Wall clock time and date at job start Fri Apr 10 2020 22:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47022 * 299.99581 * 3 2 1 6 6 H 1.48495 * 109.47197 * 59.99594 * 3 2 1 7 7 C 1.37877 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00325 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47449 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47319 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47284 * 180.02562 * 11 10 9 13 13 C 1.46847 * 111.00072 * 45.78781 * 12 11 10 14 14 C 1.53046 * 109.52305 * 185.84090 * 13 12 11 15 15 C 1.53123 * 109.27700 * 300.82248 * 14 13 12 16 16 C 1.53115 * 109.15949 * 57.65561 * 15 14 13 17 17 O 1.42902 * 109.50717 * 62.28713 * 16 15 14 18 18 C 1.50700 * 109.53438 * 182.38039 * 16 15 14 19 19 O 1.21283 * 119.99947 * 21.90841 * 18 16 15 20 20 N 1.34771 * 120.00282 * 201.89728 * 18 16 15 21 21 C 1.47027 * 125.64846 * 4.67575 * 20 18 16 22 22 C 1.54313 * 107.27711 * 180.96568 * 21 20 18 23 23 C 1.55155 * 102.86403 * 22.52366 * 22 21 20 24 24 C 1.47426 * 125.65022 * 184.98043 * 20 18 16 25 25 C 1.46850 * 111.00196 * 170.00143 * 12 11 10 26 26 H 0.97004 * 119.99857 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46862 * 59.99777 * 9 7 2 28 28 H 1.09005 * 109.46912 * 300.00127 * 9 7 2 29 29 H 1.08994 * 109.47059 * 300.00497 * 10 9 7 30 30 H 1.09008 * 109.46544 * 59.99921 * 10 9 7 31 31 H 1.09004 * 109.47570 * 300.00249 * 11 10 9 32 32 H 1.08995 * 109.47422 * 60.00327 * 11 10 9 33 33 H 1.08993 * 109.46162 * 305.85625 * 13 12 11 34 34 H 1.09001 * 109.45737 * 65.82707 * 13 12 11 35 35 H 1.08995 * 109.50325 * 180.88141 * 14 13 12 36 36 H 1.08993 * 109.53198 * 60.78085 * 14 13 12 37 37 H 1.08993 * 109.52370 * 297.75072 * 15 14 13 38 38 H 1.09000 * 109.51803 * 177.55907 * 15 14 13 39 39 H 0.96690 * 113.99888 * 54.95837 * 17 16 15 40 40 H 1.09005 * 109.87944 * 300.50927 * 21 20 18 41 41 H 1.09000 * 109.88279 * 61.67207 * 21 20 18 42 42 H 1.09002 * 110.92158 * 264.11035 * 22 21 20 43 43 H 1.08997 * 110.74368 * 140.85922 * 22 21 20 44 44 H 1.08998 * 111.00546 * 206.22689 * 23 22 21 45 45 H 1.09004 * 111.03645 * 82.39148 * 23 22 21 46 46 H 1.09001 * 110.36396 * 274.67400 * 24 20 18 47 47 H 1.08994 * 110.36915 * 36.89076 * 24 20 18 48 48 H 1.08994 * 109.46094 * 294.17329 * 25 12 11 49 49 H 1.09000 * 109.46291 * 54.14381 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 3.5033 -5.8820 0.9844 14 6 4.5534 -6.9879 0.8563 15 6 3.8886 -8.3464 1.0951 16 6 2.7483 -8.5315 0.0901 17 8 3.2777 -8.5336 -1.2372 18 6 2.0504 -9.8405 0.3553 19 8 2.1335 -10.3617 1.4473 20 7 1.3337 -10.4320 -0.6208 21 6 1.2286 -9.9636 -2.0105 22 6 0.2874 -10.9361 -2.7520 23 6 -0.5381 -11.5648 -1.5985 24 6 0.5201 -11.6522 -0.4705 25 6 1.7505 -7.3809 0.2405 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8719 -3.6043 -0.8894 30 1 2.8719 -3.6043 0.8906 31 1 0.8538 -5.0446 0.8914 32 1 0.8533 -5.0451 -0.8885 33 1 3.9705 -4.9145 0.8007 34 1 3.0813 -5.8965 1.9893 35 1 5.3384 -6.8318 1.5961 36 1 4.9862 -6.9654 -0.1438 37 1 3.4902 -8.3837 2.1089 38 1 4.6237 -9.1401 0.9621 39 1 3.9761 -9.1866 -1.3810 40 1 0.8144 -8.9555 -2.0316 41 1 2.2122 -9.9723 -2.4800 42 1 0.8562 -11.7011 -3.2806 43 1 -0.3618 -10.3954 -3.4406 44 1 -0.9001 -12.5558 -1.8722 45 1 -1.3644 -10.9153 -1.3095 46 1 1.1398 -12.5396 -0.5996 47 1 0.0358 -11.6674 0.5059 48 1 1.3368 -7.3883 1.2488 49 1 0.9447 -7.5020 -0.4835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330561393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:52 Heat of formation + Delta-G solvation = -87.369558 kcal Electronic energy + Delta-G solvation = -26942.446548 eV Core-core repulsion = 23289.915472 eV Total energy + Delta-G solvation = -3652.531076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93583 -38.92290 -37.52203 -36.44258 -34.02766 -32.70930 -31.94724 -31.02731 -30.07607 -29.23041 -26.69677 -25.12552 -24.05860 -23.02078 -22.08420 -21.48935 -20.37613 -19.81031 -19.38746 -17.73527 -16.85498 -16.51391 -16.03382 -15.95239 -15.52089 -14.94699 -14.84156 -14.38713 -14.21410 -14.00334 -13.72085 -13.65385 -13.43877 -13.25953 -12.80511 -12.62904 -12.49487 -12.29834 -12.14827 -11.88627 -11.60035 -11.57214 -11.44660 -11.26213 -11.05238 -10.98078 -10.88877 -10.77394 -10.52675 -10.33783 -10.28205 -9.65063 -9.51729 -9.30605 -9.01076 -8.90387 -8.32804 -8.00994 -5.98035 -3.99955 2.25432 2.66667 3.32449 3.39835 3.44212 3.89332 3.94556 4.18096 4.27649 4.46937 4.49048 4.55532 4.61914 4.73893 4.94920 5.02462 5.10790 5.19456 5.33381 5.37965 5.39200 5.42208 5.48743 5.53631 5.59865 5.62816 5.64701 5.66457 5.77019 5.82157 5.84822 5.87175 6.00755 6.04247 6.17406 6.30962 6.34171 6.71694 6.78228 7.10228 7.15331 7.28129 7.39875 7.41808 7.70219 7.84945 7.87981 8.02401 8.45572 9.07416 9.64023 11.13471 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.002769 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.114756 B =10108.754168 C =10864.620271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.111 4.111 11 C 0.056 3.944 12 N -0.523 5.523 13 C 0.045 3.955 14 C -0.111 4.111 15 C -0.132 4.132 16 C 0.134 3.866 17 O -0.524 6.524 18 C 0.506 3.494 19 O -0.537 6.537 20 N -0.612 5.612 21 C 0.107 3.893 22 C -0.136 4.136 23 C -0.135 4.135 24 C 0.102 3.898 25 C 0.076 3.924 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.370 0.630 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.047 0.953 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 -25.478 -3.806 25.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.070 4.070 12 N -0.247 5.247 13 C -0.083 4.083 14 C -0.149 4.149 15 C -0.170 4.170 16 C 0.090 3.910 17 O -0.328 6.328 18 C 0.294 3.706 19 O -0.414 6.414 20 N -0.347 5.347 21 C -0.016 4.016 22 C -0.174 4.174 23 C -0.173 4.173 24 C -0.021 4.021 25 C -0.053 4.053 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.217 0.783 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.065 0.935 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.179 -25.133 -3.702 25.602 hybrid contribution 0.277 0.450 0.870 1.018 sum 3.456 -24.683 -2.832 25.084 Atomic orbital electron populations 1.69980 1.06056 1.26421 1.51135 1.25031 0.94842 0.99259 0.95415 0.86549 0.80148 0.83849 0.77539 1.19726 1.21023 1.21076 1.21283 0.93063 0.91025 1.50177 0.92638 1.19077 0.94020 0.91358 0.97135 1.21787 0.99333 0.92878 1.00841 1.22309 0.94002 0.90472 1.00250 1.61952 1.12469 1.00920 1.49357 1.22280 0.92945 0.99901 0.93164 1.21553 0.97614 0.92937 1.02820 1.22082 0.96639 0.98698 0.99587 1.21361 0.94066 0.90954 0.84654 1.86768 1.56611 1.62047 1.27360 1.21326 0.79045 0.86837 0.83438 1.90707 1.61808 1.65152 1.23701 1.48559 1.47737 1.27341 1.11020 1.22171 1.00623 0.98244 0.80518 1.22719 0.98151 0.98968 0.97608 1.22794 0.97552 1.01991 0.94937 1.22254 0.92385 0.87565 0.99851 1.21885 0.94556 0.88622 1.00262 0.93109 0.96539 0.96833 0.92389 0.93117 0.95420 0.90953 0.88871 0.95180 0.91298 0.90379 0.90203 0.91433 0.78304 0.90667 0.90135 0.90643 0.89812 0.89828 0.90456 0.91541 0.90571 0.93490 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.29 4.40 -26.74 -0.12 -2.41 16 11 C 0.06 1.00 5.27 -3.83 -0.02 0.98 16 12 N -0.52 -8.01 4.69 -234.67 -1.10 -9.11 16 13 C 0.04 0.64 4.85 -3.83 -0.02 0.62 16 14 C -0.11 -1.29 5.94 -26.64 -0.16 -1.45 16 15 C -0.13 -1.51 4.48 -26.61 -0.12 -1.62 16 16 C 0.13 1.57 0.69 -91.69 -0.06 1.51 16 17 O -0.52 -5.36 9.37 -35.23 -0.33 -5.69 16 18 C 0.51 6.32 6.80 -10.99 -0.07 6.24 16 19 O -0.54 -8.41 16.31 5.55 0.09 -8.32 16 20 N -0.61 -6.16 3.33 -170.52 -0.57 -6.73 16 21 C 0.11 0.86 5.50 -3.07 -0.02 0.84 16 22 C -0.14 -0.80 6.95 -24.90 -0.17 -0.97 16 23 C -0.13 -0.81 7.08 -24.58 -0.17 -0.99 16 24 C 0.10 0.86 6.89 -2.53 -0.02 0.84 16 25 C 0.08 1.03 4.38 -3.83 -0.02 1.01 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.03 6.21 -51.92 -0.32 0.70 16 31 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.43 5.81 -51.93 -0.30 1.13 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.92 7.80 -51.93 -0.40 0.51 16 37 H 0.08 1.02 7.81 -51.93 -0.41 0.61 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.37 2.55 8.93 45.56 0.41 2.95 16 40 H 0.08 0.70 7.12 -51.93 -0.37 0.34 16 41 H 0.08 0.60 6.76 -51.93 -0.35 0.25 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.08 1.09 7.10 -51.93 -0.37 0.72 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -33.10 376.21 -10.04 -43.14 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.99 Total: -0.79 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.52 Total: -8.54 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.93 Total: -42.28 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.24 Total: -14.01 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.10 -10.04 -43.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330561393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.231 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds