Wall clock time and date at job start Fri Apr 10 2020 22:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38339 * 119.93926 * 2 1 4 4 C 1.38305 * 120.25166 * 179.97438 * 3 2 1 5 5 C 1.38043 * 120.11767 * 0.02562 * 4 3 2 6 6 C 1.39329 * 119.87819 * 359.97438 * 5 4 3 7 7 C 1.48344 * 120.12249 * 180.02562 * 6 5 4 8 8 C 1.39331 * 119.73209 * 312.41664 * 7 6 5 9 9 C 1.38398 * 119.07152 * 180.27127 * 8 7 6 10 10 C 1.38783 * 118.51174 * 359.51207 * 9 8 7 11 11 C 1.50693 * 120.31940 * 180.22963 * 10 9 8 12 12 N 1.46903 * 109.47260 * 89.99489 * 11 10 9 13 13 C 1.46892 * 111.00067 * 293.95481 * 12 11 10 14 14 C 1.46897 * 111.00111 * 170.00115 * 12 11 10 15 15 C 1.50698 * 109.47289 * 189.99927 * 14 12 11 16 16 H 1.07997 * 120.00267 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99992 * 179.97438 * 15 14 12 18 18 N 1.31518 * 120.00223 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46854 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47226 * 119.99831 * 19 17 15 22 22 H 1.48495 * 109.47113 * 240.00301 * 19 17 15 23 23 C 1.38251 * 119.36364 * 0.24508 * 10 9 8 24 24 N 1.31763 * 120.89694 * 0.02562 * 23 10 9 25 25 C 1.37994 * 119.93562 * 180.27343 * 2 1 3 26 26 C 1.50699 * 120.06460 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.46572 * 89.99954 * 1 2 3 28 28 H 1.08998 * 109.46630 * 210.00271 * 1 2 3 29 29 H 1.09003 * 109.46679 * 330.00075 * 1 2 3 30 30 H 1.08004 * 119.87763 * 359.97348 * 3 2 1 31 31 H 1.07998 * 119.94422 * 179.97438 * 4 3 2 32 32 H 1.08005 * 120.05652 * 179.97438 * 5 4 3 33 33 H 1.08002 * 120.46275 * 0.02847 * 8 7 6 34 34 H 1.07999 * 120.74422 * 179.78182 * 9 8 7 35 35 H 1.09002 * 109.47179 * 209.99458 * 11 10 9 36 36 H 1.09002 * 109.47311 * 329.99708 * 11 10 9 37 37 H 1.09002 * 109.47292 * 60.00079 * 13 12 11 38 38 H 1.09007 * 109.47264 * 180.02562 * 13 12 11 39 39 H 1.09006 * 109.47414 * 300.00103 * 13 12 11 40 40 H 1.09001 * 109.47311 * 310.00399 * 14 12 11 41 41 H 1.09001 * 109.47591 * 70.00049 * 14 12 11 42 42 H 0.96996 * 120.00260 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.54887 * 180.02562 * 23 10 9 44 44 H 1.08995 * 109.47397 * 269.73209 * 26 25 2 45 45 H 1.08996 * 109.47079 * 29.73860 * 26 25 2 46 46 H 1.08999 * 109.47192 * 149.73449 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1988 0.0000 4 6 3.5805 1.2063 0.0005 5 6 4.2797 0.0160 0.0005 6 6 3.5895 -1.1943 0.0005 7 6 4.3354 -2.4766 0.0011 8 6 5.3886 -2.6638 -0.8916 9 6 6.0715 -3.8675 -0.8832 10 6 5.6848 -4.8421 0.0260 11 6 6.4035 -6.1658 0.0740 12 7 7.5245 -6.0803 1.0195 13 6 8.5488 -5.1438 0.5384 14 6 8.1018 -7.4072 1.2729 15 6 9.0756 -7.3207 2.4198 16 1 9.2481 -6.3748 2.9116 17 6 9.7455 -8.4493 2.8419 18 7 9.5352 -9.6014 2.2434 19 14 10.9521 -8.3423 4.2640 20 1 11.0079 -6.9443 4.7615 21 1 10.5064 -9.2398 5.3599 22 1 12.3006 -8.7577 3.8013 23 6 4.6337 -4.5871 0.8871 24 7 3.9968 -3.4341 0.8545 25 6 2.1957 -1.1958 -0.0057 26 6 1.4422 -2.5009 -0.0125 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6545 2.1324 -0.0004 31 1 4.1145 2.1451 0.0001 32 1 5.3597 0.0231 0.0005 33 1 5.6657 -1.8819 -1.5833 34 1 6.8898 -4.0429 -1.5658 35 1 5.7121 -6.9430 0.3995 36 1 6.7830 -6.4094 -0.9184 37 1 8.1103 -4.1522 0.4257 38 1 9.3674 -5.1000 1.2569 39 1 8.9291 -5.4845 -0.4247 40 1 7.3056 -8.1079 1.5243 41 1 8.6221 -7.7537 0.3800 42 1 10.0068 -10.3954 2.5401 43 1 4.3305 -5.3433 1.5962 44 1 1.2643 -2.8231 1.0134 45 1 0.4880 -2.3669 -0.5220 46 1 2.0294 -3.2568 -0.5340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236980860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:33 Heat of formation + Delta-G solvation = 36.720177 kcal Electronic energy + Delta-G solvation = -24349.535316 eV Core-core repulsion = 21009.694095 eV Total energy + Delta-G solvation = -3339.841222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56239 -40.13151 -38.26228 -35.04738 -34.40656 -34.06782 -33.23164 -31.70683 -29.27302 -28.76282 -27.82383 -27.20279 -25.87016 -24.48543 -23.74198 -22.12355 -21.74757 -21.46074 -18.55606 -17.88410 -17.58935 -16.90101 -16.66651 -16.51951 -16.24346 -16.00356 -15.63386 -15.17429 -15.10612 -14.78672 -14.47718 -14.11757 -13.97286 -13.84506 -13.78562 -13.58397 -13.44177 -13.36559 -12.99096 -12.89655 -12.76012 -12.69130 -12.60752 -12.46665 -12.28566 -11.99102 -11.81957 -11.76527 -11.32617 -10.75163 -10.62679 -10.47264 -10.20035 -9.44124 -9.27667 -9.02778 -8.21613 -6.31252 -0.21651 0.31467 0.46866 0.64525 1.39873 1.41098 1.54250 2.39265 2.65068 2.86177 3.11112 3.23492 3.46704 3.74948 3.84352 3.94850 3.97347 4.01809 4.07784 4.18775 4.27737 4.37326 4.45366 4.47816 4.59589 4.66507 4.72555 4.74783 4.79459 4.82388 4.86021 4.88898 4.94625 5.01070 5.03981 5.09110 5.17129 5.24100 5.26346 5.34145 5.39738 5.53891 5.60078 5.63233 5.71385 5.78726 6.02905 6.10940 6.28417 6.57785 6.84542 6.99194 7.38292 8.89383 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.002425 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.020413 B =11542.553681 C =11733.982323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.113 4.113 4 C -0.125 4.125 5 C -0.112 4.112 6 C -0.061 4.061 7 C 0.149 3.851 8 C -0.155 4.155 9 C -0.068 4.068 10 C -0.120 4.120 11 C 0.097 3.903 12 N -0.545 5.545 13 C 0.041 3.959 14 C 0.208 3.792 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.277 1.277 23 C 0.108 3.892 24 N -0.487 5.487 25 C -0.071 4.071 26 C -0.101 4.101 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.018 0.982 40 H 0.008 0.992 41 H -0.033 1.033 42 H 0.265 0.735 43 H 0.157 0.843 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.857 21.889 -8.863 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.131 4.131 4 C -0.143 4.143 5 C -0.131 4.131 6 C -0.062 4.062 7 C 0.013 3.987 8 C -0.174 4.174 9 C -0.094 4.094 10 C -0.123 4.123 11 C -0.031 4.031 12 N -0.269 5.269 13 C -0.107 4.107 14 C 0.082 3.918 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.203 1.203 23 C -0.050 4.050 24 N -0.195 5.195 25 C -0.072 4.072 26 C -0.157 4.157 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.166 0.834 31 H 0.167 0.833 32 H 0.149 0.851 33 H 0.175 0.825 34 H 0.167 0.833 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.026 0.974 41 H -0.015 1.015 42 H 0.074 0.926 43 H 0.174 0.826 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.679 21.999 -7.830 28.695 hybrid contribution 1.960 -1.281 -0.545 2.404 sum -14.719 20.718 -8.375 26.758 Atomic orbital electron populations 1.20861 0.89414 1.03615 1.03129 1.20043 0.97476 0.92106 1.00355 1.21445 0.94453 0.98121 0.99125 1.21337 0.94593 0.98186 1.00166 1.21334 1.00445 0.91391 0.99955 1.18521 0.92851 0.90877 1.03956 1.20013 0.93524 0.92811 0.92399 1.22227 0.96095 0.98611 1.00470 1.21658 0.98425 0.92240 0.97092 1.20815 0.97183 0.97067 0.97197 1.20940 0.93364 0.93923 0.94882 1.62041 1.09661 1.11290 1.43904 1.22227 0.94869 0.95873 0.97765 1.19409 0.93135 0.85072 0.94216 1.21470 1.23220 0.95095 1.16277 0.92170 1.25880 0.99056 0.94860 0.99779 1.70078 1.43994 1.00182 1.43091 0.85358 0.78289 0.78411 0.78702 1.18996 1.20396 1.20287 1.22687 0.92054 0.93879 0.96346 1.67815 1.29082 1.01079 1.21518 1.19981 0.92390 0.96051 0.98798 1.20696 0.99434 0.93311 1.02301 0.90171 0.91317 0.90076 0.83437 0.83324 0.85072 0.82478 0.83313 0.90444 0.94006 0.91065 0.92612 0.96374 0.97388 1.01509 0.92647 0.82586 0.91314 0.90204 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.18 71.24 0.65 -0.73 16 2 C -0.10 -1.78 5.87 -19.90 -0.12 -1.90 16 3 C -0.11 -1.73 9.69 22.31 0.22 -1.52 16 4 C -0.13 -1.99 10.03 22.24 0.22 -1.77 16 5 C -0.11 -2.26 9.44 22.49 0.21 -2.04 16 6 C -0.06 -1.49 5.61 -20.05 -0.11 -1.60 16 7 C 0.15 4.05 5.43 41.97 0.23 4.28 16 8 C -0.15 -3.67 9.48 22.57 0.21 -3.45 16 9 C -0.07 -1.74 8.13 22.44 0.18 -1.56 16 10 C -0.12 -3.65 4.89 -19.73 -0.10 -3.75 16 11 C 0.10 3.40 5.14 85.55 0.44 3.84 16 12 N -0.54 -23.46 4.74 -931.66 -4.42 -27.88 16 13 C 0.04 1.57 8.98 127.69 1.15 2.71 16 14 C 0.21 10.99 4.72 85.56 0.40 11.40 16 15 C -0.52 -29.69 8.46 25.60 0.22 -29.47 16 16 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 17 C 0.00 0.13 5.46 84.65 0.46 0.59 16 18 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 19 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 C 0.11 3.36 10.85 84.71 0.92 4.28 16 24 N -0.49 -14.91 8.66 -184.85 -1.60 -16.51 16 25 C -0.07 -1.61 5.90 -19.65 -0.12 -1.72 16 26 C -0.10 -2.18 8.06 71.24 0.57 -1.60 16 27 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.85 6.70 -2.39 -0.02 0.84 16 29 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 30 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.13 2.31 7.98 -2.91 -0.02 2.29 16 33 H 0.16 2.81 7.99 -2.91 -0.02 2.79 16 34 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 35 H 0.08 2.73 7.88 -2.39 -0.02 2.71 16 36 H 0.04 1.40 8.07 -2.39 -0.02 1.38 16 37 H 0.07 2.34 6.17 -2.39 -0.01 2.33 16 38 H 0.06 2.34 6.76 -2.38 -0.02 2.32 16 39 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.01 0.45 7.93 -2.39 -0.02 0.44 16 41 H -0.03 -1.86 8.12 -2.39 -0.02 -1.88 16 42 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 43 H 0.16 4.71 8.06 -2.91 -0.02 4.69 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 1.33 6.69 -2.39 -0.02 1.32 16 46 H 0.05 1.16 6.68 -2.39 -0.02 1.15 16 Total: -1.00 -67.34 374.04 2.90 -64.44 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.96 Total: 13.07 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 5.65 Total: -24.00 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -5.74 Total: -100.05 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.34 2.90 -64.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236980860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.160 kcal (2) G-P(sol) polarization free energy of solvation -67.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds