Wall clock time and date at job start Fri Apr 10 2020 22:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36357 * 119.91951 * 2 1 4 4 C 1.40867 * 119.83925 * 180.29473 * 3 2 1 5 5 C 1.41129 * 120.16024 * 179.74152 * 4 3 2 6 6 H 1.07999 * 120.00019 * 334.53182 * 5 4 3 7 7 C 1.39865 * 120.00216 * 154.52566 * 5 4 3 8 8 N 1.30906 * 120.00289 * 343.04322 * 7 5 4 9 9 Si 1.86800 * 119.99956 * 163.04021 * 7 5 4 10 10 H 1.48498 * 109.47470 * 60.00366 * 9 7 5 11 11 H 1.48504 * 109.47387 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47216 * 300.00370 * 9 7 5 13 13 C 1.40910 * 119.68477 * 359.71988 * 4 3 2 14 14 C 1.36325 * 119.83599 * 0.02562 * 13 4 3 15 15 C 1.39548 * 119.92065 * 179.76211 * 2 1 3 16 16 N 1.38854 * 119.83761 * 359.97438 * 15 2 1 17 17 C 1.46505 * 119.99795 * 179.72193 * 16 15 2 18 18 C 1.52997 * 109.47451 * 180.02562 * 17 16 15 19 19 C 1.52991 * 109.47316 * 180.02562 * 18 17 16 20 20 C 1.53006 * 109.47180 * 180.02562 * 19 18 17 21 21 C 1.50702 * 109.47263 * 180.02562 * 20 19 18 22 22 C 1.38222 * 119.61966 * 125.02002 * 21 20 19 23 23 C 1.38631 * 119.16023 * 179.74370 * 22 21 20 24 24 C 1.38670 * 118.42067 * 0.47782 * 23 22 21 25 25 C 1.38175 * 119.16169 * 359.50383 * 24 23 22 26 26 N 1.31861 * 119.61433 * 305.00104 * 21 20 19 27 27 H 1.09000 * 109.47134 * 270.23801 * 1 2 3 28 28 H 1.08995 * 109.47065 * 30.23747 * 1 2 3 29 29 H 1.09000 * 109.46726 * 150.23770 * 1 2 3 30 30 H 1.08009 * 120.08046 * 0.02562 * 3 2 1 31 31 H 0.96992 * 120.00111 * 179.97438 * 8 7 5 32 32 H 1.08001 * 120.08040 * 179.97438 * 13 4 3 33 33 H 1.08002 * 119.91355 * 179.97438 * 14 13 4 34 34 H 0.97002 * 120.00740 * 359.72919 * 16 15 2 35 35 H 1.09003 * 109.46794 * 60.00576 * 17 16 15 36 36 H 1.08998 * 109.47131 * 300.00524 * 17 16 15 37 37 H 1.09003 * 109.46743 * 60.00432 * 18 17 16 38 38 H 1.09000 * 109.47013 * 300.00783 * 18 17 16 39 39 H 1.09003 * 109.47050 * 60.00389 * 19 18 17 40 40 H 1.09000 * 109.47531 * 300.00235 * 19 18 17 41 41 H 1.09003 * 109.46935 * 60.00168 * 20 19 18 42 42 H 1.08998 * 109.47233 * 299.99966 * 20 19 18 43 43 H 1.08001 * 120.41962 * 359.96262 * 22 21 20 44 44 H 1.08003 * 120.78723 * 180.23264 * 23 22 21 45 45 H 1.08003 * 120.41990 * 179.77743 * 24 23 22 46 46 H 1.08006 * 119.61705 * 180.25120 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1799 -0.0063 5 6 4.3065 2.3991 -0.0118 6 1 3.8472 3.2901 -0.4137 7 6 5.6058 2.4536 0.5032 8 7 6.0433 1.4940 1.2787 9 14 6.7167 3.8958 0.0845 10 1 6.0904 5.1567 0.5570 11 1 8.0324 3.7167 0.7496 12 1 6.9108 3.9605 -1.3863 13 6 4.2919 -0.0453 -0.0065 14 6 3.5988 -1.2192 -0.0013 15 6 2.2031 -1.2095 0.0050 16 7 1.5038 -2.4090 0.0105 17 6 2.2310 -3.6809 0.0097 18 6 1.2319 -4.8396 0.0158 19 6 1.9914 -6.1678 0.0156 20 6 0.9923 -7.3266 0.0211 21 6 1.7403 -8.6348 0.0215 22 6 1.4839 -9.5681 1.0082 23 6 2.1736 -10.7706 0.9964 24 6 3.1069 -10.9863 -0.0063 25 6 3.3095 -10.0067 -0.9596 26 7 2.6316 -8.8761 -0.9199 27 1 -0.3633 0.0043 1.0277 28 1 -0.3633 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5101 30 1 1.6471 2.1172 0.0004 31 1 6.9444 1.5316 1.6355 32 1 5.3719 -0.0542 -0.0118 33 1 4.1311 -2.1589 -0.0019 34 1 0.5337 -2.4051 0.0149 35 1 2.8614 -3.7395 0.8970 36 1 2.8533 -3.7429 -0.8830 37 1 0.6019 -4.7808 -0.8717 38 1 0.6092 -4.7777 0.9083 39 1 2.6212 -6.2264 0.9033 40 1 2.6144 -6.2300 -0.8767 41 1 0.3628 -7.2678 -0.8669 42 1 0.3689 -7.2647 0.9131 43 1 0.7529 -9.3646 1.7767 44 1 1.9913 -11.5200 1.7525 45 1 3.6652 -11.9100 -0.0443 46 1 4.0317 -10.1686 -1.7462 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168798442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:43 Heat of formation + Delta-G solvation = 18.703218 kcal Electronic energy + Delta-G solvation = -23452.387408 eV Core-core repulsion = 20111.764912 eV Total energy + Delta-G solvation = -3340.622496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08216 -40.04814 -37.53255 -36.05371 -34.77793 -33.28901 -33.06041 -32.51184 -30.68532 -28.83570 -27.47536 -26.18661 -24.95669 -24.37330 -23.05228 -22.05741 -21.63306 -21.47802 -18.73862 -17.87893 -17.60278 -17.21837 -16.81176 -16.59575 -16.44003 -16.25769 -15.41588 -15.21943 -14.72936 -14.67662 -14.47149 -14.30674 -14.18462 -13.87924 -13.70150 -13.53951 -13.25736 -13.07125 -12.88497 -12.77864 -12.72402 -12.50439 -12.35090 -12.10836 -12.08159 -11.94560 -11.54448 -11.46588 -11.15244 -11.02572 -10.77225 -10.29477 -10.27215 -9.84617 -9.21933 -8.51825 -8.09891 -5.99990 0.21068 0.40307 1.12461 1.17516 1.39050 1.50400 1.59727 2.27382 2.82969 2.85468 2.95967 3.43293 3.76742 3.82678 4.01141 4.04512 4.09804 4.26290 4.28594 4.34923 4.38935 4.44774 4.50055 4.64689 4.67914 4.72642 4.82310 4.85915 4.91476 4.95322 5.01658 5.02339 5.11359 5.11867 5.15962 5.25330 5.31090 5.33121 5.39681 5.44998 5.54820 5.71462 5.85171 5.90329 6.00674 6.21747 6.42406 6.68561 6.88594 7.09594 7.11477 7.17742 7.36591 8.50016 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.019721 B = 0.002091 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.472460 B =13384.660881 C =14501.654140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.144 4.144 3 C -0.193 4.193 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.068 0.932 7 C 0.029 3.971 8 N -0.845 5.845 9 Si 0.978 3.022 10 H -0.261 1.261 11 H -0.271 1.271 12 H -0.264 1.264 13 C -0.147 4.147 14 C -0.177 4.177 15 C 0.112 3.888 16 N -0.750 5.750 17 C 0.134 3.866 18 C -0.112 4.112 19 C -0.099 4.099 20 C -0.064 4.064 21 C 0.109 3.891 22 C -0.178 4.178 23 C -0.079 4.079 24 C -0.181 4.181 25 C 0.081 3.919 26 N -0.516 5.516 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.281 0.719 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.398 0.602 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.159 0.841 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 -23.889 -0.070 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.148 4.148 3 C -0.213 4.213 4 C 0.031 3.969 5 C -0.537 4.537 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.473 5.473 9 Si 0.799 3.201 10 H -0.185 1.185 11 H -0.195 1.195 12 H -0.188 1.188 13 C -0.167 4.167 14 C -0.200 4.200 15 C 0.013 3.987 16 N -0.386 5.386 17 C 0.010 3.990 18 C -0.150 4.150 19 C -0.137 4.137 20 C -0.102 4.102 21 C -0.028 4.028 22 C -0.198 4.198 23 C -0.105 4.105 24 C -0.201 4.201 25 C -0.076 4.076 26 N -0.226 5.226 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.234 0.766 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.173 0.827 44 H 0.179 0.821 45 H 0.177 0.823 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.006 -23.464 -0.566 25.139 hybrid contribution 0.704 0.166 0.514 0.888 sum -8.302 -23.298 -0.051 24.733 Atomic orbital electron populations 1.20497 0.90128 1.02206 1.01648 1.19146 0.96346 0.91395 1.07925 1.20664 0.93625 0.96268 1.10707 1.17829 0.92128 0.93598 0.93322 1.19544 0.99728 0.96096 1.38306 0.91408 1.26642 0.99394 1.00001 0.92211 1.69924 1.18300 1.34428 1.24652 0.85332 0.77086 0.78283 0.79383 1.18517 1.19524 1.18811 1.20820 0.98817 0.92169 1.04894 1.20230 0.92911 0.97075 1.09742 1.17295 0.90447 0.86235 1.04769 1.43986 1.07307 1.01513 1.85833 1.21124 0.95215 0.83539 0.99171 1.21635 0.97677 0.92231 1.03470 1.21278 0.97832 0.92676 1.01950 1.20568 0.96741 0.88573 1.04303 1.21608 0.93515 0.96829 0.90836 1.22316 1.02291 0.94851 1.00300 1.22017 0.93566 0.97028 0.97856 1.22464 1.00006 1.01668 0.95963 1.23162 0.97096 0.88836 0.98481 1.67463 1.07442 1.22510 1.25215 0.91735 0.91887 0.91174 0.88598 0.90880 0.88638 0.88313 0.76564 0.94724 0.94682 0.90550 0.90150 0.92715 0.92432 0.89761 0.88180 0.82733 0.82119 0.82306 0.81508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.86 9.55 71.24 0.68 -2.18 16 2 C -0.14 -6.38 5.86 -19.99 -0.12 -6.50 16 3 C -0.19 -9.88 9.37 22.47 0.21 -9.67 16 4 C 0.03 1.97 5.57 -21.27 -0.12 1.85 16 5 C -0.51 -29.26 9.03 23.37 0.21 -29.05 16 6 H 0.07 3.79 7.90 -2.91 -0.02 3.77 16 7 C 0.03 1.57 5.15 85.22 0.44 2.01 16 8 N -0.84 -47.79 10.96 21.82 0.24 -47.55 16 9 Si 0.98 41.38 29.59 68.60 2.03 43.41 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 13 C -0.15 -8.31 8.63 22.48 0.19 -8.12 16 14 C -0.18 -8.81 9.23 22.15 0.20 -8.61 16 15 C 0.11 4.95 6.65 38.67 0.26 5.21 16 16 N -0.75 -25.29 5.60 -338.99 -1.90 -27.19 16 17 C 0.13 3.96 4.89 86.38 0.42 4.39 16 18 C -0.11 -2.28 5.33 30.59 0.16 -2.12 16 19 C -0.10 -1.98 5.07 30.59 0.16 -1.82 16 20 C -0.06 -1.02 5.61 29.85 0.17 -0.86 16 21 C 0.11 2.05 6.18 42.55 0.26 2.31 16 22 C -0.18 -2.50 9.71 22.36 0.22 -2.28 16 23 C -0.08 -0.92 10.18 22.47 0.23 -0.69 16 24 C -0.18 -2.24 10.11 22.36 0.23 -2.01 16 25 C 0.08 1.37 11.18 84.67 0.95 2.32 16 26 N -0.52 -11.36 9.88 -183.88 -1.82 -13.17 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 29 H 0.07 1.91 6.54 -2.39 -0.02 1.90 16 30 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 31 H 0.28 14.52 8.30 -92.71 -0.77 13.76 16 32 H 0.10 5.70 6.19 -2.91 -0.02 5.68 16 33 H 0.10 4.55 6.68 -2.91 -0.02 4.53 16 34 H 0.40 11.26 6.43 -92.71 -0.60 10.67 16 35 H 0.03 1.11 7.93 -2.39 -0.02 1.09 16 36 H 0.03 1.13 7.93 -2.39 -0.02 1.11 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.37 7.95 -2.39 -0.02 1.35 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.14 7.87 -2.39 -0.02 1.12 16 43 H 0.15 1.38 7.95 -2.91 -0.02 1.36 16 44 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 45 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 46 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -70.33 377.32 3.67 -66.65 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.37 Total: 33.68 kcal Atomic # 6 Polarization: -60.58 SS G_CDS: 4.75 Total: -55.83 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -3.48 Total: -87.92 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -70.33 3.67 -66.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168798442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.355 kcal (2) G-P(sol) polarization free energy of solvation -70.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds