 25 C -0.046 4.046 26 O -0.182 6.182 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.414 0.586 35 H 0.412 0.588 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.066 0.934 40 H -0.009 1.009 41 H -0.007 1.007 42 H 0.263 0.737 43 H 0.155 0.845 44 H 0.166 0.834 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.983 -27.258 -9.375 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.015 4.015 4 C -0.148 4.148 5 C 0.151 3.849 6 H 0.127 0.873 7 N -0.383 5.383 8 C 0.401 3.599 9 O -0.513 6.513 10 N -0.384 5.384 11 C 0.026 3.974 12 C -0.138 4.138 13 C -0.014 4.014 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.090 4.090 23 C -0.234 4.234 24 C -0.248 4.248 25 C -0.113 4.113 26 O -0.079 6.079 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.251 0.749 35 H 0.248 0.752 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.009 0.991 41 H 0.011 0.989 42 H 0.072 0.928 43 H 0.173 0.827 44 H 0.184 0.816 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.219 -26.699 -9.996 28.595 hybrid contribution -0.230 0.819 0.960 1.283 sum 1.989 -25.879 -9.036 27.484 Atomic orbital electron populations 1.22924 0.79512 1.03873 1.00783 1.87808 1.21336 1.28240 1.95626 1.22501 0.93017 0.84653 1.01360 1.21685 0.93623 0.93668 1.05793 1.19192 0.83915 0.93778 0.88045 0.87318 1.45003 1.74966 1.03824 1.14504 1.16120 0.77746 0.82425 0.83577 1.90910 1.57929 1.66372 1.36049 1.45020 1.74280 1.07330 1.11742 1.21074 1.00204 0.78073 0.98064 1.21586 1.01563 0.96784 0.93859 1.18932 0.95081 0.91505 0.95838 1.21660 1.46790 0.92299 0.97234 0.91493 1.26029 0.95274 0.97150 1.01650 1.70109 1.50540 1.01586 1.35343 0.85472 0.79288 0.76859 0.79251 1.19049 1.21196 1.18956 1.23004 0.93413 1.05877 0.86680 1.21895 0.94031 1.07451 0.99983 1.22160 0.97856 1.07862 0.96875 1.24777 0.85974 1.05034 0.95501 1.83985 1.16991 1.69280 1.37602 0.93409 0.88313 0.93373 0.92370 0.92665 0.88235 0.89309 0.74892 0.75159 0.93842 0.93210 0.91178 0.91516 0.99096 0.98862 0.92807 0.82708 0.81603 0.74989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.75 10.70 -148.98 -1.59 -8.35 16 3 C 0.06 0.88 5.83 71.98 0.42 1.30 16 4 C -0.11 -1.54 5.10 30.59 0.16 -1.38 16 5 C 0.26 4.96 2.42 44.24 0.11 5.07 16 6 H 0.11 2.36 7.57 -2.39 -0.02 2.34 16 7 N -0.73 -14.76 4.51 -461.39 -2.08 -16.85 16 8 C 0.70 20.72 8.52 179.06 1.53 22.24 16 9 O -0.63 -24.68 16.01 -4.01 -0.06 -24.74 16 10 N -0.73 -20.20 5.56 -478.53 -2.66 -22.86 16 11 C 0.15 5.39 5.67 86.38 0.49 5.88 16 12 C -0.10 -3.84 5.27 30.60 0.16 -3.68 16 13 C 0.02 1.26 4.97 29.85 0.15 1.41 16 14 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 15 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 17 N -0.94 -57.34 13.29 21.45 0.28 -57.06 16 18 Si 0.97 43.72 29.54 68.60 2.03 45.74 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 C -0.04 -0.87 6.12 24.83 0.15 -0.71 16 23 C -0.21 -4.76 10.80 22.19 0.24 -4.52 16 24 C -0.23 -4.46 10.91 22.19 0.24 -4.22 16 25 C -0.05 -0.84 12.09 66.97 0.81 -0.03 16 26 O -0.18 -4.16 10.64 -2.46 -0.03 -4.19 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.79 7.75 -2.39 -0.02 0.77 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.41 5.89 8.61 -92.71 -0.80 5.10 16 35 H 0.41 8.49 8.49 -92.71 -0.79 7.70 16 36 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 41 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 43 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.23 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -76.34 385.21 1.68 -74.66 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.60 Total: 20.46 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 6.40 Total: -6.83 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -4.46 Total: -96.77 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -1.68 Total: -37.28 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -76.34 1.68 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272556292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.406 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds