Wall clock time and date at job start Fri Apr 10 2020 22:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46891 * 111.00044 * 2 1 4 4 C 1.46899 * 110.99604 * 123.95166 * 2 1 3 5 5 H 1.09000 * 109.46877 * 33.43852 * 4 2 1 6 6 C 1.52993 * 109.47300 * 273.43366 * 4 2 1 7 7 N 1.46897 * 109.47322 * 55.27982 * 6 4 2 8 8 C 1.46894 * 111.00617 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47703 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46913 * 299.99779 * 9 8 7 11 11 C 1.52998 * 109.46668 * 59.99600 * 9 8 7 12 12 C 1.53000 * 109.47272 * 179.97438 * 9 8 7 13 13 C 1.50694 * 109.47079 * 180.02562 * 12 9 8 14 14 H 1.08001 * 119.99835 * 359.97438 * 13 12 9 15 15 C 1.37876 * 120.00409 * 180.02562 * 13 12 9 16 16 N 1.31510 * 120.00650 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99469 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47065 * 90.00471 * 17 15 13 19 19 H 1.48497 * 109.46760 * 209.99946 * 17 15 13 20 20 H 1.48497 * 109.47174 * 330.00168 * 17 15 13 21 21 C 1.50708 * 109.46911 * 153.43504 * 4 2 1 22 22 C 1.38424 * 122.53539 * 201.06522 * 21 4 2 23 23 C 1.33394 * 114.91529 * 180.02562 * 22 21 4 24 24 S 1.75885 * 109.59591 * 0.02562 * 23 22 21 25 25 C 1.33387 * 122.53941 * 21.08208 * 21 4 2 26 26 H 1.08999 * 109.47108 * 298.07278 * 1 2 3 27 27 H 1.09004 * 109.46761 * 58.07244 * 1 2 3 28 28 H 1.09000 * 109.47445 * 178.07128 * 1 2 3 29 29 H 1.09007 * 109.47388 * 175.74405 * 3 2 1 30 30 H 1.08998 * 109.47599 * 295.74158 * 3 2 1 31 31 H 1.09001 * 109.47418 * 55.74535 * 3 2 1 32 32 H 1.09004 * 109.46941 * 175.27545 * 6 4 2 33 33 H 1.09001 * 109.47351 * 295.27517 * 6 4 2 34 34 H 1.00893 * 111.00130 * 56.04208 * 7 6 4 35 35 H 1.09003 * 109.46996 * 300.00214 * 8 7 6 36 36 H 1.09003 * 109.47198 * 59.99180 * 8 7 6 37 37 H 1.09003 * 109.47153 * 59.99798 * 10 9 8 38 38 H 1.09001 * 109.46967 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.46980 * 299.99859 * 10 9 8 40 40 H 1.09003 * 109.47208 * 60.00796 * 11 9 8 41 41 H 1.09001 * 109.46686 * 180.02562 * 11 9 8 42 42 H 1.08993 * 109.47307 * 300.00289 * 11 9 8 43 43 H 1.09003 * 109.46676 * 299.99954 * 12 9 8 44 44 H 1.08993 * 109.47529 * 59.99574 * 12 9 8 45 45 H 0.96999 * 120.00303 * 179.97438 * 16 15 13 46 46 H 1.07997 * 122.54667 * 0.03580 * 22 21 4 47 47 H 1.08002 * 125.19931 * 180.26112 * 23 22 21 48 48 H 1.08001 * 125.20017 * 0.02562 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.3249 -1.5967 1.3576 6 6 2.0974 0.1452 2.3624 7 7 0.7881 0.7552 2.6294 8 6 0.8481 1.6392 3.8011 9 6 -0.5307 2.2551 4.0467 10 6 -0.9540 3.0639 2.8188 11 6 -1.5489 1.1414 4.2996 12 6 -0.4682 3.1753 5.2674 13 6 -1.8265 3.7814 5.5096 14 1 -2.6517 3.5352 4.8578 15 6 -2.0156 4.6510 6.5627 16 7 -3.2008 5.1804 6.7739 17 14 -0.5881 5.0774 7.6897 18 1 0.1235 6.2677 7.1586 19 1 -1.1034 5.3750 9.0502 20 1 0.3504 3.9285 7.7561 21 6 3.3619 -1.3006 0.7940 22 6 3.9265 -2.3792 1.4528 23 6 5.1423 -2.7245 1.0261 24 16 5.6364 -1.6524 -0.2778 25 6 4.1188 -0.7702 -0.1677 26 1 -0.3633 0.4836 0.9068 27 1 -0.3633 0.5435 -0.8722 28 1 -0.3634 -1.0271 -0.0346 29 1 3.0825 1.3433 0.0763 30 1 1.7090 1.8706 -0.9256 31 1 1.5856 1.9179 0.8494 32 1 2.4079 -0.4417 3.2270 33 1 2.8313 0.9284 2.1725 34 1 0.0769 0.0490 2.7451 35 1 1.1502 1.0632 4.6758 36 1 1.5733 2.4328 3.6207 37 1 -0.9986 2.4080 1.9494 38 1 -1.9366 3.5023 2.9936 39 1 -0.2286 3.8573 2.6386 40 1 -1.2473 0.5653 5.1744 41 1 -2.5313 1.5802 4.4742 42 1 -1.5934 0.4856 3.4303 43 1 -0.1668 2.5987 6.1419 44 1 0.2572 3.9687 5.0877 45 1 -3.3339 5.7919 7.5150 46 1 3.4211 -2.9016 2.2515 47 1 5.7314 -3.5402 1.4185 48 1 3.8427 0.0729 -0.7835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266173780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:42 Heat of formation + Delta-G solvation = 28.589687 kcal Electronic energy + Delta-G solvation = -24446.645795 eV Core-core repulsion = 21241.895961 eV Total energy + Delta-G solvation = -3204.749835 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65809 -39.01868 -37.42205 -35.20404 -34.01221 -31.25039 -29.90619 -29.10978 -28.25977 -27.91369 -26.80493 -24.75985 -24.41478 -23.33002 -21.44717 -19.70681 -19.31157 -18.87772 -18.48178 -17.23268 -16.59671 -16.47825 -16.13999 -15.63036 -15.56165 -15.08807 -14.82770 -14.65442 -14.35308 -14.12533 -13.96665 -13.75172 -13.53699 -13.46208 -13.22761 -12.87790 -12.85688 -12.79033 -12.59567 -12.42771 -12.33765 -12.25667 -12.12527 -12.08127 -11.98663 -11.72738 -11.46386 -11.37308 -10.99978 -10.83412 -10.70935 -9.62417 -9.56437 -9.21812 -8.78373 -8.22549 -6.22634 0.20505 0.85635 1.16889 1.34542 1.36069 1.46698 1.83351 2.38238 3.12625 3.13419 3.28116 3.96257 4.12367 4.16722 4.19049 4.26164 4.32164 4.36835 4.43443 4.63008 4.64355 4.70702 4.75721 4.79635 4.84277 4.88589 4.92074 4.95318 5.03854 5.08375 5.12198 5.18223 5.20717 5.30244 5.35651 5.40067 5.45992 5.52866 5.54850 5.62427 5.64238 5.76569 5.81827 6.03991 6.23978 6.30143 6.40881 6.48342 6.84982 7.39975 8.93652 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.002887 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.178293 B = 9697.496299 C =10211.419685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.530 5.530 3 C 0.014 3.986 4 C 0.150 3.850 5 H 0.089 0.911 6 C 0.042 3.958 7 N -0.674 5.674 8 C 0.081 3.919 9 C -0.045 4.045 10 C -0.106 4.106 11 C -0.123 4.123 12 C -0.003 4.003 13 C -0.502 4.502 14 H 0.045 0.955 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.939 3.061 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.250 1.250 21 C -0.100 4.100 22 C -0.139 4.139 23 C -0.214 4.214 24 S 0.077 5.923 25 C -0.197 4.197 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.344 0.656 35 H 0.025 0.975 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.035 0.965 40 H 0.042 0.958 41 H 0.035 0.965 42 H 0.067 0.933 43 H 0.011 0.989 44 H 0.009 0.991 45 H 0.262 0.738 46 H 0.150 0.850 47 H 0.182 0.818 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.299 -16.816 -14.386 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.252 5.252 3 C -0.134 4.134 4 C 0.038 3.962 5 H 0.107 0.893 6 C -0.089 4.089 7 N -0.307 5.307 8 C -0.048 4.048 9 C -0.046 4.046 10 C -0.163 4.163 11 C -0.180 4.180 12 C -0.041 4.041 13 C -0.540 4.540 14 H 0.064 0.936 15 C -0.195 4.195 16 N -0.597 5.597 17 Si 0.764 3.236 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.174 1.174 21 C -0.113 4.113 22 C -0.170 4.170 23 C -0.349 4.349 24 S 0.340 5.660 25 C -0.332 4.332 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.029 0.971 44 H 0.027 0.973 45 H 0.071 0.929 46 H 0.168 0.832 47 H 0.199 0.801 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 18.774 -16.317 -16.085 29.621 hybrid contribution -1.395 0.419 3.151 3.471 sum 17.379 -15.899 -12.934 26.871 Atomic orbital electron populations 1.22597 0.86793 1.01740 1.02219 1.62241 1.08630 1.13937 1.40439 1.22577 0.99798 0.89425 1.01593 1.20230 0.92150 0.95425 0.88395 0.89306 1.22543 0.91874 0.97387 0.97095 1.60720 1.06543 1.23871 1.39535 1.21841 0.96491 0.95734 0.90698 1.20318 0.94070 0.95067 0.95129 1.21498 0.99338 0.98638 0.96827 1.21680 0.98799 0.97264 1.00261 1.19592 0.95047 0.94811 0.94642 1.21426 0.96072 1.24704 1.11783 0.93646 1.25908 0.97904 0.96183 0.99463 1.70058 1.24447 1.33145 1.32003 0.85819 0.80220 0.79476 0.78052 1.19714 1.21490 1.17396 1.18857 0.97112 0.97434 0.97891 1.20209 0.95867 0.98330 1.02591 1.25816 1.00774 1.05815 1.02491 1.84270 1.18958 1.26937 1.35788 1.25764 0.96846 1.06074 1.04547 0.92297 0.92239 0.91855 0.91798 0.92161 0.93276 0.94756 0.91214 0.83561 0.95685 0.91961 0.91289 0.95534 0.94622 0.93890 0.94600 0.91395 0.97081 0.97269 0.92913 0.83238 0.80070 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.21 127.69 1.18 1.45 16 2 N -0.53 -10.17 4.39 -927.74 -4.08 -14.25 16 3 C 0.01 0.28 7.49 127.69 0.96 1.24 16 4 C 0.15 2.71 2.45 44.17 0.11 2.82 16 5 H 0.09 1.53 7.74 -2.39 -0.02 1.51 16 6 C 0.04 0.82 4.36 86.30 0.38 1.20 16 7 N -0.67 -14.94 2.14 -513.91 -1.10 -16.04 16 8 C 0.08 2.31 4.65 86.30 0.40 2.71 16 9 C -0.05 -1.62 0.60 -52.18 -0.03 -1.65 16 10 C -0.11 -3.79 8.06 71.98 0.58 -3.21 16 11 C -0.12 -4.18 7.89 71.98 0.57 -3.61 16 12 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 13 C -0.50 -27.88 8.20 25.60 0.21 -27.67 16 14 H 0.05 2.76 5.92 -2.91 -0.02 2.75 16 15 C 0.00 0.06 5.47 84.66 0.46 0.53 16 16 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 17 Si 0.94 44.62 27.47 68.60 1.88 46.50 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 21 C -0.10 -1.81 4.98 -20.92 -0.10 -1.91 16 22 C -0.14 -2.24 9.98 21.22 0.21 -2.03 16 23 C -0.21 -3.13 11.23 66.72 0.75 -2.38 16 24 S 0.08 1.22 23.34 -56.49 -1.32 -0.10 16 25 C -0.20 -3.59 9.57 66.72 0.64 -2.95 16 26 H 0.06 1.21 4.83 -2.39 -0.01 1.20 16 27 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.06 1.08 8.01 -2.39 -0.02 1.06 16 29 H 0.06 1.19 5.33 -2.38 -0.01 1.18 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.12 5.98 -2.39 -0.01 1.11 16 32 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 1.51 6.73 -2.39 -0.02 1.50 16 34 H 0.34 7.24 6.02 -89.70 -0.54 6.70 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.10 7.15 -2.39 -0.02 2.09 16 38 H 0.03 1.11 6.62 -2.39 -0.02 1.09 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.03 1.46 6.62 -2.39 -0.02 1.44 16 42 H 0.07 1.83 6.57 -2.39 -0.02 1.82 16 43 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 44 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 45 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 47 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 48 H 0.17 3.07 5.61 -2.91 -0.02 3.06 16 Total: -1.00 -62.70 368.63 2.43 -60.26 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.35 Total: 18.69 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 6.40 Total: -35.50 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -4.87 Total: -89.86 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.32 Total: -0.10 kcal Total: -62.70 2.43 -60.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266173780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.852 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds