Wall clock time and date at job start Fri Apr 10 2020 22:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38339 * 119.93926 * 2 1 4 4 C 1.38305 * 120.25166 * 179.97438 * 3 2 1 5 5 C 1.38043 * 120.11767 * 0.02562 * 4 3 2 6 6 C 1.39329 * 119.87819 * 359.97438 * 5 4 3 7 7 C 1.48344 * 120.12249 * 180.02562 * 6 5 4 8 8 C 1.39331 * 119.73209 * 312.41664 * 7 6 5 9 9 C 1.38398 * 119.07152 * 180.27127 * 8 7 6 10 10 C 1.38783 * 118.51174 * 359.51207 * 9 8 7 11 11 C 1.50693 * 120.31940 * 180.22963 * 10 9 8 12 12 N 1.46903 * 109.47260 * 89.99489 * 11 10 9 13 13 C 1.46892 * 111.00067 * 293.95481 * 12 11 10 14 14 C 1.46897 * 111.00111 * 170.00115 * 12 11 10 15 15 C 1.50698 * 109.47289 * 189.99927 * 14 12 11 16 16 H 1.07997 * 120.00267 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99992 * 179.97438 * 15 14 12 18 18 N 1.31518 * 120.00223 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46854 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47226 * 119.99831 * 19 17 15 22 22 H 1.48495 * 109.47113 * 240.00301 * 19 17 15 23 23 C 1.38251 * 119.36364 * 0.24508 * 10 9 8 24 24 N 1.31763 * 120.89694 * 0.02562 * 23 10 9 25 25 C 1.37994 * 119.93562 * 180.27343 * 2 1 3 26 26 C 1.50699 * 120.06460 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.46572 * 89.99954 * 1 2 3 28 28 H 1.08998 * 109.46630 * 210.00271 * 1 2 3 29 29 H 1.09003 * 109.46679 * 330.00075 * 1 2 3 30 30 H 1.08004 * 119.87763 * 359.97348 * 3 2 1 31 31 H 1.07998 * 119.94422 * 179.97438 * 4 3 2 32 32 H 1.08005 * 120.05652 * 179.97438 * 5 4 3 33 33 H 1.08002 * 120.46275 * 0.02847 * 8 7 6 34 34 H 1.07999 * 120.74422 * 179.78182 * 9 8 7 35 35 H 1.09002 * 109.47179 * 209.99458 * 11 10 9 36 36 H 1.09002 * 109.47311 * 329.99708 * 11 10 9 37 37 H 1.09002 * 109.47292 * 60.00079 * 13 12 11 38 38 H 1.09007 * 109.47264 * 180.02562 * 13 12 11 39 39 H 1.09006 * 109.47414 * 300.00103 * 13 12 11 40 40 H 1.09001 * 109.47311 * 310.00399 * 14 12 11 41 41 H 1.09001 * 109.47591 * 70.00049 * 14 12 11 42 42 H 0.96996 * 120.00260 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.54887 * 180.02562 * 23 10 9 44 44 H 1.08995 * 109.47397 * 269.73209 * 26 25 2 45 45 H 1.08996 * 109.47079 * 29.73860 * 26 25 2 46 46 H 1.08999 * 109.47192 * 149.73449 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1988 0.0000 4 6 3.5805 1.2063 0.0005 5 6 4.2797 0.0160 0.0005 6 6 3.5895 -1.1943 0.0005 7 6 4.3354 -2.4766 0.0011 8 6 5.3886 -2.6638 -0.8916 9 6 6.0715 -3.8675 -0.8832 10 6 5.6848 -4.8421 0.0260 11 6 6.4035 -6.1658 0.0740 12 7 7.5245 -6.0803 1.0195 13 6 8.5488 -5.1438 0.5384 14 6 8.1018 -7.4072 1.2729 15 6 9.0756 -7.3207 2.4198 16 1 9.2481 -6.3748 2.9116 17 6 9.7455 -8.4493 2.8419 18 7 9.5352 -9.6014 2.2434 19 14 10.9521 -8.3423 4.2640 20 1 11.0079 -6.9443 4.7615 21 1 10.5064 -9.2398 5.3599 22 1 12.3006 -8.7577 3.8013 23 6 4.6337 -4.5871 0.8871 24 7 3.9968 -3.4341 0.8545 25 6 2.1957 -1.1958 -0.0057 26 6 1.4422 -2.5009 -0.0125 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6545 2.1324 -0.0004 31 1 4.1145 2.1451 0.0001 32 1 5.3597 0.0231 0.0005 33 1 5.6657 -1.8819 -1.5833 34 1 6.8898 -4.0429 -1.5658 35 1 5.7121 -6.9430 0.3995 36 1 6.7830 -6.4094 -0.9184 37 1 8.1103 -4.1522 0.4257 38 1 9.3674 -5.1000 1.2569 39 1 8.9291 -5.4845 -0.4247 40 1 7.3056 -8.1079 1.5243 41 1 8.6221 -7.7537 0.3800 42 1 10.0068 -10.3954 2.5401 43 1 4.3305 -5.3433 1.5962 44 1 1.2643 -2.8231 1.0134 45 1 0.4880 -2.3669 -0.5220 46 1 2.0294 -3.2568 -0.5340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236980860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:34 Heat of formation + Delta-G solvation = 52.805088 kcal Electronic energy + Delta-G solvation = -24348.837822 eV Core-core repulsion = 21009.694095 eV Total energy + Delta-G solvation = -3339.143727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54960 -39.24095 -36.67568 -33.70455 -33.48498 -32.55317 -32.08048 -30.59795 -27.98313 -27.20289 -26.70913 -26.32853 -24.27251 -23.41319 -22.36446 -20.96651 -20.76332 -20.21286 -16.99342 -16.53639 -16.41020 -15.88406 -15.64182 -15.19318 -14.84594 -14.38757 -14.35645 -14.26085 -13.88449 -13.49342 -13.37161 -13.12289 -13.01339 -12.83387 -12.72760 -12.65908 -12.05843 -11.98505 -11.93555 -11.84708 -11.41012 -11.18573 -11.05918 -11.02852 -10.92714 -10.67147 -10.51499 -9.92558 -9.63034 -9.44711 -9.32143 -9.09704 -8.68944 -8.47723 -8.29656 -7.32184 -6.05956 -4.07253 0.75394 1.22336 1.39645 1.58615 3.29433 3.37023 3.42122 3.51219 3.90348 4.19631 4.41286 4.62450 4.68283 4.79898 4.89049 4.97412 5.05692 5.06040 5.10742 5.18104 5.22394 5.31087 5.35731 5.38367 5.49008 5.55189 5.59774 5.67668 5.73488 5.79098 5.91340 5.97643 6.04053 6.11956 6.15598 6.16458 6.26393 6.31891 6.37060 6.46134 6.55064 6.69386 6.79313 6.88389 7.21556 7.27403 7.75525 8.01649 8.08492 8.13151 8.48406 9.00541 9.57180 11.04915 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.002425 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.020413 B =11542.553681 C =11733.982323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.114 4.114 4 C -0.125 4.125 5 C -0.103 4.103 6 C -0.034 4.034 7 C 0.151 3.849 8 C -0.159 4.159 9 C -0.072 4.072 10 C -0.107 4.107 11 C 0.092 3.908 12 N -0.534 5.534 13 C 0.035 3.965 14 C 0.192 3.808 15 C -0.507 4.507 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.285 1.285 23 C 0.118 3.882 24 N -0.470 5.470 25 C -0.052 4.052 26 C -0.108 4.108 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.011 0.989 40 H 0.032 0.968 41 H -0.008 1.008 42 H 0.261 0.739 43 H 0.159 0.841 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.515 19.029 -8.572 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.132 4.132 4 C -0.143 4.143 5 C -0.122 4.122 6 C -0.035 4.035 7 C 0.014 3.986 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.109 4.109 11 C -0.037 4.037 12 N -0.259 5.259 13 C -0.114 4.114 14 C 0.068 3.932 15 C -0.545 4.545 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.040 4.040 24 N -0.178 5.178 25 C -0.052 4.052 26 C -0.164 4.164 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.010 0.990 42 H 0.071 0.929 43 H 0.176 0.824 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.325 19.124 -7.531 26.248 hybrid contribution 1.969 -0.523 -0.580 2.118 sum -14.356 18.601 -8.111 24.857 Atomic orbital electron populations 1.20809 0.91187 1.02877 1.02205 1.19703 0.96040 0.92428 1.01181 1.21054 0.94258 0.97317 1.00565 1.20990 0.94198 0.97736 1.01394 1.21154 0.99871 0.91372 0.99772 1.18372 0.92263 0.90949 1.01918 1.19608 0.93387 0.92628 0.92954 1.21960 0.96910 0.98377 1.00638 1.21460 0.98168 0.92558 0.97611 1.21053 0.96637 0.97562 0.95684 1.21000 0.94717 0.92413 0.95593 1.62164 1.08636 1.13476 1.41584 1.22280 0.95710 0.95132 0.98249 1.19771 0.94434 0.83183 0.95840 1.21181 1.22587 0.95128 1.15619 0.91797 1.24991 0.97251 0.95289 0.97109 1.69963 1.42882 0.99445 1.41533 0.86440 0.80647 0.78193 0.82148 1.19660 1.20954 1.21110 1.22658 0.91703 0.93538 0.96082 1.67797 1.28634 1.00810 1.20555 1.19798 0.92397 0.95199 0.97836 1.20773 0.98836 0.93815 1.02971 0.91295 0.91163 0.91641 0.86158 0.85890 0.85838 0.85201 0.85054 0.90017 0.94725 0.93621 0.90604 0.97040 0.95043 0.99010 0.92945 0.82359 0.90314 0.92103 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.18 36.01 0.33 -0.50 16 2 C -0.09 -0.93 5.87 -104.67 -0.61 -1.55 16 3 C -0.11 -1.04 9.69 -39.52 -0.38 -1.42 16 4 C -0.13 -1.18 10.03 -39.63 -0.40 -1.57 16 5 C -0.10 -1.13 9.44 -39.25 -0.37 -1.50 16 6 C -0.03 -0.43 5.61 -104.90 -0.59 -1.02 16 7 C 0.15 2.09 5.43 -82.94 -0.45 1.64 16 8 C -0.16 -2.01 9.48 -39.12 -0.37 -2.38 16 9 C -0.07 -0.97 8.13 -39.32 -0.32 -1.29 16 10 C -0.11 -1.63 4.89 -104.42 -0.51 -2.14 16 11 C 0.09 1.58 5.14 -4.98 -0.03 1.55 16 12 N -0.53 -11.30 4.74 -245.83 -1.17 -12.46 16 13 C 0.03 0.67 8.98 60.06 0.54 1.21 16 14 C 0.19 4.92 4.72 -4.98 -0.02 4.89 16 15 C -0.51 -14.11 8.46 -34.44 -0.29 -14.40 16 16 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 19 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.12 1.80 10.85 -17.58 -0.19 1.61 16 24 N -0.47 -7.11 8.66 -9.78 -0.08 -7.20 16 25 C -0.05 -0.60 5.90 -104.28 -0.62 -1.22 16 26 C -0.11 -1.16 8.06 36.01 0.29 -0.87 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.50 6.70 -51.93 -0.35 0.15 16 29 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.12 1.21 7.98 -52.48 -0.42 0.79 16 33 H 0.13 1.33 7.99 -52.49 -0.42 0.91 16 34 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.08 1.37 7.88 -51.93 -0.41 0.96 16 36 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 37 H 0.05 0.78 6.17 -51.93 -0.32 0.46 16 38 H 0.08 1.59 6.76 -51.92 -0.35 1.24 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 41 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.16 2.26 8.06 -52.48 -0.42 1.84 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.53 6.69 -51.93 -0.35 0.18 16 46 H 0.06 0.79 6.68 -51.93 -0.35 0.44 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -30.89 374.04 -11.09 -41.98 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.10 Total: -1.29 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -4.09 Total: -17.51 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.51 Total: -45.38 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.89 -11.09 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236980860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.789 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds