Wall clock time and date at job start Fri Apr 10 2020 22:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47022 * 299.99581 * 3 2 1 6 6 H 1.48495 * 109.47197 * 59.99594 * 3 2 1 7 7 C 1.37877 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00325 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47449 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47319 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47284 * 180.02562 * 11 10 9 13 13 C 1.46847 * 111.00072 * 45.78781 * 12 11 10 14 14 C 1.53046 * 109.52305 * 185.84090 * 13 12 11 15 15 C 1.53123 * 109.27700 * 300.82248 * 14 13 12 16 16 C 1.53115 * 109.15949 * 57.65561 * 15 14 13 17 17 O 1.42902 * 109.50717 * 62.28713 * 16 15 14 18 18 C 1.50700 * 109.53438 * 182.38039 * 16 15 14 19 19 O 1.21283 * 119.99947 * 21.90841 * 18 16 15 20 20 N 1.34771 * 120.00282 * 201.89728 * 18 16 15 21 21 C 1.47027 * 125.64846 * 4.67575 * 20 18 16 22 22 C 1.54313 * 107.27711 * 180.96568 * 21 20 18 23 23 C 1.55155 * 102.86403 * 22.52366 * 22 21 20 24 24 C 1.47426 * 125.65022 * 184.98043 * 20 18 16 25 25 C 1.46850 * 111.00196 * 170.00143 * 12 11 10 26 26 H 0.97004 * 119.99857 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46862 * 59.99777 * 9 7 2 28 28 H 1.09005 * 109.46912 * 300.00127 * 9 7 2 29 29 H 1.08994 * 109.47059 * 300.00497 * 10 9 7 30 30 H 1.09008 * 109.46544 * 59.99921 * 10 9 7 31 31 H 1.09004 * 109.47570 * 300.00249 * 11 10 9 32 32 H 1.08995 * 109.47422 * 60.00327 * 11 10 9 33 33 H 1.08993 * 109.46162 * 305.85625 * 13 12 11 34 34 H 1.09001 * 109.45737 * 65.82707 * 13 12 11 35 35 H 1.08995 * 109.50325 * 180.88141 * 14 13 12 36 36 H 1.08993 * 109.53198 * 60.78085 * 14 13 12 37 37 H 1.08993 * 109.52370 * 297.75072 * 15 14 13 38 38 H 1.09000 * 109.51803 * 177.55907 * 15 14 13 39 39 H 0.96690 * 113.99888 * 54.95837 * 17 16 15 40 40 H 1.09005 * 109.87944 * 300.50927 * 21 20 18 41 41 H 1.09000 * 109.88279 * 61.67207 * 21 20 18 42 42 H 1.09002 * 110.92158 * 264.11035 * 22 21 20 43 43 H 1.08997 * 110.74368 * 140.85922 * 22 21 20 44 44 H 1.08998 * 111.00546 * 206.22689 * 23 22 21 45 45 H 1.09004 * 111.03645 * 82.39148 * 23 22 21 46 46 H 1.09001 * 110.36396 * 274.67400 * 24 20 18 47 47 H 1.08994 * 110.36915 * 36.89076 * 24 20 18 48 48 H 1.08994 * 109.46094 * 294.17329 * 25 12 11 49 49 H 1.09000 * 109.46291 * 54.14381 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 3.5033 -5.8820 0.9844 14 6 4.5534 -6.9879 0.8563 15 6 3.8886 -8.3464 1.0951 16 6 2.7483 -8.5315 0.0901 17 8 3.2777 -8.5336 -1.2372 18 6 2.0504 -9.8405 0.3553 19 8 2.1335 -10.3617 1.4473 20 7 1.3337 -10.4320 -0.6208 21 6 1.2286 -9.9636 -2.0105 22 6 0.2874 -10.9361 -2.7520 23 6 -0.5381 -11.5648 -1.5985 24 6 0.5201 -11.6522 -0.4705 25 6 1.7505 -7.3809 0.2405 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8719 -3.6043 -0.8894 30 1 2.8719 -3.6043 0.8906 31 1 0.8538 -5.0446 0.8914 32 1 0.8533 -5.0451 -0.8885 33 1 3.9705 -4.9145 0.8007 34 1 3.0813 -5.8965 1.9893 35 1 5.3384 -6.8318 1.5961 36 1 4.9862 -6.9654 -0.1438 37 1 3.4902 -8.3837 2.1089 38 1 4.6237 -9.1401 0.9621 39 1 3.9761 -9.1866 -1.3810 40 1 0.8144 -8.9555 -2.0316 41 1 2.2122 -9.9723 -2.4800 42 1 0.8562 -11.7011 -3.2806 43 1 -0.3618 -10.3954 -3.4406 44 1 -0.9001 -12.5558 -1.8722 45 1 -1.3644 -10.9153 -1.3095 46 1 1.1398 -12.5396 -0.5996 47 1 0.0358 -11.6674 0.5059 48 1 1.3368 -7.3883 1.2488 49 1 0.9447 -7.5020 -0.4835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330561393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:52 Heat of formation + Delta-G solvation = -110.686605 kcal Electronic energy + Delta-G solvation = -26943.457651 eV Core-core repulsion = 23289.915472 eV Total energy + Delta-G solvation = -3653.542179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.87154 -39.90924 -38.41107 -37.54492 -35.75319 -34.24376 -32.85558 -32.44330 -31.20047 -29.88914 -28.45743 -26.19115 -25.49712 -23.96117 -23.57913 -22.14667 -21.71052 -20.82017 -20.56699 -18.61934 -18.47193 -17.59765 -17.23791 -16.96390 -16.53280 -16.45450 -16.26610 -15.91311 -15.11698 -15.00416 -14.96415 -14.52513 -14.35072 -14.23945 -14.04702 -13.85101 -13.64849 -13.42850 -13.28602 -13.16283 -13.15538 -12.73706 -12.69826 -12.44592 -12.28046 -12.15622 -11.91589 -11.90134 -11.80981 -11.58147 -11.52890 -11.35309 -11.23046 -11.04756 -10.55138 -10.45156 -9.72104 -9.29725 -8.19788 -6.30616 1.28563 1.40559 1.40756 1.54367 1.85578 2.41305 2.84779 3.00927 3.13580 3.32744 3.61989 3.70538 3.72271 3.82987 4.05365 4.07841 4.09815 4.21983 4.27011 4.32867 4.41135 4.49635 4.51079 4.59438 4.67851 4.69635 4.74207 4.78399 4.94350 4.94603 4.96302 4.99024 5.01088 5.04988 5.11759 5.12954 5.26518 5.26893 5.36522 5.39559 5.51952 5.73755 5.85503 6.01324 6.10674 6.26775 6.34369 6.63430 6.86380 6.97825 7.38654 8.92469 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.002769 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.114756 B =10108.754168 C =10864.620271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.066 3.934 12 N -0.521 5.521 13 C 0.040 3.960 14 C -0.101 4.101 15 C -0.128 4.128 16 C 0.146 3.854 17 O -0.526 6.526 18 C 0.503 3.497 19 O -0.576 6.576 20 N -0.609 5.609 21 C 0.102 3.898 22 C -0.129 4.129 23 C -0.127 4.127 24 C 0.094 3.906 25 C 0.076 3.924 26 H 0.263 0.737 27 H -0.007 1.007 28 H -0.012 1.012 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.023 0.977 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.388 0.612 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.036 0.964 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.913 -26.391 -5.008 27.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.061 4.061 12 N -0.245 5.245 13 C -0.088 4.088 14 C -0.139 4.139 15 C -0.167 4.167 16 C 0.101 3.899 17 O -0.332 6.332 18 C 0.291 3.709 19 O -0.456 6.456 20 N -0.342 5.342 21 C -0.019 4.019 22 C -0.167 4.167 23 C -0.165 4.165 24 C -0.028 4.028 25 C -0.053 4.053 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.006 0.994 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.041 0.959 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.237 0.763 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.125 0.875 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.641 -26.077 -4.942 26.943 hybrid contribution -0.226 0.685 1.211 1.410 sum 4.415 -25.391 -3.730 26.041 Atomic orbital electron populations 1.70109 1.07825 1.27682 1.51870 1.25996 0.95778 1.03412 0.94772 0.85392 0.79131 0.78722 0.77770 1.18496 1.20309 1.20436 1.21710 0.93556 0.92281 1.50243 0.92135 1.18974 0.94399 0.93118 0.94702 1.21519 0.98095 0.92460 1.00975 1.22061 0.93988 0.90169 0.99887 1.61946 1.12024 1.00650 1.49859 1.22363 0.93236 1.00699 0.92500 1.21495 0.96957 0.91747 1.03669 1.22051 0.96850 0.99170 0.98602 1.21063 0.93645 0.89665 0.85484 1.86737 1.57392 1.62886 1.26202 1.21400 0.79251 0.87011 0.83279 1.90686 1.63433 1.66236 1.25222 1.48684 1.46598 1.27477 1.11432 1.22320 1.01800 0.98188 0.79622 1.22730 0.97813 0.98805 0.97344 1.22788 0.96565 1.03227 0.93905 1.22440 0.93013 0.87247 1.00107 1.21878 0.95257 0.88529 0.99646 0.92796 0.98905 0.99356 0.92469 0.92579 0.96121 0.91149 0.89889 0.95853 0.89500 0.89920 0.91767 0.89585 0.76270 0.92098 0.89130 0.88974 0.88854 0.87529 0.91101 0.90506 0.92216 0.94622 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.09 -3.90 4.40 30.59 0.13 -3.77 16 11 C 0.07 2.40 5.27 86.30 0.46 2.85 16 12 N -0.52 -15.83 4.69 -896.37 -4.20 -20.03 16 13 C 0.04 1.11 4.85 86.33 0.42 1.53 16 14 C -0.10 -2.17 5.94 30.65 0.18 -1.99 16 15 C -0.13 -2.77 4.48 30.67 0.14 -2.64 16 16 C 0.15 3.29 0.69 -11.49 -0.01 3.28 16 17 O -0.53 -9.74 9.37 -148.98 -1.40 -11.13 16 18 C 0.50 12.33 6.80 87.66 0.60 12.93 16 19 O -0.58 -18.15 16.31 -3.04 -0.05 -18.20 16 20 N -0.61 -11.69 3.33 -811.80 -2.70 -14.39 16 21 C 0.10 1.48 5.50 86.72 0.48 1.96 16 22 C -0.13 -1.17 6.95 31.78 0.22 -0.95 16 23 C -0.13 -1.28 7.08 31.99 0.23 -1.05 16 24 C 0.09 1.48 6.89 86.85 0.60 2.08 16 25 C 0.08 2.06 4.38 86.33 0.38 2.44 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 28 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 2.29 6.21 -2.38 -0.01 2.27 16 31 H 0.02 0.77 8.08 -2.38 -0.02 0.75 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.08 2.50 5.81 -2.39 -0.01 2.48 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.74 7.80 -2.39 -0.02 1.72 16 37 H 0.06 1.61 7.81 -2.39 -0.02 1.60 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.39 4.29 8.93 -74.06 -0.66 3.63 16 40 H 0.06 1.08 7.12 -2.38 -0.02 1.06 16 41 H 0.09 1.14 6.76 -2.39 -0.02 1.12 16 42 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 48 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.08 2.19 7.10 -2.39 -0.02 2.18 16 Total: -1.00 -72.13 376.21 -1.12 -73.24 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.26 Total: 13.50 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 4.66 Total: -12.40 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -6.62 Total: -91.73 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.45 Total: -29.33 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -72.13 -1.12 -73.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330561393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.443 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds