Wall clock time and date at job start Fri Apr 10 2020 22:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36357 * 119.91951 * 2 1 4 4 C 1.40867 * 119.83925 * 180.29473 * 3 2 1 5 5 C 1.41129 * 120.16024 * 179.74152 * 4 3 2 6 6 H 1.07999 * 120.00019 * 334.53182 * 5 4 3 7 7 C 1.39865 * 120.00216 * 154.52566 * 5 4 3 8 8 N 1.30906 * 120.00289 * 343.04322 * 7 5 4 9 9 Si 1.86800 * 119.99956 * 163.04021 * 7 5 4 10 10 H 1.48498 * 109.47470 * 60.00366 * 9 7 5 11 11 H 1.48504 * 109.47387 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47216 * 300.00370 * 9 7 5 13 13 C 1.40910 * 119.68477 * 359.71988 * 4 3 2 14 14 C 1.36325 * 119.83599 * 0.02562 * 13 4 3 15 15 C 1.39548 * 119.92065 * 179.76211 * 2 1 3 16 16 N 1.38854 * 119.83761 * 359.97438 * 15 2 1 17 17 C 1.46505 * 119.99795 * 179.72193 * 16 15 2 18 18 C 1.52997 * 109.47451 * 180.02562 * 17 16 15 19 19 C 1.52991 * 109.47316 * 180.02562 * 18 17 16 20 20 C 1.53006 * 109.47180 * 180.02562 * 19 18 17 21 21 C 1.50702 * 109.47263 * 180.02562 * 20 19 18 22 22 C 1.38222 * 119.61966 * 125.02002 * 21 20 19 23 23 C 1.38631 * 119.16023 * 179.74370 * 22 21 20 24 24 C 1.38670 * 118.42067 * 0.47782 * 23 22 21 25 25 C 1.38175 * 119.16169 * 359.50383 * 24 23 22 26 26 N 1.31861 * 119.61433 * 305.00104 * 21 20 19 27 27 H 1.09000 * 109.47134 * 270.23801 * 1 2 3 28 28 H 1.08995 * 109.47065 * 30.23747 * 1 2 3 29 29 H 1.09000 * 109.46726 * 150.23770 * 1 2 3 30 30 H 1.08009 * 120.08046 * 0.02562 * 3 2 1 31 31 H 0.96992 * 120.00111 * 179.97438 * 8 7 5 32 32 H 1.08001 * 120.08040 * 179.97438 * 13 4 3 33 33 H 1.08002 * 119.91355 * 179.97438 * 14 13 4 34 34 H 0.97002 * 120.00740 * 359.72919 * 16 15 2 35 35 H 1.09003 * 109.46794 * 60.00576 * 17 16 15 36 36 H 1.08998 * 109.47131 * 300.00524 * 17 16 15 37 37 H 1.09003 * 109.46743 * 60.00432 * 18 17 16 38 38 H 1.09000 * 109.47013 * 300.00783 * 18 17 16 39 39 H 1.09003 * 109.47050 * 60.00389 * 19 18 17 40 40 H 1.09000 * 109.47531 * 300.00235 * 19 18 17 41 41 H 1.09003 * 109.46935 * 60.00168 * 20 19 18 42 42 H 1.08998 * 109.47233 * 299.99966 * 20 19 18 43 43 H 1.08001 * 120.41962 * 359.96262 * 22 21 20 44 44 H 1.08003 * 120.78723 * 180.23264 * 23 22 21 45 45 H 1.08003 * 120.41990 * 179.77743 * 24 23 22 46 46 H 1.08006 * 119.61705 * 180.25120 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1799 -0.0063 5 6 4.3065 2.3991 -0.0118 6 1 3.8472 3.2901 -0.4137 7 6 5.6058 2.4536 0.5032 8 7 6.0433 1.4940 1.2787 9 14 6.7167 3.8958 0.0845 10 1 6.0904 5.1567 0.5570 11 1 8.0324 3.7167 0.7496 12 1 6.9108 3.9605 -1.3863 13 6 4.2919 -0.0453 -0.0065 14 6 3.5988 -1.2192 -0.0013 15 6 2.2031 -1.2095 0.0050 16 7 1.5038 -2.4090 0.0105 17 6 2.2310 -3.6809 0.0097 18 6 1.2319 -4.8396 0.0158 19 6 1.9914 -6.1678 0.0156 20 6 0.9923 -7.3266 0.0211 21 6 1.7403 -8.6348 0.0215 22 6 1.4839 -9.5681 1.0082 23 6 2.1736 -10.7706 0.9964 24 6 3.1069 -10.9863 -0.0063 25 6 3.3095 -10.0067 -0.9596 26 7 2.6316 -8.8761 -0.9199 27 1 -0.3633 0.0043 1.0277 28 1 -0.3633 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5101 30 1 1.6471 2.1172 0.0004 31 1 6.9444 1.5316 1.6355 32 1 5.3719 -0.0542 -0.0118 33 1 4.1311 -2.1589 -0.0019 34 1 0.5337 -2.4051 0.0149 35 1 2.8614 -3.7395 0.8970 36 1 2.8533 -3.7429 -0.8830 37 1 0.6019 -4.7808 -0.8717 38 1 0.6092 -4.7777 0.9083 39 1 2.6212 -6.2264 0.9033 40 1 2.6144 -6.2300 -0.8767 41 1 0.3628 -7.2678 -0.8669 42 1 0.3689 -7.2647 0.9131 43 1 0.7529 -9.3646 1.7767 44 1 1.9913 -11.5200 1.7525 45 1 3.6652 -11.9100 -0.0443 46 1 4.0317 -10.1686 -1.7462 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168798442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:44 Heat of formation + Delta-G solvation = 34.118992 kcal Electronic energy + Delta-G solvation = -23451.718929 eV Core-core repulsion = 20111.764912 eV Total energy + Delta-G solvation = -3339.954017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.48441 -38.26552 -36.28639 -34.61901 -33.27730 -32.65324 -31.56044 -31.17979 -29.11244 -27.63694 -25.72945 -24.76358 -23.85190 -23.44664 -22.02659 -21.14601 -19.86401 -19.81657 -17.15496 -16.76337 -16.57511 -16.09136 -15.69469 -15.54440 -15.08044 -14.84220 -14.40086 -13.83338 -13.66459 -13.57091 -13.32047 -12.97028 -12.77822 -12.65794 -12.29266 -12.19160 -11.82436 -11.72073 -11.71154 -11.45652 -11.28242 -10.99045 -10.95369 -10.87186 -10.62267 -10.59784 -10.27845 -10.17347 -9.66598 -9.59442 -9.25129 -9.22533 -9.14936 -8.45400 -7.28902 -6.55948 -6.28121 -3.97613 0.79975 0.97041 2.98301 3.11535 3.17564 3.21047 3.40502 3.48885 3.99727 4.10042 4.24424 4.49114 4.53830 4.73846 4.79871 4.80823 4.93652 4.98913 5.11565 5.32246 5.36205 5.48606 5.58826 5.65205 5.76747 5.80774 5.82308 5.86740 5.97240 5.99713 6.10553 6.14696 6.33071 6.34996 6.38698 6.41572 6.42765 6.60897 6.96721 7.01681 7.29246 7.45241 7.62921 7.72809 7.78142 7.92498 8.21742 8.36718 8.55503 8.77874 8.87238 9.12148 9.21997 10.44268 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.019721 B = 0.002091 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.472460 B =13384.660881 C =14501.654140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.137 4.137 3 C -0.182 4.182 4 C 0.074 3.926 5 C -0.467 4.467 6 H 0.071 0.929 7 C 0.074 3.926 8 N -0.810 5.810 9 Si 0.903 3.097 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.267 1.267 13 C -0.123 4.123 14 C -0.164 4.164 15 C 0.100 3.900 16 N -0.762 5.762 17 C 0.138 3.862 18 C -0.128 4.128 19 C -0.106 4.106 20 C -0.070 4.070 21 C 0.135 3.865 22 C -0.173 4.173 23 C -0.074 4.074 24 C -0.184 4.184 25 C 0.103 3.897 26 N -0.480 5.480 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.276 0.724 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.384 0.616 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 -22.213 -0.551 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C -0.203 4.203 4 C 0.071 3.929 5 C -0.499 4.499 6 H 0.089 0.911 7 C -0.141 4.141 8 N -0.438 5.438 9 Si 0.728 3.272 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.191 1.191 13 C -0.143 4.143 14 C -0.186 4.186 15 C 0.002 3.998 16 N -0.399 5.399 17 C 0.012 3.988 18 C -0.166 4.166 19 C -0.145 4.145 20 C -0.108 4.108 21 C -0.003 4.003 22 C -0.193 4.193 23 C -0.100 4.100 24 C -0.204 4.204 25 C -0.054 4.054 26 N -0.189 5.189 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.134 -21.751 -1.045 22.915 hybrid contribution 0.230 -0.162 0.659 0.717 sum -6.905 -21.913 -0.385 22.978 Atomic orbital electron populations 1.20470 0.94084 1.00344 1.00114 1.18648 0.93403 0.92370 1.09635 1.20437 0.94242 0.94794 1.10778 1.17473 0.90659 0.93215 0.91529 1.19304 0.98111 0.95935 1.36526 0.91077 1.25783 0.98407 0.96958 0.92924 1.69845 1.17721 1.32420 1.23793 0.86469 0.79064 0.81968 0.79681 1.19330 1.20645 1.19140 1.20930 0.99626 0.91093 1.02662 1.20091 0.91625 0.97507 1.09382 1.17157 0.90876 0.84394 1.07335 1.43956 1.06559 1.02175 1.87201 1.20987 0.94278 0.83247 1.00240 1.21754 0.98651 0.93972 1.02188 1.21399 0.97681 0.92177 1.03235 1.20598 0.97242 0.89703 1.03225 1.21381 0.92936 0.95879 0.90080 1.22030 1.01940 0.94858 1.00464 1.21596 0.94231 0.96762 0.97455 1.22137 1.00202 1.01256 0.96756 1.22799 0.96642 0.88718 0.97280 1.67512 1.06284 1.21122 1.23993 0.93298 0.92952 0.93718 0.89109 0.91363 0.86471 0.89380 0.78264 0.93632 0.93566 0.91633 0.91781 0.91955 0.90539 0.89859 0.90311 0.84813 0.84942 0.84919 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.55 36.01 0.34 -1.32 16 2 C -0.14 -3.10 5.86 -104.81 -0.61 -3.71 16 3 C -0.18 -4.61 9.37 -39.27 -0.37 -4.97 16 4 C 0.07 2.05 5.57 -106.79 -0.59 1.46 16 5 C -0.47 -12.97 9.03 -37.88 -0.34 -13.31 16 6 H 0.07 1.90 7.90 -52.49 -0.41 1.49 16 7 C 0.07 1.95 5.15 -17.34 -0.09 1.86 16 8 N -0.81 -22.01 10.96 55.54 0.61 -21.40 16 9 Si 0.90 19.67 29.59 -169.99 -5.03 14.64 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 13 C -0.12 -3.32 8.63 -39.26 -0.34 -3.66 16 14 C -0.16 -3.98 9.23 -39.77 -0.37 -4.35 16 15 C 0.10 2.23 6.65 -83.69 -0.56 1.68 16 16 N -0.76 -13.65 5.60 -58.50 -0.33 -13.98 16 17 C 0.14 2.12 4.89 -4.04 -0.02 2.10 16 18 C -0.13 -1.44 5.33 -26.74 -0.14 -1.59 16 19 C -0.11 -1.12 5.07 -26.73 -0.14 -1.25 16 20 C -0.07 -0.62 5.61 -27.88 -0.16 -0.77 16 21 C 0.13 1.33 6.18 -82.58 -0.51 0.82 16 22 C -0.17 -1.39 9.71 -39.44 -0.38 -1.78 16 23 C -0.07 -0.52 10.18 -39.28 -0.40 -0.92 16 24 C -0.18 -1.30 10.11 -39.44 -0.40 -1.70 16 25 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 26 N -0.48 -5.31 9.88 -9.47 -0.09 -5.41 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 29 H 0.04 0.70 6.54 -51.93 -0.34 0.36 16 30 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 31 H 0.28 6.88 8.30 -40.82 -0.34 6.55 16 32 H 0.12 3.27 6.19 -52.49 -0.32 2.95 16 33 H 0.09 1.97 6.68 -52.49 -0.35 1.62 16 34 H 0.38 6.11 6.43 -40.82 -0.26 5.84 16 35 H 0.05 0.75 7.93 -51.93 -0.41 0.33 16 36 H 0.05 0.75 7.93 -51.93 -0.41 0.34 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 43 H 0.13 0.79 7.95 -52.49 -0.42 0.37 16 44 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 45 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 46 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -30.81 377.32 -11.54 -42.35 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.11 Total: 8.81 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -5.27 Total: -30.70 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.19 Total: -40.79 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.81 -11.54 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168798442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.471 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds