Wall clock time and date at job start Fri Apr 10 2020 22:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86793 * 120.00101 * 2 1 4 4 H 1.48506 * 109.47014 * 270.00313 * 3 2 1 5 5 H 1.48503 * 109.47308 * 29.99911 * 3 2 1 6 6 H 1.48503 * 109.47259 * 150.00414 * 3 2 1 7 7 C 1.38950 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00123 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00067 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00103 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.46955 * 174.20853 * 12 10 9 14 14 C 1.46840 * 111.00177 * 301.22768 * 13 12 10 15 15 C 1.53035 * 109.52646 * 185.84147 * 14 13 12 16 16 C 1.53118 * 109.27716 * 300.82022 * 15 14 13 17 17 C 1.53123 * 109.16081 * 57.65034 * 16 15 14 18 18 C 1.46850 * 110.99981 * 65.43673 * 13 12 10 19 19 H 1.09001 * 109.46068 * 294.16424 * 18 13 12 20 20 C 1.53003 * 109.46244 * 54.14537 * 18 13 12 21 21 H 1.09004 * 109.46780 * 299.89691 * 20 18 13 22 22 C 1.52999 * 109.47087 * 59.89529 * 20 18 13 23 23 C 1.53005 * 109.46767 * 179.97438 * 22 20 18 24 24 C 1.52997 * 109.47281 * 300.00349 * 23 22 20 25 25 C 1.52997 * 109.46989 * 60.00196 * 24 23 22 26 26 C 1.52997 * 109.46973 * 179.89886 * 20 18 13 27 27 H 1.08995 * 109.47088 * 299.99766 * 26 20 18 28 28 O 1.42896 * 109.47131 * 59.99977 * 26 20 18 29 29 H 0.96994 * 119.99687 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47044 * 54.20980 * 12 10 9 32 32 H 1.08999 * 109.46818 * 294.20316 * 12 10 9 33 33 H 1.09006 * 109.45957 * 305.85541 * 14 13 12 34 34 H 1.08997 * 109.46472 * 65.83087 * 14 13 12 35 35 H 1.09003 * 109.50051 * 60.75705 * 15 14 13 36 36 H 1.08996 * 109.50758 * 180.87874 * 15 14 13 37 37 H 1.08999 * 109.52030 * 177.55895 * 16 15 14 38 38 H 1.08998 * 109.52527 * 297.68598 * 16 15 14 39 39 H 1.08996 * 109.50313 * 182.40012 * 17 16 15 40 40 H 1.09000 * 109.49914 * 62.29259 * 17 16 15 41 41 H 1.09003 * 109.46798 * 60.00785 * 22 20 18 42 42 H 1.09000 * 109.47640 * 299.99897 * 22 20 18 43 43 H 1.09003 * 109.46532 * 180.02562 * 23 22 20 44 44 H 1.08994 * 109.46915 * 60.00891 * 23 22 20 45 45 H 1.09009 * 109.47227 * 180.02562 * 24 23 22 46 46 H 1.09004 * 109.47208 * 299.99746 * 24 23 22 47 47 H 1.08995 * 109.47391 * 59.99958 * 25 24 23 48 48 H 1.09000 * 109.46856 * 179.97438 * 25 24 23 49 49 H 0.96701 * 114.00408 * 179.97438 * 28 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1922 -5.9760 -0.1408 14 6 2.9692 -5.8528 -1.3807 15 6 3.8390 -7.0984 -1.5651 16 6 4.7782 -7.2415 -0.3643 17 6 3.9457 -7.3190 0.9185 18 6 3.0729 -6.0671 1.0309 19 1 3.7096 -5.1835 1.0761 20 6 2.2242 -6.1496 2.3013 21 1 1.6045 -5.2566 2.3829 22 6 1.3282 -7.3881 2.2364 23 6 0.4800 -7.4710 3.5072 24 6 1.3978 -7.5687 4.7274 25 6 2.2937 -6.3302 4.7922 26 6 3.1415 -6.2471 3.5219 27 1 3.7612 -7.1400 3.4403 28 8 3.9783 -5.0903 3.5824 29 1 -0.4849 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.5418 -4.8769 -0.8350 32 1 0.6968 -4.9671 0.9360 33 1 2.2893 -5.7561 -2.2272 34 1 3.6064 -4.9703 -1.3239 35 1 3.2017 -7.9800 -1.6357 36 1 4.4272 -6.9998 -2.4774 37 1 5.3693 -8.1511 -0.4706 38 1 5.4426 -6.3788 -0.3167 39 1 4.6101 -7.3781 1.7805 40 1 3.3102 -8.2041 0.8869 41 1 1.9480 -8.2811 2.1549 42 1 0.6746 -7.3187 1.3668 43 1 -0.1580 -8.3536 3.4611 44 1 -0.1397 -6.5781 3.5891 45 1 0.7935 -7.6282 5.6327 46 1 2.0175 -8.4617 4.6454 47 1 1.6740 -5.4373 4.8742 48 1 2.9472 -6.3996 5.6618 49 1 4.5873 -5.0842 4.3335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253102272.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:36 Heat of formation + Delta-G solvation = -125.941539 kcal Electronic energy + Delta-G solvation = -28416.393360 eV Core-core repulsion = 24762.189678 eV Total energy + Delta-G solvation = -3654.203683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.60766 -39.91652 -38.44177 -36.43215 -35.98209 -34.33849 -33.34475 -33.24854 -30.61372 -29.37029 -28.67860 -26.45596 -24.72251 -24.08607 -23.28921 -21.86873 -21.20823 -20.97519 -20.09241 -19.45892 -18.17174 -17.72988 -16.98128 -16.65975 -16.43018 -15.98166 -15.71419 -15.59099 -15.41686 -15.12658 -14.92051 -14.64502 -14.56707 -14.02472 -13.84265 -13.69030 -13.50003 -13.44309 -13.02081 -12.89661 -12.75905 -12.54944 -12.46060 -12.36529 -12.23845 -12.16526 -11.91973 -11.65123 -11.59866 -11.42077 -11.25777 -11.15244 -10.99996 -10.85066 -10.74391 -10.49355 -9.98240 -8.91254 -8.46769 -5.96906 1.33133 1.36277 1.49414 2.02718 2.27028 3.01218 3.18112 3.27687 3.37299 3.69928 3.84744 4.02024 4.07097 4.11520 4.14211 4.25550 4.35440 4.37811 4.42551 4.45665 4.53667 4.55957 4.62496 4.69136 4.69690 4.74491 4.86910 4.92750 5.02928 5.06839 5.11481 5.15688 5.20219 5.21559 5.26686 5.28150 5.32617 5.37734 5.38112 5.47580 5.53734 5.61701 5.69762 5.93489 6.15157 6.26700 6.58516 6.97262 7.11224 7.54503 8.11053 8.68511 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.004774 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.469342 B = 5863.174417 C = 6820.370183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.330 4.330 8 H 0.073 0.927 9 N -0.574 5.574 10 C 0.411 3.589 11 O -0.615 6.615 12 C 0.045 3.955 13 N -0.488 5.488 14 C 0.035 3.965 15 C -0.103 4.103 16 C -0.119 4.119 17 C -0.102 4.102 18 C 0.081 3.919 19 H 0.037 0.963 20 C -0.071 4.071 21 H 0.037 0.963 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.110 4.110 25 C -0.148 4.148 26 C 0.108 3.892 27 H 0.072 0.928 28 O -0.590 6.590 29 H 0.277 0.723 30 H 0.394 0.606 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.045 0.955 48 H 0.079 0.921 49 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 -19.148 6.545 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.201 1.201 7 C -0.460 4.460 8 H 0.091 0.909 9 N -0.211 5.211 10 C 0.198 3.802 11 O -0.502 6.502 12 C -0.087 4.087 13 N -0.210 5.210 14 C -0.093 4.093 15 C -0.140 4.140 16 C -0.156 4.156 17 C -0.140 4.140 18 C -0.027 4.027 19 H 0.055 0.945 20 C -0.090 4.090 21 H 0.056 0.944 22 C -0.135 4.135 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.186 4.186 26 C 0.050 3.950 27 H 0.090 0.910 28 O -0.397 6.397 29 H 0.087 0.913 30 H 0.227 0.773 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.098 0.902 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.941 -19.294 5.970 20.289 hybrid contribution 0.599 2.359 0.446 2.475 sum 2.539 -16.934 6.416 18.286 Atomic orbital electron populations 1.69676 1.06766 1.29217 1.50475 1.26013 0.96536 1.02313 0.96373 0.84972 0.77811 0.77101 0.78699 1.19480 1.19291 1.20150 1.19593 0.92425 0.84300 1.49705 0.90901 1.42117 1.09183 1.05012 1.64747 1.22144 0.88806 0.87067 0.82178 1.90431 1.15617 1.87612 1.56570 1.22185 0.96045 0.85965 1.04529 1.62574 1.18170 1.37521 1.02757 1.22296 0.96651 0.98625 0.91763 1.21493 0.97282 0.97275 0.97973 1.21555 0.97688 1.01185 0.95210 1.21650 0.97543 0.97323 0.97442 1.21672 0.93699 0.98368 0.88971 0.94527 1.21175 0.96014 0.98948 0.92870 0.94425 1.21487 0.97667 0.96095 0.98259 1.21626 0.97984 1.02010 0.94492 1.21470 0.97748 0.97110 0.98458 1.22237 0.99390 0.99306 0.97658 1.21960 0.90897 0.87675 0.94513 0.91045 1.86702 1.54964 1.45004 1.53018 0.91313 0.77274 0.87825 0.87887 0.91633 0.95336 0.89931 0.91238 0.89717 0.94997 0.91592 0.89563 0.90291 0.90883 0.90000 0.93471 0.90808 0.90385 0.93575 0.90235 0.76623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.43 13.05 21.66 0.28 -51.15 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 44.75 29.55 68.60 2.03 46.78 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.33 -19.63 9.68 84.04 0.81 -18.82 16 8 H 0.07 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.57 -31.02 5.29 -306.98 -1.62 -32.64 16 10 C 0.41 20.50 7.18 87.66 0.63 21.13 16 11 O -0.62 -34.81 11.22 -3.09 -0.03 -34.84 16 12 C 0.04 1.68 5.36 85.56 0.46 2.14 16 13 N -0.49 -16.46 3.93 -875.65 -3.44 -19.90 16 14 C 0.03 1.21 4.98 86.33 0.43 1.64 16 15 C -0.10 -2.73 6.09 30.65 0.19 -2.54 16 16 C -0.12 -3.14 6.00 30.67 0.18 -2.96 16 17 C -0.10 -2.69 4.66 30.65 0.14 -2.54 16 18 C 0.08 2.75 1.14 44.94 0.05 2.80 16 19 H 0.04 1.69 5.30 -2.39 -0.01 1.68 16 20 C -0.07 -2.12 1.23 -10.79 -0.01 -2.13 16 21 H 0.04 1.39 6.21 -2.38 -0.01 1.38 16 22 C -0.10 -2.17 4.64 30.60 0.14 -2.03 16 23 C -0.12 -2.33 5.92 30.60 0.18 -2.15 16 24 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 25 C -0.15 -3.15 5.54 30.58 0.17 -2.98 16 26 C 0.11 2.81 2.54 30.58 0.08 2.89 16 27 H 0.07 1.57 6.44 -2.39 -0.02 1.56 16 28 O -0.59 -19.05 12.65 -148.98 -1.88 -20.93 16 29 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.39 20.41 7.90 -92.71 -0.73 19.67 16 31 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.10 3.66 5.81 -2.39 -0.01 3.64 16 33 H 0.07 2.17 8.12 -2.38 -0.02 2.15 16 34 H 0.03 1.28 5.62 -2.39 -0.01 1.26 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.63 6.47 -2.39 -0.02 1.62 16 40 H 0.09 1.91 6.40 -2.39 -0.02 1.90 16 41 H 0.08 1.51 6.42 -2.39 -0.02 1.49 16 42 H 0.07 1.74 7.46 -2.39 -0.02 1.72 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.39 8.51 9.08 -74.06 -0.67 7.84 16 Total: -1.00 -71.98 359.66 -1.01 -72.99 By element: Atomic # 1 Polarization: 47.59 SS G_CDS: -0.44 Total: 47.15 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 4.10 Total: -7.46 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -4.78 Total: -103.69 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -1.92 Total: -55.77 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.98 -1.01 -72.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253102272.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.952 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds