Wall clock time and date at job start Fri Apr 10 2020 22:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34234 * 117.00403 * 2 1 4 4 O 1.20823 * 119.99373 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99991 * 180.02562 * 3 2 1 6 6 C 1.54158 * 112.55151 * 298.07801 * 5 3 2 7 7 C 1.54840 * 104.33086 * 213.35725 * 6 5 3 8 8 C 1.54844 * 102.73273 * 38.19408 * 7 6 5 9 9 C 1.54166 * 104.32481 * 321.80984 * 8 7 6 10 10 H 1.08998 * 111.82354 * 146.21010 * 9 8 7 11 11 C 1.54681 * 108.72630 * 271.34762 * 9 8 7 12 12 N 1.48119 * 104.52184 * 137.63209 * 11 9 8 13 13 C 1.34773 * 127.83958 * 140.24987 * 12 11 9 14 14 O 1.21591 * 120.00000 * 179.67817 * 13 12 11 15 15 N 1.34777 * 120.00462 * 359.67820 * 13 12 11 16 16 C 1.46500 * 120.00376 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47473 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47094 * 90.00289 * 22 20 18 24 24 H 1.48505 * 109.47195 * 210.00171 * 22 20 18 25 25 H 1.48493 * 109.47449 * 330.00136 * 22 20 18 26 26 C 1.48109 * 104.31281 * 319.98539 * 12 11 9 27 27 H 1.09000 * 109.47650 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46818 * 300.00014 * 1 2 3 29 29 H 1.09004 * 109.47520 * 59.99169 * 1 2 3 30 30 H 1.09008 * 110.46425 * 332.07506 * 6 5 3 31 31 H 1.09004 * 110.45801 * 94.64623 * 6 5 3 32 32 H 1.08996 * 110.76069 * 279.88294 * 7 6 5 33 33 H 1.08997 * 110.91895 * 156.57074 * 7 6 5 34 34 H 1.08995 * 110.46205 * 203.10094 * 8 7 6 35 35 H 1.09000 * 110.46425 * 80.51568 * 8 7 6 36 36 H 1.08997 * 110.50975 * 18.86368 * 11 9 8 37 37 H 1.09006 * 110.43934 * 256.36286 * 11 9 8 38 38 H 0.97004 * 120.00228 * 0.02562 * 15 13 12 39 39 H 1.09002 * 109.47129 * 59.99747 * 16 15 13 40 40 H 1.08998 * 109.46845 * 300.00553 * 16 15 13 41 41 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 42 42 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 43 43 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.39375 * 158.76646 * 26 12 11 45 45 H 1.08995 * 110.39694 * 281.05450 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1923 0.6362 1.2552 7 6 5.4537 1.4907 1.5314 8 6 4.9768 2.9236 1.1896 9 6 4.0687 2.7397 -0.0426 10 1 3.2443 3.4527 -0.0485 11 6 4.9398 2.8220 -1.3181 12 7 4.4316 1.7344 -2.1858 13 6 4.2491 1.7588 -3.5209 14 8 3.8256 0.7740 -4.0946 15 7 4.5360 2.8747 -4.2201 16 6 4.3370 2.9014 -5.6712 17 6 4.7360 4.2744 -6.2156 18 6 4.5319 4.3016 -7.7085 19 1 4.1549 3.4271 -8.2180 20 6 4.8255 5.4432 -8.4238 21 7 5.2841 6.5082 -7.8033 22 14 4.5718 5.4771 -10.2741 23 1 3.1939 5.9409 -10.5765 24 1 5.5532 6.4051 -10.8914 25 1 4.7668 4.1122 -10.8256 26 6 4.1758 0.6120 -1.2540 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 3.5014 0.6934 2.0965 31 1 4.4692 -0.3995 1.0582 32 1 6.2739 1.1907 0.8793 33 1 5.7491 1.4214 2.5783 34 1 5.8271 3.5599 0.9446 35 1 4.4109 3.3453 2.0203 36 1 5.9892 2.6553 -1.0753 37 1 4.8107 3.7885 -1.8055 38 1 4.8742 3.6603 -3.7624 39 1 3.2879 2.7111 -5.8977 40 1 4.9542 2.1330 -6.1367 41 1 5.7852 4.4642 -5.9892 42 1 4.1190 5.0431 -5.7502 43 1 5.4909 7.3112 -8.3066 44 1 3.4691 -0.0924 -1.6927 45 1 5.1084 0.1066 -1.0029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883606258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:01 Heat of formation + Delta-G solvation = -142.883251 kcal Electronic energy + Delta-G solvation = -26436.921560 eV Core-core repulsion = 22646.150135 eV Total energy + Delta-G solvation = -3790.771425 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45817 -41.02578 -39.79278 -37.58117 -36.65378 -35.72674 -34.80324 -32.36147 -31.54145 -30.24108 -28.61349 -27.10934 -26.56436 -25.44571 -23.34673 -22.92145 -21.52091 -21.26757 -20.16667 -19.25691 -18.51866 -18.46365 -17.96800 -17.53547 -17.09740 -16.90908 -16.50612 -15.94684 -15.72217 -15.38383 -15.18154 -14.99042 -14.59744 -14.30659 -14.23683 -13.88967 -13.55977 -13.36278 -13.25344 -13.18559 -12.95272 -12.77914 -12.53096 -12.27816 -12.27006 -11.97966 -11.92894 -11.87806 -11.78205 -11.70149 -11.60954 -11.44675 -11.40871 -11.18448 -10.61926 -10.27474 -9.63021 -8.25015 -6.35591 0.99539 1.40553 1.42088 1.47332 1.54458 1.62922 2.04690 2.40011 2.94005 3.09707 3.10241 3.34201 3.55274 3.82401 4.01089 4.12814 4.20933 4.22943 4.23730 4.31950 4.38564 4.42918 4.47021 4.52623 4.59853 4.64029 4.72860 4.75446 4.81800 4.92497 5.03375 5.10664 5.15943 5.22872 5.26011 5.32017 5.33559 5.47227 5.48371 5.55788 5.76826 5.97490 6.15268 6.57277 6.76965 6.91044 7.33624 7.47125 8.87064 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.002919 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.398421 B = 9588.852913 C =10202.962641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.475 3.525 4 O -0.535 6.535 5 C -0.070 4.070 6 C -0.097 4.097 7 C -0.117 4.117 8 C -0.111 4.111 9 C -0.092 4.092 10 H 0.083 0.917 11 C 0.103 3.897 12 N -0.647 5.647 13 C 0.719 3.281 14 O -0.637 6.637 15 N -0.731 5.731 16 C 0.161 3.839 17 C 0.026 3.974 18 C -0.548 4.548 19 H 0.059 0.941 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.266 1.266 26 C 0.138 3.862 27 H 0.135 0.865 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.404 0.596 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.011 0.989 42 H 0.005 0.995 43 H 0.266 0.734 44 H 0.066 0.934 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 -11.549 25.667 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.319 3.681 4 O -0.425 6.425 5 C -0.072 4.072 6 C -0.135 4.135 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.112 4.112 10 H 0.101 0.899 11 C -0.019 4.019 12 N -0.385 5.385 13 C 0.421 3.579 14 O -0.519 6.519 15 N -0.386 5.386 16 C 0.037 3.963 17 C -0.012 4.012 18 C -0.586 4.586 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.791 3.209 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.190 1.190 26 C 0.015 3.985 27 H 0.153 0.847 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.096 0.904 38 H 0.240 0.760 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.030 0.970 42 H 0.024 0.976 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.752 -11.796 25.066 27.713 hybrid contribution -0.736 0.861 -1.141 1.608 sum -1.488 -10.935 23.925 26.348 Atomic orbital electron populations 1.23546 0.74951 1.05841 1.02187 1.86487 1.24826 1.32603 1.83470 1.23788 0.92297 0.81213 0.70809 1.90639 1.67714 1.37476 1.46634 1.22119 0.85749 0.99494 0.99840 1.22407 0.97620 1.00747 0.92737 1.22550 0.96353 0.93017 1.03478 1.22419 0.98725 0.98689 0.95063 1.22838 0.98504 0.93364 0.96471 0.89871 1.22898 0.99230 0.90548 0.89260 1.48065 1.69164 1.17659 1.03592 1.15573 0.78453 0.83301 0.80571 1.90857 1.55131 1.36310 1.69634 1.45242 1.70234 1.14355 1.08742 1.21115 0.99117 0.99022 0.77091 1.19112 0.96019 0.90684 0.95351 1.21447 1.44514 0.99215 0.93421 0.92290 1.25876 0.94422 0.94995 1.03828 1.70058 1.45038 1.03553 1.37883 0.85424 0.78152 0.78366 0.78981 1.19866 1.20325 1.18995 1.22392 1.01909 0.88458 0.85744 0.84711 0.91200 0.93382 0.90436 0.88162 0.89719 0.88604 0.88816 0.90649 0.87202 0.90448 0.75994 0.94199 0.93424 0.97049 0.97618 0.92487 0.91506 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.36 -8.02 10.40 -51.45 -0.54 -8.56 16 3 C 0.47 11.95 6.64 71.23 0.47 12.42 16 4 O -0.54 -16.81 15.24 21.97 0.33 -16.48 16 5 C -0.07 -1.31 0.92 -51.43 -0.05 -1.35 16 6 C -0.10 -1.02 5.67 31.61 0.18 -0.84 16 7 C -0.12 -0.81 6.82 31.85 0.22 -0.59 16 8 C -0.11 -1.12 6.10 31.62 0.19 -0.93 16 9 C -0.09 -1.66 3.53 -9.17 -0.03 -1.69 16 10 H 0.08 1.95 6.78 -2.39 -0.02 1.94 16 11 C 0.10 2.01 6.30 86.64 0.55 2.56 16 12 N -0.65 -18.19 3.31 -825.60 -2.73 -20.93 16 13 C 0.72 27.71 8.57 179.06 1.53 29.25 16 14 O -0.64 -29.78 16.61 -4.00 -0.07 -29.85 16 15 N -0.73 -28.28 5.53 -478.54 -2.65 -30.93 16 16 C 0.16 7.39 5.61 86.38 0.48 7.88 16 17 C 0.03 1.35 5.09 29.85 0.15 1.50 16 18 C -0.55 -31.33 9.11 25.60 0.23 -31.09 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 20 C 0.01 0.43 5.46 84.66 0.46 0.90 16 21 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 22 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C 0.14 3.07 6.02 86.52 0.52 3.59 16 27 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.10 8.13 -2.38 -0.02 1.08 16 29 H 0.05 0.99 8.13 -2.38 -0.02 0.98 16 30 H 0.08 0.79 7.98 -2.38 -0.02 0.78 16 31 H 0.10 0.77 7.74 -2.38 -0.02 0.75 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.09 0.71 7.74 -2.39 -0.02 0.69 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.11 1.51 7.63 -2.39 -0.02 1.49 16 37 H 0.08 1.59 6.85 -2.38 -0.02 1.57 16 38 H 0.40 13.62 6.87 -92.71 -0.64 12.98 16 39 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.07 1.83 7.49 -2.39 -0.02 1.81 16 45 H 0.12 1.86 7.62 -2.39 -0.02 1.84 16 Total: -1.00 -77.89 365.77 3.13 -74.76 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.35 Total: 17.03 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 6.11 Total: 23.28 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -5.10 Total: -106.46 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.27 Total: -54.88 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -77.89 3.13 -74.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883606258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.121 kcal (2) G-P(sol) polarization free energy of solvation -77.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds