Wall clock time and date at job start Fri Apr 10 2020 22:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00020 * 2 1 4 4 H 1.48496 * 109.47074 * 239.99943 * 3 2 1 5 5 H 1.48508 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47215 * 119.99622 * 3 2 1 7 7 C 1.38814 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99750 * 163.54375 * 7 2 1 9 9 N 1.36931 * 119.99744 * 343.55225 * 7 2 1 10 10 C 1.46923 * 120.63294 * 148.97098 * 9 7 2 11 11 C 1.53198 * 108.77807 * 126.36562 * 10 9 7 12 12 C 1.53038 * 109.33347 * 54.62397 * 11 10 9 13 13 C 1.53044 * 109.54141 * 298.68375 * 12 11 10 14 14 H 1.09001 * 109.49659 * 301.35129 * 13 12 11 15 15 C 1.52998 * 109.49929 * 181.28904 * 13 12 11 16 16 N 1.46501 * 109.47256 * 173.06552 * 15 13 12 17 17 C 1.29039 * 119.99853 * 117.70376 * 16 15 13 18 18 O 1.34928 * 119.99745 * 173.36965 * 17 16 15 19 19 C 1.50697 * 120.00440 * 353.37670 * 17 16 15 20 20 H 1.08998 * 109.62657 * 333.35532 * 19 17 16 21 21 C 1.50284 * 109.63731 * 93.95968 * 19 17 16 22 22 C 1.54608 * 112.95574 * 211.78621 * 21 19 17 23 23 C 1.54341 * 111.45358 * 318.99937 * 22 21 19 24 24 O 1.39966 * 112.56987 * 319.31748 * 23 22 21 25 25 C 1.44224 * 112.36983 * 97.12297 * 24 23 22 26 26 C 1.45992 * 112.09985 * 277.40533 * 25 24 23 27 27 C 1.46928 * 120.63192 * 328.95002 * 9 7 2 28 28 H 0.97003 * 119.99952 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.59214 * 246.15454 * 10 9 7 30 30 H 1.09007 * 109.58211 * 6.44380 * 10 9 7 31 31 H 1.08998 * 109.49922 * 174.59018 * 11 10 9 32 32 H 1.08997 * 109.49960 * 294.65861 * 11 10 9 33 33 H 1.09004 * 109.48585 * 178.64477 * 12 11 10 34 34 H 1.09003 * 109.43559 * 58.68805 * 12 11 10 35 35 H 1.08998 * 109.47186 * 53.06447 * 15 13 12 36 36 H 1.08998 * 109.46832 * 293.06411 * 15 13 12 37 37 H 0.96696 * 113.99694 * 180.02562 * 18 17 16 38 38 H 1.09006 * 108.78714 * 332.67921 * 21 19 17 39 39 H 1.09004 * 108.78599 * 90.88747 * 21 19 17 40 40 H 1.08999 * 109.07987 * 198.48993 * 22 21 19 41 41 H 1.09004 * 109.02821 * 79.47491 * 22 21 19 42 42 H 1.08997 * 108.86802 * 198.51808 * 23 22 21 43 43 H 1.09009 * 108.78558 * 80.05291 * 23 22 21 44 44 H 1.08997 * 108.95389 * 156.73281 * 25 24 23 45 45 H 1.08998 * 108.95953 * 38.07944 * 25 24 23 46 46 H 1.09000 * 109.02954 * 299.48446 * 26 25 24 47 47 H 1.09006 * 108.96283 * 180.60656 * 26 25 24 48 48 H 1.09005 * 109.58437 * 113.84326 * 27 9 7 49 49 H 1.09002 * 109.58596 * 353.42074 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0572 -1.2213 -0.2644 9 7 1.3677 -2.3636 0.3368 10 6 1.7756 -3.6439 -0.2574 11 6 2.0582 -4.6427 0.8694 12 6 0.8340 -4.7355 1.7830 13 6 0.5569 -3.3665 2.4084 14 1 1.4309 -3.0406 2.9724 15 6 -0.6475 -3.4678 3.3464 16 7 -0.8113 -2.2041 4.0692 17 6 -1.8859 -1.5068 3.9143 18 8 -2.0972 -0.4144 4.6775 19 6 -2.9052 -1.9126 2.8811 20 1 -2.4145 -2.4660 2.0805 21 6 -3.9594 -2.7710 3.5216 22 6 -4.5453 -3.8273 2.5564 23 6 -4.7703 -3.2406 1.1467 24 8 -5.2853 -1.9396 1.1822 25 6 -4.2576 -0.9383 1.0370 26 6 -3.5844 -0.6548 2.3011 27 6 0.2575 -2.3533 1.2991 28 1 -0.4850 0.8401 -0.0004 29 1 0.9744 -4.0246 -0.8907 30 1 2.6760 -3.4992 -0.8545 31 1 2.2686 -5.6231 0.4421 32 1 2.9187 -4.3054 1.4472 33 1 1.0234 -5.4635 2.5719 34 1 -0.0312 -5.0499 1.1992 35 1 -0.4856 -4.2760 4.0596 36 1 -1.5457 -3.6720 2.7635 37 1 -2.9286 0.0421 4.4894 38 1 -3.5221 -3.2831 4.3788 39 1 -4.7679 -2.1302 3.8735 40 1 -5.4975 -4.1814 2.9513 41 1 -3.8541 -4.6672 2.4868 42 1 -5.4670 -3.8808 0.6056 43 1 -3.8184 -3.2283 0.6156 44 1 -4.7088 -0.0195 0.6624 45 1 -3.5208 -1.2892 0.3145 46 1 -4.3166 -0.2836 3.0182 47 1 -2.8286 0.1130 2.1356 48 1 -0.6676 -2.6287 0.7926 49 1 0.1575 -1.3575 1.7310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330226131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:46 Heat of formation + Delta-G solvation = -82.924886 kcal Electronic energy + Delta-G solvation = -28553.656169 eV Core-core repulsion = 24901.317828 eV Total energy + Delta-G solvation = -3652.338341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40727 -39.60237 -39.13562 -36.65862 -35.29635 -34.61239 -33.59718 -32.48675 -31.54086 -28.41145 -27.37317 -26.97179 -26.26608 -23.86989 -22.99764 -22.68939 -21.65691 -20.89954 -20.34525 -18.79226 -18.68532 -17.63952 -17.07025 -16.76809 -16.49614 -16.24916 -15.88646 -15.72295 -15.32351 -15.25775 -14.97270 -14.66634 -14.54002 -14.11513 -14.03300 -13.84680 -13.74134 -13.59285 -13.22207 -13.12067 -12.91539 -12.64190 -12.54275 -12.29849 -12.17373 -12.02570 -11.96847 -11.79585 -11.62372 -11.49825 -11.37674 -11.25825 -11.09045 -10.59898 -10.55049 -10.02199 -9.82208 -8.62612 -7.88257 -5.34950 1.39859 1.40805 1.44206 1.49300 2.47718 2.55113 2.90280 3.20955 3.25557 3.44644 3.68192 3.86483 3.99047 4.04475 4.06165 4.15114 4.18197 4.20048 4.28837 4.31689 4.49383 4.58284 4.59000 4.64579 4.70131 4.75223 4.77030 4.83397 4.87610 4.88425 4.98225 5.02629 5.05644 5.08439 5.09363 5.12890 5.20643 5.24006 5.30271 5.37097 5.43054 5.55688 5.68144 5.75136 6.26954 6.35701 6.40659 7.15632 7.31430 7.85987 8.39214 9.16409 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.005877 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.950051 B = 4763.098655 C = 5593.494655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.037 4.037 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.273 4.273 8 H 0.056 0.944 9 N -0.612 5.612 10 C 0.138 3.862 11 C -0.124 4.124 12 C -0.097 4.097 13 C -0.104 4.104 14 H 0.042 0.958 15 C 0.076 3.924 16 N -0.592 5.592 17 C 0.358 3.642 18 O -0.481 6.481 19 C -0.114 4.114 20 H 0.085 0.915 21 C -0.102 4.102 22 C -0.139 4.139 23 C 0.051 3.949 24 O -0.376 6.376 25 C 0.067 3.933 26 C -0.144 4.144 27 C 0.206 3.794 28 H 0.249 0.751 29 H 0.015 0.985 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.419 0.581 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.035 0.965 44 H 0.103 0.897 45 H 0.036 0.964 46 H 0.105 0.895 47 H 0.067 0.933 48 H -0.010 1.010 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.911 -7.901 5.735 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.234 4.234 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.404 4.404 8 H 0.074 0.926 9 N -0.335 5.335 10 C 0.012 3.988 11 C -0.163 4.163 12 C -0.135 4.135 13 C -0.125 4.125 14 H 0.061 0.939 15 C -0.053 4.053 16 N -0.323 5.323 17 C 0.129 3.871 18 O -0.280 6.280 19 C -0.136 4.136 20 H 0.103 0.897 21 C -0.140 4.140 22 C -0.177 4.177 23 C -0.026 4.026 24 O -0.295 6.295 25 C -0.009 4.009 26 C -0.182 4.182 27 C 0.080 3.920 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.276 0.724 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.053 0.947 44 H 0.121 0.879 45 H 0.054 0.946 46 H 0.123 0.877 47 H 0.086 0.914 48 H 0.008 0.992 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.880 -7.841 6.440 14.877 hybrid contribution 0.007 1.227 -1.016 1.593 sum -10.873 -6.614 5.424 13.835 Atomic orbital electron populations 1.70129 1.06046 1.25571 1.54284 1.25701 0.96184 1.00858 1.00677 0.85542 0.77990 0.80114 0.77992 1.19982 1.21382 1.21445 1.19337 0.92378 0.86322 1.42338 0.92643 1.44265 1.39003 1.02982 1.47231 1.21100 0.97157 0.86339 0.94159 1.21899 0.97700 0.99289 0.97448 1.21389 0.98150 0.95161 0.98778 1.21746 0.97099 0.97581 0.96071 0.93906 1.22103 0.97850 0.89831 0.95496 1.71143 1.20031 1.09478 1.31626 1.22958 0.90182 0.86146 0.87818 1.84582 1.46430 1.38837 1.58104 1.21218 0.95901 0.99082 0.97413 0.89744 1.21278 0.96866 0.97698 0.98178 1.22576 1.02133 0.97872 0.95095 1.22448 0.98875 0.84640 0.96660 1.87713 1.32739 1.14995 1.94047 1.21402 0.90357 0.93066 0.96113 1.21195 1.00194 0.96934 0.99886 1.20358 0.87539 0.96546 0.87515 0.94162 0.96722 0.93318 0.89510 0.93424 0.90322 0.92059 0.89011 0.92739 0.72423 0.92078 0.89713 0.89411 0.90829 0.88791 0.94704 0.87862 0.94602 0.87709 0.91390 0.99177 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.91 11.39 21.65 0.25 -52.66 16 2 C -0.04 -2.11 4.90 84.86 0.42 -1.70 16 3 Si 0.96 46.21 29.58 68.60 2.03 48.24 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.27 -15.68 9.55 84.03 0.80 -14.88 16 8 H 0.06 3.16 7.88 -2.91 -0.02 3.14 16 9 N -0.61 -31.87 2.98 -699.09 -2.08 -33.95 16 10 C 0.14 5.90 6.52 86.36 0.56 6.46 16 11 C -0.12 -4.24 6.08 30.67 0.19 -4.05 16 12 C -0.10 -3.13 5.17 30.62 0.16 -2.97 16 13 C -0.10 -4.16 2.53 -10.72 -0.03 -4.19 16 14 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 15 C 0.08 2.60 5.44 86.38 0.47 3.07 16 16 N -0.59 -22.88 10.22 -454.04 -4.64 -27.52 16 17 C 0.36 11.80 6.80 88.52 0.60 12.40 16 18 O -0.48 -14.31 13.54 -81.97 -1.11 -15.42 16 19 C -0.11 -3.11 1.31 -11.99 -0.02 -3.13 16 20 H 0.08 2.81 4.01 -2.39 -0.01 2.80 16 21 C -0.10 -2.13 4.77 30.26 0.14 -1.99 16 22 C -0.14 -2.63 6.27 31.60 0.20 -2.43 16 23 C 0.05 1.14 6.09 72.44 0.44 1.58 16 24 O -0.38 -9.34 10.35 -140.41 -1.45 -10.80 16 25 C 0.07 1.74 6.11 69.83 0.43 2.16 16 26 C -0.14 -3.55 3.86 28.87 0.11 -3.44 16 27 C 0.21 10.08 4.13 86.36 0.36 10.43 16 28 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 2.06 7.93 -2.38 -0.02 2.05 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.05 1.72 5.13 -2.39 -0.01 1.71 16 37 H 0.42 7.70 7.13 -74.06 -0.53 7.17 16 38 H 0.06 1.31 7.72 -2.38 -0.02 1.29 16 39 H 0.08 1.53 7.34 -2.38 -0.02 1.51 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.03 0.91 6.54 -2.38 -0.02 0.90 16 44 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.04 1.15 7.35 -2.39 -0.02 1.13 16 46 H 0.10 1.82 6.92 -2.39 -0.02 1.81 16 47 H 0.07 2.00 8.00 -2.38 -0.02 1.98 16 48 H -0.01 -0.50 7.39 -2.38 -0.02 -0.51 16 49 H 0.04 2.49 6.11 -2.39 -0.01 2.47 16 Total: -1.00 -70.83 366.24 -1.77 -72.60 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.41 Total: 22.16 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 4.83 Total: -2.66 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -6.48 Total: -114.13 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -2.56 Total: -26.21 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -70.83 -1.77 -72.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330226131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.327 kcal (2) G-P(sol) polarization free energy of solvation -70.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds