Wall clock time and date at job start Fri Apr 10 2020 22:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46891 * 111.00044 * 2 1 4 4 C 1.46899 * 110.99604 * 123.95166 * 2 1 3 5 5 H 1.09000 * 109.46877 * 33.43852 * 4 2 1 6 6 C 1.52993 * 109.47300 * 273.43366 * 4 2 1 7 7 N 1.46897 * 109.47322 * 55.27982 * 6 4 2 8 8 C 1.46894 * 111.00617 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47703 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46913 * 299.99779 * 9 8 7 11 11 C 1.52998 * 109.46668 * 59.99600 * 9 8 7 12 12 C 1.53000 * 109.47272 * 179.97438 * 9 8 7 13 13 C 1.50694 * 109.47079 * 180.02562 * 12 9 8 14 14 H 1.08001 * 119.99835 * 359.97438 * 13 12 9 15 15 C 1.37876 * 120.00409 * 180.02562 * 13 12 9 16 16 N 1.31510 * 120.00650 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99469 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47065 * 90.00471 * 17 15 13 19 19 H 1.48497 * 109.46760 * 209.99946 * 17 15 13 20 20 H 1.48497 * 109.47174 * 330.00168 * 17 15 13 21 21 C 1.50708 * 109.46911 * 153.43504 * 4 2 1 22 22 C 1.38424 * 122.53539 * 201.06522 * 21 4 2 23 23 C 1.33394 * 114.91529 * 180.02562 * 22 21 4 24 24 S 1.75885 * 109.59591 * 0.02562 * 23 22 21 25 25 C 1.33387 * 122.53941 * 21.08208 * 21 4 2 26 26 H 1.08999 * 109.47108 * 298.07278 * 1 2 3 27 27 H 1.09004 * 109.46761 * 58.07244 * 1 2 3 28 28 H 1.09000 * 109.47445 * 178.07128 * 1 2 3 29 29 H 1.09007 * 109.47388 * 175.74405 * 3 2 1 30 30 H 1.08998 * 109.47599 * 295.74158 * 3 2 1 31 31 H 1.09001 * 109.47418 * 55.74535 * 3 2 1 32 32 H 1.09004 * 109.46941 * 175.27545 * 6 4 2 33 33 H 1.09001 * 109.47351 * 295.27517 * 6 4 2 34 34 H 1.00893 * 111.00130 * 56.04208 * 7 6 4 35 35 H 1.09003 * 109.46996 * 300.00214 * 8 7 6 36 36 H 1.09003 * 109.47198 * 59.99180 * 8 7 6 37 37 H 1.09003 * 109.47153 * 59.99798 * 10 9 8 38 38 H 1.09001 * 109.46967 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.46980 * 299.99859 * 10 9 8 40 40 H 1.09003 * 109.47208 * 60.00796 * 11 9 8 41 41 H 1.09001 * 109.46686 * 180.02562 * 11 9 8 42 42 H 1.08993 * 109.47307 * 300.00289 * 11 9 8 43 43 H 1.09003 * 109.46676 * 299.99954 * 12 9 8 44 44 H 1.08993 * 109.47529 * 59.99574 * 12 9 8 45 45 H 0.96999 * 120.00303 * 179.97438 * 16 15 13 46 46 H 1.07997 * 122.54667 * 0.03580 * 22 21 4 47 47 H 1.08002 * 125.19931 * 180.26112 * 23 22 21 48 48 H 1.08001 * 125.20017 * 0.02562 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.3249 -1.5967 1.3576 6 6 2.0974 0.1452 2.3624 7 7 0.7881 0.7552 2.6294 8 6 0.8481 1.6392 3.8011 9 6 -0.5307 2.2551 4.0467 10 6 -0.9540 3.0639 2.8188 11 6 -1.5489 1.1414 4.2996 12 6 -0.4682 3.1753 5.2674 13 6 -1.8265 3.7814 5.5096 14 1 -2.6517 3.5352 4.8578 15 6 -2.0156 4.6510 6.5627 16 7 -3.2008 5.1804 6.7739 17 14 -0.5881 5.0774 7.6897 18 1 0.1235 6.2677 7.1586 19 1 -1.1034 5.3750 9.0502 20 1 0.3504 3.9285 7.7561 21 6 3.3619 -1.3006 0.7940 22 6 3.9265 -2.3792 1.4528 23 6 5.1423 -2.7245 1.0261 24 16 5.6364 -1.6524 -0.2778 25 6 4.1188 -0.7702 -0.1677 26 1 -0.3633 0.4836 0.9068 27 1 -0.3633 0.5435 -0.8722 28 1 -0.3634 -1.0271 -0.0346 29 1 3.0825 1.3433 0.0763 30 1 1.7090 1.8706 -0.9256 31 1 1.5856 1.9179 0.8494 32 1 2.4079 -0.4417 3.2270 33 1 2.8313 0.9284 2.1725 34 1 0.0769 0.0490 2.7451 35 1 1.1502 1.0632 4.6758 36 1 1.5733 2.4328 3.6207 37 1 -0.9986 2.4080 1.9494 38 1 -1.9366 3.5023 2.9936 39 1 -0.2286 3.8573 2.6386 40 1 -1.2473 0.5653 5.1744 41 1 -2.5313 1.5802 4.4742 42 1 -1.5934 0.4856 3.4303 43 1 -0.1668 2.5987 6.1419 44 1 0.2572 3.9687 5.0877 45 1 -3.3339 5.7919 7.5150 46 1 3.4211 -2.9016 2.2515 47 1 5.7314 -3.5402 1.4185 48 1 3.8427 0.0729 -0.7835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266173780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:43 Heat of formation + Delta-G solvation = 44.466772 kcal Electronic energy + Delta-G solvation = -24445.957313 eV Core-core repulsion = 21241.895961 eV Total energy + Delta-G solvation = -3204.061353 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.177 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.81219 -37.75126 -36.50876 -33.81889 -32.14204 -30.42612 -28.68033 -27.72232 -27.30418 -26.43324 -25.56547 -23.68094 -23.45557 -21.78975 -20.64293 -18.83557 -18.05266 -17.64599 -16.82589 -16.34666 -15.53369 -15.43634 -14.75047 -14.52678 -14.07799 -14.05547 -13.60413 -13.33942 -13.13838 -12.98457 -12.87342 -12.62173 -12.36302 -12.31870 -12.05423 -12.00840 -11.67448 -11.54477 -11.33991 -11.29107 -11.09807 -10.96952 -10.89243 -10.74134 -10.54197 -10.39947 -9.83447 -9.73019 -9.35459 -8.96686 -8.90402 -8.61804 -8.52108 -8.49109 -7.87906 -6.02343 -3.98709 0.89382 1.52841 1.85062 2.54567 3.30159 3.38043 3.40998 3.98598 4.24694 4.46009 4.80627 4.92795 4.98919 5.09693 5.23657 5.30654 5.32697 5.41567 5.50538 5.53199 5.61449 5.64120 5.73844 5.75611 5.82240 5.88019 5.96892 6.08516 6.15887 6.17369 6.22188 6.23483 6.35288 6.38942 6.54322 6.63541 6.74372 7.01257 7.06191 7.07688 7.10964 7.14066 7.21157 7.28557 7.40591 7.51538 7.82693 8.56963 9.03327 9.60794 11.10732 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.002887 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.178293 B = 9697.496299 C =10211.419685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.528 5.528 3 C 0.008 3.992 4 C 0.144 3.856 5 H 0.084 0.916 6 C 0.034 3.966 7 N -0.681 5.681 8 C 0.067 3.933 9 C -0.047 4.047 10 C -0.116 4.116 11 C -0.130 4.130 12 C -0.004 4.004 13 C -0.507 4.507 14 H 0.078 0.922 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.268 1.268 21 C -0.092 4.092 22 C -0.126 4.126 23 C -0.215 4.215 24 S 0.071 5.929 25 C -0.184 4.184 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.339 0.661 35 H 0.024 0.976 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.012 0.988 44 H 0.009 0.991 45 H 0.262 0.738 46 H 0.137 0.863 47 H 0.161 0.839 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.944 -15.061 -13.952 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.250 5.250 3 C -0.140 4.140 4 C 0.031 3.969 5 H 0.102 0.898 6 C -0.097 4.097 7 N -0.313 5.313 8 C -0.062 4.062 9 C -0.048 4.048 10 C -0.174 4.174 11 C -0.187 4.187 12 C -0.042 4.042 13 C -0.545 4.545 14 H 0.096 0.904 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.703 3.297 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.192 1.192 21 C -0.105 4.105 22 C -0.158 4.158 23 C -0.350 4.350 24 S 0.334 5.666 25 C -0.319 4.319 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.030 0.970 44 H 0.028 0.972 45 H 0.071 0.929 46 H 0.155 0.845 47 H 0.179 0.821 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 16.402 -14.542 -15.633 26.924 hybrid contribution -0.635 -0.079 3.117 3.182 sum 15.767 -14.621 -12.516 24.880 Atomic orbital electron populations 1.22619 0.86899 1.01316 1.02739 1.62236 1.08571 1.14039 1.40176 1.22644 0.99559 0.89561 1.02198 1.20285 0.91797 0.95652 0.89117 0.89842 1.22604 0.93032 0.97549 0.96528 1.60785 1.05551 1.23739 1.41257 1.22150 0.99147 0.95358 0.89498 1.20408 0.91688 0.95480 0.97212 1.21618 1.01530 0.98403 0.95822 1.21773 1.01081 0.97235 0.98606 1.19618 0.97910 0.94155 0.92477 1.21123 0.94871 1.25488 1.13041 0.90432 1.25015 0.95296 0.95830 0.97416 1.69903 1.22025 1.31689 1.30859 0.86853 0.83362 0.79108 0.80356 1.20438 1.21560 1.19238 1.18776 0.97194 0.96973 0.97573 1.20039 0.95442 0.98262 1.02019 1.25495 1.00804 1.05665 1.03079 1.84282 1.19624 1.27048 1.35621 1.25693 0.96151 1.05747 1.04287 0.91401 0.92169 0.92694 0.92279 0.92343 0.91759 0.95125 0.90509 0.84099 0.95817 0.91668 0.93779 0.92124 0.94299 0.94176 0.91131 0.94703 0.97014 0.97227 0.92866 0.84505 0.82147 0.81027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.21 60.07 0.55 0.68 16 2 N -0.53 -5.59 4.39 -244.59 -1.07 -6.67 16 3 C 0.01 0.09 7.49 60.06 0.45 0.54 16 4 C 0.14 1.47 2.45 -68.86 -0.17 1.30 16 5 H 0.08 0.84 7.74 -51.93 -0.40 0.44 16 6 C 0.03 0.38 4.36 -3.83 -0.02 0.36 16 7 N -0.68 -8.37 2.14 -113.78 -0.24 -8.62 16 8 C 0.07 1.03 4.65 -3.83 -0.02 1.01 16 9 C -0.05 -0.87 0.60 -154.51 -0.09 -0.96 16 10 C -0.12 -2.11 8.06 37.16 0.30 -1.81 16 11 C -0.13 -2.26 7.89 37.16 0.29 -1.97 16 12 C 0.00 -0.09 3.11 -27.89 -0.09 -0.17 16 13 C -0.51 -13.78 8.20 -34.44 -0.28 -14.06 16 14 H 0.08 2.25 5.92 -52.49 -0.31 1.94 16 15 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 16 N -0.91 -27.56 13.96 55.43 0.77 -26.78 16 17 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 21 C -0.09 -0.94 4.98 -106.24 -0.53 -1.47 16 22 C -0.13 -1.18 9.98 -41.21 -0.41 -1.59 16 23 C -0.22 -1.85 11.23 29.04 0.33 -1.53 16 24 S 0.07 0.63 23.34 -107.50 -2.51 -1.88 16 25 C -0.18 -1.83 9.57 29.04 0.28 -1.55 16 26 H 0.07 0.78 4.83 -51.93 -0.25 0.53 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.54 8.01 -51.93 -0.42 0.12 16 29 H 0.06 0.59 5.33 -51.93 -0.28 0.32 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.79 5.98 -51.93 -0.31 0.48 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.92 6.73 -51.93 -0.35 0.57 16 34 H 0.34 4.08 6.02 -39.30 -0.24 3.85 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.70 7.15 -51.93 -0.37 0.33 16 38 H 0.06 1.25 6.62 -51.93 -0.34 0.90 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 42 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 43 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 44 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 46 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 48 H 0.17 1.67 5.61 -52.49 -0.29 1.38 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -28.71 368.63 -9.66 -38.36 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.99 Total: 2.53 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 0.50 Total: -19.46 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.54 Total: -42.07 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.51 Total: -1.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.71 -9.66 -38.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266173780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.829 kcal (2) G-P(sol) polarization free energy of solvation -28.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds