Wall clock time and date at job start Fri Apr 10 2020 22:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 120.00252 * 2 1 4 4 H 1.48498 * 109.47135 * 270.00379 * 3 2 1 5 5 H 1.48505 * 109.46794 * 29.99936 * 3 2 1 6 6 H 1.48495 * 109.47181 * 149.99549 * 3 2 1 7 7 C 1.38956 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99595 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99942 * 180.02562 * 7 2 1 10 10 C 1.34772 * 119.99730 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00449 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99945 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47343 * 174.63627 * 12 10 9 14 14 C 1.46848 * 110.99845 * 300.71873 * 13 12 10 15 15 C 1.53173 * 109.55689 * 185.84253 * 14 13 12 16 16 C 1.53121 * 109.20190 * 300.85543 * 15 14 13 17 17 C 1.53119 * 109.21579 * 57.62716 * 16 15 14 18 18 C 1.46850 * 110.99879 * 64.92240 * 13 12 10 19 19 H 1.09000 * 109.46506 * 294.17771 * 18 13 12 20 20 C 1.53000 * 109.46255 * 54.14915 * 18 13 12 21 21 H 1.09000 * 109.46924 * 306.50218 * 20 18 13 22 22 C 1.53003 * 109.47234 * 66.49768 * 20 18 13 23 23 C 1.52998 * 109.46869 * 179.97438 * 22 20 18 24 24 C 1.52994 * 109.47670 * 300.00187 * 23 22 20 25 25 C 1.53003 * 109.47127 * 59.99970 * 24 23 22 26 26 C 1.52998 * 109.47317 * 186.50370 * 20 18 13 27 27 H 1.08992 * 109.47541 * 59.99183 * 26 20 18 28 28 O 1.42908 * 109.46681 * 299.99767 * 26 20 18 29 29 H 0.96997 * 120.00089 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99840 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47102 * 54.62943 * 12 10 9 32 32 H 1.09003 * 109.46751 * 294.63582 * 12 10 9 33 33 H 1.09010 * 109.45795 * 305.85194 * 14 13 12 34 34 H 1.09000 * 109.46302 * 65.82953 * 14 13 12 35 35 H 1.08992 * 109.58779 * 180.90771 * 15 14 13 36 36 H 1.08999 * 109.48646 * 60.74269 * 15 14 13 37 37 H 1.08994 * 109.52684 * 297.68700 * 16 15 14 38 38 H 1.09001 * 109.51891 * 177.56042 * 16 15 14 39 39 H 1.09006 * 109.50533 * 62.24961 * 17 16 15 40 40 H 1.09004 * 109.50521 * 182.37005 * 17 16 15 41 41 H 1.09004 * 109.47107 * 300.00223 * 22 20 18 42 42 H 1.09000 * 109.46797 * 60.00373 * 22 20 18 43 43 H 1.09000 * 109.47080 * 60.00578 * 23 22 20 44 44 H 1.09001 * 109.47050 * 179.97438 * 23 22 20 45 45 H 1.09001 * 109.47649 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.47188 * 300.00325 * 24 23 22 47 47 H 1.09000 * 109.46797 * 60.00115 * 25 24 23 48 48 H 1.08997 * 109.47307 * 180.02562 * 25 24 23 49 49 H 0.96697 * 114.00007 * 180.02562 * 28 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0001 12 6 5.5608 -2.3706 0.0022 13 7 6.0504 -3.7495 0.1315 14 6 5.5645 -4.3663 1.3724 15 6 6.2089 -5.7450 1.5462 16 6 5.8526 -6.6226 0.3431 17 6 6.3264 -5.9349 -0.9403 18 6 5.6788 -4.5519 -1.0410 19 1 4.5949 -4.6603 -1.0783 20 6 6.1651 -3.8527 -2.3121 21 1 5.7959 -2.8273 -2.3265 22 6 7.6949 -3.8443 -2.3361 23 6 8.1810 -3.1456 -3.6075 24 6 7.6559 -3.8947 -4.8338 25 6 6.1260 -3.9031 -4.8097 26 6 5.6398 -4.6012 -3.5387 27 1 4.5500 -4.6073 -3.5215 28 8 6.1239 -5.9457 -3.5197 29 1 -0.4850 0.8400 0.0004 30 1 3.8648 -0.3633 0.0014 31 1 5.9234 -1.7761 0.8407 32 1 5.9248 -1.9418 -0.9315 33 1 5.8280 -3.7333 2.2199 34 1 4.4811 -4.4757 1.3237 35 1 5.8364 -6.2100 2.4589 36 1 7.2915 -5.6351 1.6087 37 1 4.7727 -6.7647 0.3028 38 1 6.3440 -7.5907 0.4402 39 1 7.4109 -5.8280 -0.9169 40 1 6.0378 -6.5355 -1.8029 41 1 8.0691 -3.3109 -1.4622 42 1 8.0641 -4.8697 -2.3217 43 1 7.8118 -2.1202 -3.6224 44 1 9.2709 -3.1392 -3.6245 45 1 8.0026 -3.3972 -5.7396 46 1 8.0251 -4.9201 -4.8189 47 1 5.7568 -2.8777 -4.8247 48 1 5.7518 -4.4372 -5.6832 49 1 5.8300 -6.4802 -4.2700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253102273.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:39 Heat of formation + Delta-G solvation = -113.030948 kcal Electronic energy + Delta-G solvation = -28501.028232 eV Core-core repulsion = 24847.384395 eV Total energy + Delta-G solvation = -3653.643837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67137 -40.08709 -38.50044 -36.03008 -35.91700 -34.31856 -33.75852 -33.30560 -30.72826 -29.50129 -28.83713 -26.31192 -24.58203 -23.89306 -23.42820 -21.91751 -21.29394 -20.98197 -20.42422 -19.52103 -17.76365 -17.66913 -17.11703 -16.71323 -16.49841 -16.06027 -15.94056 -15.55010 -15.35236 -15.06015 -14.94686 -14.80416 -14.47250 -14.38628 -13.78673 -13.70301 -13.55475 -13.10742 -13.05716 -12.85255 -12.80838 -12.63379 -12.51485 -12.45075 -12.24519 -12.03086 -11.85566 -11.64953 -11.49786 -11.38953 -11.26521 -11.04927 -10.95162 -10.84009 -10.69897 -10.29167 -10.21289 -8.93413 -8.44821 -6.04777 1.27313 1.31575 1.40977 1.90340 2.19519 2.95963 2.98944 3.12265 3.39725 3.78298 3.86505 3.94793 4.09053 4.11900 4.16313 4.24335 4.26581 4.39345 4.44052 4.53099 4.56868 4.62768 4.66695 4.69241 4.76288 4.78870 4.91388 4.98176 5.01252 5.06030 5.11886 5.17399 5.18524 5.30000 5.30679 5.39423 5.42434 5.46816 5.50490 5.54217 5.61297 5.73671 5.74929 5.91842 6.12772 6.26334 6.55767 6.85873 6.97922 7.36649 7.93469 8.72890 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.004952 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.287656 B = 5653.440670 C = 6725.577965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.232 1.232 7 C -0.326 4.326 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.420 3.580 11 O -0.609 6.609 12 C 0.038 3.962 13 N -0.491 5.491 14 C 0.037 3.963 15 C -0.104 4.104 16 C -0.123 4.123 17 C -0.105 4.105 18 C 0.084 3.916 19 H 0.026 0.974 20 C -0.073 4.073 21 H 0.062 0.938 22 C -0.093 4.093 23 C -0.121 4.121 24 C -0.107 4.107 25 C -0.146 4.146 26 C 0.115 3.885 27 H 0.023 0.977 28 O -0.552 6.552 29 H 0.279 0.721 30 H 0.388 0.612 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.755 -6.060 -7.128 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.782 3.218 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.156 1.156 7 C -0.455 4.455 8 H 0.071 0.929 9 N -0.231 5.231 10 C 0.208 3.792 11 O -0.495 6.495 12 C -0.094 4.094 13 N -0.213 5.213 14 C -0.091 4.091 15 C -0.142 4.142 16 C -0.160 4.160 17 C -0.142 4.142 18 C -0.024 4.024 19 H 0.044 0.956 20 C -0.091 4.091 21 H 0.080 0.920 22 C -0.130 4.130 23 C -0.158 4.158 24 C -0.144 4.144 25 C -0.184 4.184 26 C 0.056 3.944 27 H 0.041 0.959 28 O -0.360 6.360 29 H 0.088 0.912 30 H 0.223 0.777 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 20.966 -6.449 -6.546 22.891 hybrid contribution -2.165 0.925 -0.301 2.373 sum 18.801 -5.524 -6.846 20.757 Atomic orbital electron populations 1.69804 1.08138 1.29215 1.50332 1.26103 0.96429 1.02646 0.96076 0.85410 0.79518 0.76904 0.80016 1.18048 1.19983 1.15566 1.18980 0.81673 0.94711 1.50159 0.92923 1.42272 1.05825 1.07857 1.67194 1.22308 0.92290 0.83385 0.81265 1.90481 1.71566 1.32047 1.55365 1.22397 0.87335 0.93893 1.05736 1.62558 1.55645 1.00401 1.02691 1.22298 0.98237 0.96698 0.91898 1.21526 1.01200 0.93526 0.97948 1.21619 0.99357 0.99124 0.95924 1.21924 1.00337 0.94085 0.97893 1.21712 0.97491 0.94153 0.89092 0.95573 1.21248 0.98025 0.97506 0.92368 0.91959 1.21389 0.92502 1.01467 0.97663 1.21584 1.00703 0.98909 0.94607 1.21388 0.93852 1.01270 0.97928 1.22174 0.97846 1.01056 0.97285 1.21550 0.94932 0.83050 0.94881 0.95853 1.86550 1.76742 1.22252 1.50425 0.91173 0.77674 0.86747 0.86495 0.91192 0.95460 0.91542 0.90287 0.95237 0.90564 0.91077 0.88262 0.91593 0.91163 0.92678 0.90978 0.91405 0.91210 0.92084 0.90536 0.76922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.96 21.66 0.30 -56.40 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 3 Si 0.96 39.15 27.74 68.60 1.90 41.06 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.23 -8.03 6.52 99.48 0.65 -7.39 16 7 C -0.33 -19.19 10.16 84.04 0.85 -18.34 16 8 H 0.05 3.71 7.39 -2.91 -0.02 3.68 16 9 N -0.59 -28.09 5.09 -306.98 -1.56 -29.65 16 10 C 0.42 18.98 7.18 87.66 0.63 19.61 16 11 O -0.61 -32.99 11.22 -3.07 -0.03 -33.02 16 12 C 0.04 1.24 5.47 85.56 0.47 1.71 16 13 N -0.49 -15.52 4.21 -875.34 -3.69 -19.20 16 14 C 0.04 1.24 4.99 86.37 0.43 1.67 16 15 C -0.10 -2.85 6.11 30.69 0.19 -2.66 16 16 C -0.12 -3.44 6.00 30.67 0.18 -3.25 16 17 C -0.11 -2.93 4.29 30.65 0.13 -2.80 16 18 C 0.08 2.71 1.21 44.94 0.05 2.77 16 19 H 0.03 1.14 5.72 -2.39 -0.01 1.13 16 20 C -0.07 -1.98 1.61 -10.79 -0.02 -2.00 16 21 H 0.06 1.87 5.85 -2.39 -0.01 1.85 16 22 C -0.09 -2.05 4.43 30.59 0.14 -1.91 16 23 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 24 C -0.11 -1.80 5.78 30.59 0.18 -1.62 16 25 C -0.15 -2.85 5.63 30.58 0.17 -2.68 16 26 C 0.12 2.84 3.21 30.58 0.10 2.94 16 27 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 28 O -0.55 -11.51 8.27 -148.98 -1.23 -12.74 16 29 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.39 15.47 5.76 -92.71 -0.53 14.94 16 31 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.12 3.30 5.79 -2.39 -0.01 3.28 16 33 H 0.07 2.18 8.12 -2.38 -0.02 2.16 16 34 H 0.03 1.19 5.64 -2.39 -0.01 1.17 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.84 6.29 -2.38 -0.01 1.83 16 40 H 0.10 2.75 5.03 -2.37 -0.01 2.73 16 41 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 42 H 0.07 1.60 5.86 -2.39 -0.01 1.58 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 1.16 7.68 -2.39 -0.02 1.14 16 47 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.38 5.05 9.08 -74.02 -0.67 4.38 16 Total: -1.00 -73.60 352.57 -0.46 -74.06 By element: Atomic # 1 Polarization: 45.09 SS G_CDS: -0.30 Total: 44.79 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 4.15 Total: -8.89 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -4.95 Total: -105.26 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.27 Total: -45.76 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.90 Total: 41.06 kcal Total: -73.60 -0.46 -74.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253102273.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.968 kcal (2) G-P(sol) polarization free energy of solvation -73.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds