Wall clock time and date at job start Fri Apr 10 2020 22:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99592 * 2 1 4 4 H 1.48496 * 109.46867 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46918 * 299.99450 * 3 2 1 6 6 H 1.48492 * 109.47405 * 59.99440 * 3 2 1 7 7 C 1.37870 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47522 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47493 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47369 * 179.97438 * 11 10 9 13 13 C 1.46851 * 111.00148 * 294.21046 * 12 11 10 14 14 C 1.53045 * 109.52128 * 174.15903 * 13 12 11 15 15 C 1.53116 * 109.27996 * 59.18217 * 14 13 12 16 16 C 1.53121 * 109.15971 * 302.34478 * 15 14 13 17 17 O 1.42903 * 109.50252 * 297.71414 * 16 15 14 18 18 C 1.50695 * 109.50314 * 177.59509 * 16 15 14 19 19 O 1.21279 * 120.00177 * 337.89163 * 18 16 15 20 20 N 1.34784 * 120.00112 * 157.89626 * 18 16 15 21 21 C 1.47028 * 125.64525 * 4.80337 * 20 18 16 22 22 C 1.54313 * 107.27549 * 180.96855 * 21 20 18 23 23 C 1.55162 * 102.86159 * 22.52964 * 22 21 20 24 24 C 1.47415 * 125.65021 * 185.11706 * 20 18 16 25 25 C 1.46845 * 111.00095 * 169.99822 * 12 11 10 26 26 H 0.96995 * 120.00075 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47198 * 60.00174 * 9 7 2 28 28 H 1.08996 * 109.47292 * 300.00323 * 9 7 2 29 29 H 1.08997 * 109.47293 * 60.00120 * 10 9 7 30 30 H 1.09000 * 109.46867 * 299.99968 * 10 9 7 31 31 H 1.08996 * 109.47171 * 300.00189 * 11 10 9 32 32 H 1.09007 * 109.46890 * 59.99789 * 11 10 9 33 33 H 1.09000 * 109.46305 * 294.17417 * 13 12 11 34 34 H 1.08993 * 109.45983 * 54.14533 * 13 12 11 35 35 H 1.08994 * 109.50140 * 299.23643 * 14 13 12 36 36 H 1.08996 * 109.52839 * 179.14109 * 14 13 12 37 37 H 1.08996 * 109.52670 * 182.43812 * 15 14 13 38 38 H 1.09007 * 109.52349 * 62.24176 * 15 14 13 39 39 H 0.96700 * 113.99594 * 304.93721 * 17 16 15 40 40 H 1.08999 * 109.88103 * 300.51521 * 21 20 18 41 41 H 1.08999 * 109.87753 * 61.68184 * 21 20 18 42 42 H 1.08994 * 110.92726 * 264.11736 * 22 21 20 43 43 H 1.09001 * 110.58926 * 140.78481 * 22 21 20 44 44 H 1.09000 * 111.00228 * 206.23124 * 23 22 21 45 45 H 1.09001 * 111.03997 * 82.38896 * 23 22 21 46 46 H 1.09005 * 110.36758 * 274.66745 * 24 20 18 47 47 H 1.08994 * 110.37061 * 36.99156 * 24 20 18 48 48 H 1.08993 * 109.46529 * 305.85558 * 25 12 11 49 49 H 1.09007 * 109.46286 * 65.82932 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4806 -4.9871 0.0012 12 7 2.4352 -6.1035 0.0018 13 6 3.2054 -6.1381 -1.2480 14 6 4.2853 -7.2184 -1.1535 15 6 3.6222 -8.5756 -0.9032 16 6 2.7873 -8.4984 0.3781 17 8 3.6426 -8.2204 1.4887 18 6 2.0838 -9.8124 0.6002 19 8 1.8936 -10.5637 -0.3326 20 7 1.6660 -10.1527 1.8356 21 6 1.7410 -9.2997 3.0308 22 6 1.1709 -10.1137 4.2113 23 6 1.3379 -11.5801 3.7323 24 6 1.0640 -11.4442 2.2136 25 6 1.7509 -7.3809 0.2393 26 1 -0.4850 0.8400 -0.0004 27 1 0.6249 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8902 29 1 2.8714 -3.6039 0.8922 30 1 2.8728 -3.6046 -0.8877 31 1 0.8529 -5.0447 0.8904 32 1 0.8549 -5.0450 -0.8895 33 1 2.5380 -6.3635 -2.0798 34 1 3.6752 -5.1684 -1.4120 35 1 4.9612 -6.9863 -0.3305 36 1 4.8472 -7.2546 -2.0868 37 1 4.3899 -9.3413 -0.7920 38 1 2.9758 -8.8259 -1.7445 39 1 4.3727 -8.8465 1.5892 40 1 2.7784 -9.0310 3.2300 41 1 1.1447 -8.3995 2.8816 42 1 0.1192 -9.8787 4.3744 43 1 1.7520 -9.9351 5.1161 44 1 0.6030 -12.2316 4.2051 45 1 2.3506 -11.9389 3.9160 46 1 -0.0089 -11.4335 2.0212 47 1 1.5400 -12.2588 1.6679 48 1 1.1643 -7.3138 1.1555 49 1 1.0903 -7.6005 -0.5995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330561394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:55 Heat of formation + Delta-G solvation = -89.726302 kcal Electronic energy + Delta-G solvation = -26921.814696 eV Core-core repulsion = 23269.181424 eV Total energy + Delta-G solvation = -3652.633272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93278 -38.89749 -37.51061 -36.38361 -34.04890 -32.71069 -31.95777 -30.97943 -30.14945 -29.20655 -26.71362 -25.06597 -24.06542 -22.96272 -22.09134 -21.48822 -20.24018 -19.84630 -19.54042 -17.75396 -16.82186 -16.46574 -16.13576 -15.93353 -15.37942 -15.19017 -14.82546 -14.39915 -14.14991 -13.84784 -13.72342 -13.59064 -13.43407 -13.33621 -12.85026 -12.68251 -12.49682 -12.32695 -12.14170 -11.76448 -11.63547 -11.56496 -11.47626 -11.27551 -10.99708 -10.94776 -10.89939 -10.74137 -10.54358 -10.44282 -10.29833 -9.62929 -9.50943 -9.28411 -9.00882 -8.86914 -8.31549 -8.03018 -5.96806 -3.98533 2.25706 2.66518 3.33272 3.40617 3.45241 3.89484 3.92206 4.18666 4.28147 4.46007 4.49942 4.54482 4.60661 4.73327 4.96845 5.03034 5.08565 5.17276 5.32058 5.37637 5.39160 5.40957 5.49825 5.51347 5.58075 5.62582 5.63350 5.66862 5.77298 5.80486 5.84340 5.86022 6.04191 6.05481 6.14457 6.31996 6.34595 6.74478 6.79795 7.15162 7.15975 7.29064 7.40959 7.41487 7.72519 7.87393 7.87983 8.04133 8.47626 9.09035 9.65395 11.14746 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020198 B = 0.002790 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.974755 B =10035.179446 C =10806.589756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.057 3.943 12 N -0.522 5.522 13 C 0.049 3.951 14 C -0.111 4.111 15 C -0.131 4.131 16 C 0.134 3.866 17 O -0.522 6.522 18 C 0.507 3.493 19 O -0.538 6.538 20 N -0.611 5.611 21 C 0.100 3.900 22 C -0.136 4.136 23 C -0.133 4.133 24 C 0.101 3.899 25 C 0.074 3.926 26 H 0.259 0.741 27 H 0.013 0.987 28 H 0.015 0.985 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.029 0.971 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.371 0.629 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 -24.728 6.002 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.070 4.070 12 N -0.246 5.246 13 C -0.079 4.079 14 C -0.149 4.149 15 C -0.169 4.169 16 C 0.089 3.911 17 O -0.326 6.326 18 C 0.294 3.706 19 O -0.414 6.414 20 N -0.346 5.346 21 C -0.022 4.022 22 C -0.174 4.174 23 C -0.171 4.171 24 C -0.021 4.021 25 C -0.055 4.055 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.217 0.783 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.958 -24.402 5.884 25.586 hybrid contribution 0.031 0.299 -0.699 0.761 sum 4.989 -24.103 5.185 25.154 Atomic orbital electron populations 1.69978 1.06056 1.26402 1.51234 1.25031 0.94838 0.99253 0.95452 0.86549 0.80166 0.83858 0.77520 1.19715 1.21090 1.21044 1.21290 0.93092 0.91018 1.50037 0.92613 1.19080 0.94056 0.91444 0.97054 1.21642 0.99102 0.92452 1.00866 1.22309 0.93628 0.90908 1.00178 1.61909 1.26279 1.01646 1.34813 1.22198 0.95548 1.00140 0.90017 1.21538 0.98104 0.93012 1.02235 1.22074 0.99387 0.98557 0.96915 1.21357 0.91112 0.90543 0.88062 1.86756 1.42403 1.55964 1.47509 1.21319 0.79107 0.89000 0.81208 1.90704 1.56848 1.53087 1.40800 1.48549 1.60833 1.16571 1.08627 1.22273 1.03084 0.93391 0.83496 1.22708 1.02108 0.94604 0.97941 1.22785 1.02712 0.97181 0.94444 1.22257 0.98415 0.86269 0.95159 1.21912 0.93226 0.88860 1.01493 0.93131 0.96874 0.96628 0.92447 0.93435 0.91212 0.95374 0.95242 0.89394 0.90303 0.91296 0.91406 0.90208 0.78286 0.89191 0.91113 0.90572 0.89808 0.89851 0.90601 0.91463 0.90629 0.89985 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.42 16 10 C -0.10 -2.15 5.08 -26.73 -0.14 -2.29 16 11 C 0.06 1.00 4.96 -3.83 -0.02 0.98 16 12 N -0.52 -7.98 4.54 -234.67 -1.07 -9.04 16 13 C 0.05 0.68 5.29 -3.83 -0.02 0.66 16 14 C -0.11 -1.27 5.94 -26.65 -0.16 -1.42 16 15 C -0.13 -1.47 4.49 -26.61 -0.12 -1.59 16 16 C 0.13 1.56 0.62 -91.69 -0.06 1.50 16 17 O -0.52 -5.40 9.39 -35.23 -0.33 -5.73 16 18 C 0.51 6.31 6.77 -10.98 -0.07 6.23 16 19 O -0.54 -8.37 16.31 5.56 0.09 -8.28 16 20 N -0.61 -6.19 3.32 -170.53 -0.57 -6.76 16 21 C 0.10 0.84 5.84 -3.07 -0.02 0.82 16 22 C -0.14 -0.82 6.95 -24.90 -0.17 -0.99 16 23 C -0.13 -0.75 7.08 -24.58 -0.17 -0.93 16 24 C 0.10 0.85 6.89 -2.53 -0.02 0.83 16 25 C 0.07 1.00 4.40 -3.83 -0.02 0.99 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.98 6.43 -51.93 -0.33 0.64 16 31 H 0.07 1.23 7.99 -51.93 -0.41 0.81 16 32 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 1.32 6.21 -51.93 -0.32 0.99 16 35 H 0.08 0.92 7.80 -51.93 -0.40 0.52 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.00 7.81 -51.93 -0.41 0.59 16 39 H 0.37 2.59 9.03 45.56 0.41 3.00 16 40 H 0.09 0.74 6.34 -51.93 -0.33 0.41 16 41 H 0.07 0.67 6.82 -51.93 -0.35 0.32 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 48 H 0.08 1.10 6.59 -51.93 -0.34 0.76 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -33.21 376.54 -9.97 -43.18 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.95 Total: -0.99 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.53 Total: -8.39 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.90 Total: -42.30 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.24 Total: -14.01 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.21 -9.97 -43.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330561394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.544 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds