Wall clock time and date at job start Fri Apr 10 2020 22:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00020 * 2 1 4 4 H 1.48496 * 109.47074 * 239.99943 * 3 2 1 5 5 H 1.48508 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47215 * 119.99622 * 3 2 1 7 7 C 1.38814 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99750 * 163.54375 * 7 2 1 9 9 N 1.36931 * 119.99744 * 343.55225 * 7 2 1 10 10 C 1.46923 * 120.63294 * 148.97098 * 9 7 2 11 11 C 1.53198 * 108.77807 * 126.36562 * 10 9 7 12 12 C 1.53038 * 109.33347 * 54.62397 * 11 10 9 13 13 C 1.53044 * 109.54141 * 298.68375 * 12 11 10 14 14 H 1.09001 * 109.49659 * 301.35129 * 13 12 11 15 15 C 1.52998 * 109.49929 * 181.28904 * 13 12 11 16 16 N 1.46501 * 109.47256 * 173.06552 * 15 13 12 17 17 C 1.29039 * 119.99853 * 117.70376 * 16 15 13 18 18 O 1.34928 * 119.99745 * 173.36965 * 17 16 15 19 19 C 1.50697 * 120.00440 * 353.37670 * 17 16 15 20 20 H 1.08998 * 109.62657 * 333.35532 * 19 17 16 21 21 C 1.50284 * 109.63731 * 93.95968 * 19 17 16 22 22 C 1.54608 * 112.95574 * 211.78621 * 21 19 17 23 23 C 1.54341 * 111.45358 * 318.99937 * 22 21 19 24 24 O 1.39966 * 112.56987 * 319.31748 * 23 22 21 25 25 C 1.44224 * 112.36983 * 97.12297 * 24 23 22 26 26 C 1.45992 * 112.09985 * 277.40533 * 25 24 23 27 27 C 1.46928 * 120.63192 * 328.95002 * 9 7 2 28 28 H 0.97003 * 119.99952 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.59214 * 246.15454 * 10 9 7 30 30 H 1.09007 * 109.58211 * 6.44380 * 10 9 7 31 31 H 1.08998 * 109.49922 * 174.59018 * 11 10 9 32 32 H 1.08997 * 109.49960 * 294.65861 * 11 10 9 33 33 H 1.09004 * 109.48585 * 178.64477 * 12 11 10 34 34 H 1.09003 * 109.43559 * 58.68805 * 12 11 10 35 35 H 1.08998 * 109.47186 * 53.06447 * 15 13 12 36 36 H 1.08998 * 109.46832 * 293.06411 * 15 13 12 37 37 H 0.96696 * 113.99694 * 180.02562 * 18 17 16 38 38 H 1.09006 * 108.78714 * 332.67921 * 21 19 17 39 39 H 1.09004 * 108.78599 * 90.88747 * 21 19 17 40 40 H 1.08999 * 109.07987 * 198.48993 * 22 21 19 41 41 H 1.09004 * 109.02821 * 79.47491 * 22 21 19 42 42 H 1.08997 * 108.86802 * 198.51808 * 23 22 21 43 43 H 1.09009 * 108.78558 * 80.05291 * 23 22 21 44 44 H 1.08997 * 108.95389 * 156.73281 * 25 24 23 45 45 H 1.08998 * 108.95953 * 38.07944 * 25 24 23 46 46 H 1.09000 * 109.02954 * 299.48446 * 26 25 24 47 47 H 1.09006 * 108.96283 * 180.60656 * 26 25 24 48 48 H 1.09005 * 109.58437 * 113.84326 * 27 9 7 49 49 H 1.09002 * 109.58596 * 353.42074 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0572 -1.2213 -0.2644 9 7 1.3677 -2.3636 0.3368 10 6 1.7756 -3.6439 -0.2574 11 6 2.0582 -4.6427 0.8694 12 6 0.8340 -4.7355 1.7830 13 6 0.5569 -3.3665 2.4084 14 1 1.4309 -3.0406 2.9724 15 6 -0.6475 -3.4678 3.3464 16 7 -0.8113 -2.2041 4.0692 17 6 -1.8859 -1.5068 3.9143 18 8 -2.0972 -0.4144 4.6775 19 6 -2.9052 -1.9126 2.8811 20 1 -2.4145 -2.4660 2.0805 21 6 -3.9594 -2.7710 3.5216 22 6 -4.5453 -3.8273 2.5564 23 6 -4.7703 -3.2406 1.1467 24 8 -5.2853 -1.9396 1.1822 25 6 -4.2576 -0.9383 1.0370 26 6 -3.5844 -0.6548 2.3011 27 6 0.2575 -2.3533 1.2991 28 1 -0.4850 0.8401 -0.0004 29 1 0.9744 -4.0246 -0.8907 30 1 2.6760 -3.4992 -0.8545 31 1 2.2686 -5.6231 0.4421 32 1 2.9187 -4.3054 1.4472 33 1 1.0234 -5.4635 2.5719 34 1 -0.0312 -5.0499 1.1992 35 1 -0.4856 -4.2760 4.0596 36 1 -1.5457 -3.6720 2.7635 37 1 -2.9286 0.0421 4.4894 38 1 -3.5221 -3.2831 4.3788 39 1 -4.7679 -2.1302 3.8735 40 1 -5.4975 -4.1814 2.9513 41 1 -3.8541 -4.6672 2.4868 42 1 -5.4670 -3.8808 0.6056 43 1 -3.8184 -3.2283 0.6156 44 1 -4.7088 -0.0195 0.6624 45 1 -3.5208 -1.2892 0.3145 46 1 -4.3166 -0.2836 3.0182 47 1 -2.8286 0.1130 2.1356 48 1 -0.6676 -2.6287 0.7926 49 1 0.1575 -1.3575 1.7310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330226131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:47 Heat of formation + Delta-G solvation = -59.246701 kcal Electronic energy + Delta-G solvation = -28552.629406 eV Core-core repulsion = 24901.317828 eV Total energy + Delta-G solvation = -3651.311577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.27558 -38.30405 -37.66904 -35.30506 -33.94503 -32.93609 -32.62479 -30.78031 -29.77473 -27.33468 -25.87291 -25.22316 -25.08478 -22.10552 -21.72623 -21.33383 -20.60568 -19.46406 -18.82537 -17.62333 -16.82075 -16.48580 -15.76624 -15.41195 -15.23799 -14.86011 -14.54230 -14.13324 -14.04633 -13.58517 -13.54498 -13.42433 -13.03819 -12.88660 -12.79615 -12.48984 -12.25526 -12.11873 -11.94295 -11.55954 -11.41813 -11.18731 -10.98352 -10.84106 -10.71765 -10.62991 -10.46143 -10.42425 -10.21682 -9.99860 -9.85528 -9.69814 -9.60896 -9.37101 -8.68668 -8.51681 -8.43038 -6.60569 -5.79173 -3.22245 2.69079 3.39390 3.43735 3.47793 3.71590 3.90943 4.36000 4.49951 4.51203 4.83689 4.95886 5.06892 5.13486 5.27799 5.35188 5.40667 5.51620 5.52694 5.58739 5.61199 5.66860 5.70357 5.74574 5.75619 5.84573 5.94895 5.98854 6.02108 6.06006 6.11537 6.13909 6.23265 6.25477 6.34042 6.36366 6.52055 6.59514 6.72469 6.83848 6.92477 7.02259 7.28222 7.40835 7.51647 7.62939 7.81586 8.48406 8.52796 9.23136 9.86212 10.44922 11.29140 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.005877 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.950051 B = 4763.098655 C = 5593.494655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.062 0.938 9 N -0.590 5.590 10 C 0.144 3.856 11 C -0.134 4.134 12 C -0.102 4.102 13 C -0.113 4.113 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.541 5.541 17 C 0.351 3.649 18 O -0.471 6.471 19 C -0.125 4.125 20 H 0.111 0.889 21 C -0.107 4.107 22 C -0.144 4.144 23 C 0.056 3.944 24 O -0.374 6.374 25 C 0.061 3.939 26 C -0.149 4.149 27 C 0.187 3.813 28 H 0.251 0.749 29 H 0.015 0.985 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.399 0.601 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.007 0.993 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.667 -6.668 4.929 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.729 3.271 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.079 0.921 9 N -0.312 5.312 10 C 0.018 3.982 11 C -0.173 4.173 12 C -0.140 4.140 13 C -0.133 4.133 14 H 0.090 0.910 15 C -0.062 4.062 16 N -0.270 5.270 17 C 0.121 3.879 18 O -0.266 6.266 19 C -0.147 4.147 20 H 0.129 0.871 21 C -0.145 4.145 22 C -0.182 4.182 23 C -0.022 4.022 24 O -0.292 6.292 25 C -0.015 4.015 26 C -0.187 4.187 27 C 0.061 3.939 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.025 0.975 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.620 -6.597 5.641 12.957 hybrid contribution -0.363 0.807 -0.727 1.145 sum -9.982 -5.790 4.914 12.543 Atomic orbital electron populations 1.70012 1.05225 1.25238 1.53898 1.25035 0.95304 0.98271 1.00433 0.86420 0.79088 0.83420 0.78142 1.20924 1.21649 1.20975 1.19094 0.92254 0.84817 1.42121 0.92067 1.43972 1.38765 1.02232 1.46280 1.20921 0.97486 0.87016 0.92781 1.21998 0.97756 0.98771 0.98755 1.21396 0.98166 0.96389 0.98036 1.21921 0.97095 0.97097 0.97216 0.90964 1.22188 0.98753 0.89638 0.95611 1.71198 1.18243 1.08024 1.29545 1.22658 0.90304 0.86645 0.88254 1.84621 1.44741 1.39111 1.58126 1.21342 0.95988 0.98427 0.98914 0.87070 1.21305 0.97375 0.97583 0.98257 1.22595 1.01081 0.98240 0.96245 1.22323 0.99354 0.84849 0.95658 1.87727 1.32935 1.14570 1.93961 1.21501 0.90833 0.92543 0.96649 1.21228 1.00193 0.98054 0.99193 1.20687 0.88589 0.97516 0.87093 0.93928 0.96747 0.92960 0.93235 0.92413 0.93591 0.93034 0.90864 0.93836 0.74842 0.92073 0.91279 0.91414 0.91283 0.90564 0.92696 0.89216 0.91443 0.91227 0.89120 0.97526 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 11.39 55.49 0.63 -24.47 16 2 C 0.01 0.23 4.90 -17.43 -0.09 0.15 16 3 Si 0.90 22.00 29.58 -169.99 -5.03 16.97 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -7.04 9.55 -15.06 -0.14 -7.19 16 8 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 9 N -0.59 -14.96 2.98 -172.32 -0.51 -15.47 16 10 C 0.14 3.09 6.52 -3.71 -0.02 3.06 16 11 C -0.13 -2.39 6.08 -26.61 -0.16 -2.55 16 12 C -0.10 -1.74 5.17 -26.69 -0.14 -1.88 16 13 C -0.11 -2.23 2.53 -90.50 -0.23 -2.46 16 14 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 15 C 0.07 1.16 5.44 -4.04 -0.02 1.14 16 16 N -0.54 -10.35 10.22 -58.56 -0.60 -10.95 16 17 C 0.35 5.79 6.80 -13.45 -0.09 5.70 16 18 O -0.47 -7.12 13.54 -16.50 -0.22 -7.34 16 19 C -0.12 -1.72 1.31 -92.46 -0.12 -1.84 16 20 H 0.11 1.80 4.01 -51.93 -0.21 1.60 16 21 C -0.11 -1.23 4.77 -27.24 -0.13 -1.36 16 22 C -0.14 -1.53 6.27 -25.18 -0.16 -1.69 16 23 C 0.06 0.66 6.09 37.86 0.23 0.89 16 24 O -0.37 -4.90 10.35 -32.84 -0.34 -5.24 16 25 C 0.06 0.79 6.11 33.84 0.21 1.00 16 26 C -0.15 -1.86 3.86 -29.39 -0.11 -1.98 16 27 C 0.19 4.42 4.13 -3.71 -0.02 4.40 16 28 H 0.25 6.77 8.31 -40.82 -0.34 6.44 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.70 5.13 -51.93 -0.27 0.43 16 37 H 0.40 3.93 7.13 45.56 0.32 4.25 16 38 H 0.06 0.73 7.72 -51.93 -0.40 0.32 16 39 H 0.07 0.74 7.34 -51.93 -0.38 0.35 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.71 6.54 -51.92 -0.34 0.37 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.07 1.02 7.35 -51.93 -0.38 0.64 16 46 H 0.07 0.69 6.92 -51.93 -0.36 0.33 16 47 H 0.09 1.30 8.00 -51.93 -0.42 0.88 16 48 H 0.01 0.17 7.39 -51.93 -0.38 -0.22 16 49 H 0.08 2.27 6.11 -51.93 -0.32 1.96 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -31.70 366.24 -9.29 -40.99 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.74 Total: 4.59 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.00 Total: -4.61 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.48 Total: -50.89 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.56 Total: -12.57 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.70 -9.29 -40.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330226131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.256 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds