Wall clock time and date at job start Fri Apr 10 2020 22:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35989 * 116.99897 * 2 1 4 4 C 1.40155 * 125.84261 * 179.97438 * 3 2 1 5 5 C 1.36065 * 107.82202 * 179.97438 * 4 3 2 6 6 N 1.39482 * 126.21727 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99935 * 0.02624 * 6 5 4 8 8 O 1.21587 * 120.00039 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99923 * 180.02562 * 7 6 5 10 10 C 1.46508 * 120.00091 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47084 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47233 * 300.00043 * 11 10 9 13 13 C 1.53000 * 109.47237 * 59.99802 * 11 10 9 14 14 C 1.52998 * 109.47170 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47429 * 180.02562 * 14 11 10 16 16 H 1.08002 * 119.99754 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00077 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99995 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99911 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46949 * 90.00020 * 19 17 15 21 21 H 1.48501 * 109.47141 * 209.99854 * 19 17 15 22 22 H 1.48502 * 109.47122 * 330.00122 * 19 17 15 23 23 N 1.35804 * 107.56287 * 0.02562 * 5 4 3 24 24 C 1.46505 * 126.04363 * 180.02562 * 23 5 4 25 25 N 1.31114 * 125.83576 * 359.97438 * 3 2 1 26 26 H 1.09006 * 109.46969 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47434 * 299.99290 * 1 2 3 28 28 H 1.09002 * 109.47485 * 60.00333 * 1 2 3 29 29 H 1.07998 * 126.08450 * 359.96440 * 4 3 2 30 30 H 0.97001 * 119.99685 * 180.02562 * 6 5 4 31 31 H 0.96997 * 120.00500 * 359.97438 * 9 7 6 32 32 H 1.08994 * 109.46648 * 299.99564 * 10 9 7 33 33 H 1.08994 * 109.46943 * 59.99656 * 10 9 7 34 34 H 1.08996 * 109.47175 * 60.00222 * 12 11 10 35 35 H 1.09007 * 109.47144 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.46769 * 299.99948 * 12 11 10 37 37 H 1.09007 * 109.47086 * 59.99846 * 13 11 10 38 38 H 1.08997 * 109.47451 * 179.97438 * 13 11 10 39 39 H 1.08996 * 109.47417 * 299.99928 * 13 11 10 40 40 H 1.08999 * 109.47123 * 300.00316 * 14 11 10 41 41 H 1.09000 * 109.47144 * 59.99860 * 14 11 10 42 42 H 0.97002 * 119.99975 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.46908 * 269.98164 * 24 23 5 44 44 H 1.09001 * 109.46949 * 29.97741 * 24 23 5 45 45 H 1.08996 * 109.47137 * 149.97430 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4312 1.4272 0.0005 5 6 3.6435 2.7711 -0.0003 6 7 4.8837 3.4095 -0.0006 7 6 6.0170 2.6802 -0.0007 8 8 5.9585 1.4657 -0.0009 9 7 7.2153 3.2971 -0.0005 10 6 8.4473 2.5043 -0.0011 11 6 9.6568 3.4413 -0.0014 12 6 9.6177 4.3242 -1.2504 13 6 9.6186 4.3236 1.2480 14 6 10.9434 2.6134 -0.0014 15 6 12.1347 3.5364 -0.0011 16 1 11.9887 4.6065 -0.0012 17 6 13.4110 3.0147 -0.0016 18 7 13.5887 1.7116 -0.0019 19 14 14.8876 4.1588 -0.0018 20 1 15.2793 4.4617 1.3982 21 1 16.0213 3.5036 -0.7023 22 1 14.5361 5.4206 -0.7015 23 7 2.4286 3.3780 -0.0006 24 6 2.1867 4.8229 -0.0020 25 7 1.4477 2.3782 -0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.1939 0.6625 0.0015 30 1 4.9303 4.3784 -0.0008 31 1 7.2621 4.2659 -0.0007 32 1 8.4749 1.8751 0.8885 33 1 8.4747 1.8761 -0.8914 34 1 8.7011 4.9140 -1.2499 35 1 10.4796 4.9915 -1.2508 36 1 9.6448 3.6956 -2.1405 37 1 9.6464 3.6947 2.1379 38 1 10.4805 4.9909 1.2481 39 1 8.7021 4.9134 1.2485 40 1 10.9710 1.9848 0.8886 41 1 10.9708 1.9846 -0.8913 42 1 14.4866 1.3446 -0.0026 43 1 2.1266 5.1822 1.0253 44 1 3.0047 5.3277 -0.5161 45 1 1.2492 5.0339 -0.5163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881242269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:25:58 Heat of formation + Delta-G solvation = 15.003810 kcal Electronic energy + Delta-G solvation = -25541.740384 eV Core-core repulsion = 21790.108207 eV Total energy + Delta-G solvation = -3751.632177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68511 -40.03512 -38.36105 -37.34697 -34.83805 -33.77754 -32.90692 -32.13909 -29.19712 -28.02152 -27.13568 -26.58268 -26.19735 -26.02590 -23.26503 -22.01966 -21.12718 -20.43986 -19.03425 -18.53456 -17.35711 -16.47862 -16.37954 -16.35520 -15.90000 -15.65914 -15.04200 -14.99471 -14.53257 -14.34163 -14.22883 -13.87485 -13.49707 -13.14603 -12.99271 -12.84067 -12.77704 -12.34311 -12.11758 -12.09931 -11.63717 -11.22923 -11.06236 -10.89854 -10.81377 -10.71903 -10.66831 -10.46670 -10.30305 -10.04899 -9.94191 -9.27262 -8.97838 -8.97755 -8.60156 -8.38910 -8.18239 -6.02847 -4.04457 1.64517 1.77043 2.46721 2.75022 3.24455 3.28268 3.28701 3.36112 3.37260 4.04733 4.23893 4.42602 4.80331 4.91476 5.03791 5.07130 5.15556 5.25900 5.32574 5.33352 5.39265 5.54084 5.55812 5.67284 5.80659 6.08829 6.11756 6.17083 6.27833 6.32297 6.49276 6.56390 6.63847 6.69473 6.93297 6.99159 7.01577 7.06324 7.21547 7.58293 7.60412 7.71962 7.83826 7.95378 8.36042 8.43858 9.00184 9.58823 11.08492 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.033058 B = 0.002343 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.788835 B =11949.810510 C =12589.631508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.287 6.287 3 C 0.276 3.724 4 C -0.281 4.281 5 C 0.356 3.644 6 N -0.664 5.664 7 C 0.706 3.294 8 O -0.555 6.555 9 N -0.725 5.725 10 C 0.145 3.855 11 C -0.072 4.072 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.512 4.512 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.388 5.388 24 C 0.106 3.894 25 N -0.346 5.346 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.182 0.818 30 H 0.406 0.594 31 H 0.396 0.604 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.260 0.740 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.500 6.904 -0.069 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.191 6.191 3 C 0.072 3.928 4 C -0.312 4.312 5 C 0.135 3.865 6 N -0.314 5.314 7 C 0.406 3.594 8 O -0.430 6.430 9 N -0.380 5.380 10 C 0.022 3.978 11 C -0.073 4.073 12 C -0.185 4.185 13 C -0.185 4.185 14 C -0.002 4.002 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 N -0.181 5.181 24 C -0.035 4.035 25 N -0.186 5.186 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.199 0.801 30 H 0.241 0.759 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.320 6.022 -0.074 25.055 hybrid contribution 1.411 1.413 0.013 1.998 sum -22.909 7.435 -0.061 24.085 Atomic orbital electron populations 1.22945 0.77932 1.03397 1.01921 1.86329 1.21827 1.21581 1.89381 1.20310 0.91510 0.84930 0.96042 1.20883 0.93871 0.94225 1.22269 1.17494 0.79396 0.89985 0.99613 1.41968 1.02192 1.09850 1.77419 1.15691 0.79834 0.85392 0.78518 1.90903 1.85149 1.11281 1.55648 1.45357 1.04216 1.10353 1.78122 1.21645 0.80349 0.93518 1.02284 1.20930 0.95382 0.95831 0.95114 1.21771 0.99944 0.99404 0.97351 1.21771 0.99942 0.99407 0.97351 1.19095 0.88857 0.94558 0.97657 1.21158 0.90485 0.92912 1.50490 0.92272 1.25017 0.99054 0.94908 0.95535 1.69960 1.21934 1.10673 1.50665 0.86645 0.82708 0.80901 0.78019 1.20781 1.21336 1.19979 1.47920 1.00878 1.05833 1.63487 1.21770 1.04007 0.74505 1.03253 1.77423 1.11091 0.94724 1.35392 0.88313 0.92626 0.92633 0.80051 0.75868 0.76847 0.91433 0.91443 0.95384 0.91355 0.93230 0.93227 0.91363 0.95381 0.96210 0.96203 0.92989 0.90835 0.90074 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.69 101.05 1.08 1.38 16 2 O -0.29 -3.82 10.58 -19.70 -0.21 -4.03 16 3 C 0.28 4.01 7.88 -17.14 -0.14 3.87 16 4 C -0.28 -4.31 9.66 -39.64 -0.38 -4.69 16 5 C 0.36 4.57 7.68 -152.68 -1.17 3.39 16 6 N -0.66 -7.11 5.42 -15.73 -0.09 -7.19 16 7 C 0.71 9.95 8.53 -86.92 -0.74 9.21 16 8 O -0.56 -10.06 13.47 5.29 0.07 -9.99 16 9 N -0.73 -9.34 4.96 -65.23 -0.32 -9.67 16 10 C 0.14 2.36 4.56 -4.04 -0.02 2.34 16 11 C -0.07 -1.27 0.54 -154.51 -0.08 -1.35 16 12 C -0.13 -2.07 8.05 37.16 0.30 -1.77 16 13 C -0.13 -2.06 8.05 37.16 0.30 -1.77 16 14 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 15 C -0.51 -13.16 7.65 -34.44 -0.26 -13.42 16 16 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 17 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 19 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 N -0.39 -4.33 4.04 -67.04 -0.27 -4.60 16 24 C 0.11 0.62 11.29 59.85 0.68 1.29 16 25 N -0.35 -4.61 11.95 30.53 0.37 -4.24 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.18 3.15 5.82 -52.49 -0.31 2.84 16 30 H 0.41 2.68 8.00 -40.82 -0.33 2.35 16 31 H 0.40 4.01 6.18 -40.82 -0.25 3.76 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.03 0.35 6.86 -51.93 -0.36 0.00 16 35 H 0.07 1.21 6.62 -51.92 -0.34 0.87 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.07 1.21 6.62 -51.93 -0.34 0.86 16 39 H 0.03 0.35 6.86 -51.93 -0.36 0.00 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.27 7.51 -51.93 -0.39 -0.12 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -33.36 366.67 -6.62 -39.98 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.76 Total: 2.98 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.65 Total: 0.65 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.42 Total: -50.86 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.14 Total: -14.02 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.36 -6.62 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881242269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.985 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds