Wall clock time and date at job start Fri Apr 10 2020 22:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99592 * 2 1 4 4 H 1.48496 * 109.46867 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46918 * 299.99450 * 3 2 1 6 6 H 1.48492 * 109.47405 * 59.99440 * 3 2 1 7 7 C 1.37870 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47522 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47493 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47369 * 179.97438 * 11 10 9 13 13 C 1.46851 * 111.00148 * 294.21046 * 12 11 10 14 14 C 1.53045 * 109.52128 * 174.15903 * 13 12 11 15 15 C 1.53116 * 109.27996 * 59.18217 * 14 13 12 16 16 C 1.53121 * 109.15971 * 302.34478 * 15 14 13 17 17 O 1.42903 * 109.50252 * 297.71414 * 16 15 14 18 18 C 1.50695 * 109.50314 * 177.59509 * 16 15 14 19 19 O 1.21279 * 120.00177 * 337.89163 * 18 16 15 20 20 N 1.34784 * 120.00112 * 157.89626 * 18 16 15 21 21 C 1.47028 * 125.64525 * 4.80337 * 20 18 16 22 22 C 1.54313 * 107.27549 * 180.96855 * 21 20 18 23 23 C 1.55162 * 102.86159 * 22.52964 * 22 21 20 24 24 C 1.47415 * 125.65021 * 185.11706 * 20 18 16 25 25 C 1.46845 * 111.00095 * 169.99822 * 12 11 10 26 26 H 0.96995 * 120.00075 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47198 * 60.00174 * 9 7 2 28 28 H 1.08996 * 109.47292 * 300.00323 * 9 7 2 29 29 H 1.08997 * 109.47293 * 60.00120 * 10 9 7 30 30 H 1.09000 * 109.46867 * 299.99968 * 10 9 7 31 31 H 1.08996 * 109.47171 * 300.00189 * 11 10 9 32 32 H 1.09007 * 109.46890 * 59.99789 * 11 10 9 33 33 H 1.09000 * 109.46305 * 294.17417 * 13 12 11 34 34 H 1.08993 * 109.45983 * 54.14533 * 13 12 11 35 35 H 1.08994 * 109.50140 * 299.23643 * 14 13 12 36 36 H 1.08996 * 109.52839 * 179.14109 * 14 13 12 37 37 H 1.08996 * 109.52670 * 182.43812 * 15 14 13 38 38 H 1.09007 * 109.52349 * 62.24176 * 15 14 13 39 39 H 0.96700 * 113.99594 * 304.93721 * 17 16 15 40 40 H 1.08999 * 109.88103 * 300.51521 * 21 20 18 41 41 H 1.08999 * 109.87753 * 61.68184 * 21 20 18 42 42 H 1.08994 * 110.92726 * 264.11736 * 22 21 20 43 43 H 1.09001 * 110.58926 * 140.78481 * 22 21 20 44 44 H 1.09000 * 111.00228 * 206.23124 * 23 22 21 45 45 H 1.09001 * 111.03997 * 82.38896 * 23 22 21 46 46 H 1.09005 * 110.36758 * 274.66745 * 24 20 18 47 47 H 1.08994 * 110.37061 * 36.99156 * 24 20 18 48 48 H 1.08993 * 109.46529 * 305.85558 * 25 12 11 49 49 H 1.09007 * 109.46286 * 65.82932 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4806 -4.9871 0.0012 12 7 2.4352 -6.1035 0.0018 13 6 3.2054 -6.1381 -1.2480 14 6 4.2853 -7.2184 -1.1535 15 6 3.6222 -8.5756 -0.9032 16 6 2.7873 -8.4984 0.3781 17 8 3.6426 -8.2204 1.4887 18 6 2.0838 -9.8124 0.6002 19 8 1.8936 -10.5637 -0.3326 20 7 1.6660 -10.1527 1.8356 21 6 1.7410 -9.2997 3.0308 22 6 1.1709 -10.1137 4.2113 23 6 1.3379 -11.5801 3.7323 24 6 1.0640 -11.4442 2.2136 25 6 1.7509 -7.3809 0.2393 26 1 -0.4850 0.8400 -0.0004 27 1 0.6249 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8902 29 1 2.8714 -3.6039 0.8922 30 1 2.8728 -3.6046 -0.8877 31 1 0.8529 -5.0447 0.8904 32 1 0.8549 -5.0450 -0.8895 33 1 2.5380 -6.3635 -2.0798 34 1 3.6752 -5.1684 -1.4120 35 1 4.9612 -6.9863 -0.3305 36 1 4.8472 -7.2546 -2.0868 37 1 4.3899 -9.3413 -0.7920 38 1 2.9758 -8.8259 -1.7445 39 1 4.3727 -8.8465 1.5892 40 1 2.7784 -9.0310 3.2300 41 1 1.1447 -8.3995 2.8816 42 1 0.1192 -9.8787 4.3744 43 1 1.7520 -9.9351 5.1161 44 1 0.6030 -12.2316 4.2051 45 1 2.3506 -11.9389 3.9160 46 1 -0.0089 -11.4335 2.0212 47 1 1.5400 -12.2588 1.6679 48 1 1.1643 -7.3138 1.1555 49 1 1.0903 -7.6005 -0.5995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330561394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:54 Heat of formation + Delta-G solvation = -112.991217 kcal Electronic energy + Delta-G solvation = -26922.823538 eV Core-core repulsion = 23269.181424 eV Total energy + Delta-G solvation = -3653.642114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86529 -39.86642 -38.40046 -37.48777 -35.78047 -34.25160 -32.84818 -32.43852 -31.22454 -29.87426 -28.48662 -26.07443 -25.53927 -23.89601 -23.56310 -22.12344 -21.70833 -20.91820 -20.58257 -18.62734 -18.46336 -17.54902 -17.21236 -16.99951 -16.60385 -16.32193 -16.24677 -16.06177 -15.18530 -14.96042 -14.75244 -14.49164 -14.37204 -14.24814 -14.10997 -13.86298 -13.62593 -13.53430 -13.30437 -13.20277 -13.08106 -12.68598 -12.56970 -12.40406 -12.25253 -12.13686 -12.08145 -11.93328 -11.82163 -11.54786 -11.51859 -11.33943 -11.26737 -11.02382 -10.54479 -10.46944 -9.70215 -9.30384 -8.19093 -6.29833 1.28835 1.40976 1.41199 1.54952 1.85099 2.41930 2.83292 3.01270 3.14192 3.33421 3.61671 3.70434 3.71438 3.83304 4.05463 4.05947 4.09456 4.23816 4.26559 4.32723 4.43291 4.49120 4.53311 4.59452 4.69878 4.71825 4.73148 4.80247 4.93281 4.95303 4.96587 4.99520 5.01791 5.05529 5.10491 5.13169 5.24972 5.28428 5.36958 5.40718 5.53862 5.75697 5.87278 6.02369 6.11948 6.28286 6.34133 6.63441 6.87235 6.97701 7.39412 8.93157 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020198 B = 0.002790 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.974755 B =10035.179446 C =10806.589756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.085 4.085 11 C 0.067 3.933 12 N -0.522 5.522 13 C 0.043 3.957 14 C -0.101 4.101 15 C -0.127 4.127 16 C 0.145 3.855 17 O -0.525 6.525 18 C 0.504 3.496 19 O -0.575 6.575 20 N -0.608 5.608 21 C 0.096 3.904 22 C -0.130 4.130 23 C -0.121 4.121 24 C 0.092 3.908 25 C 0.074 3.926 26 H 0.263 0.737 27 H -0.012 1.012 28 H -0.008 1.008 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.388 0.612 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 -25.367 7.164 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.123 4.123 11 C -0.061 4.061 12 N -0.246 5.246 13 C -0.084 4.084 14 C -0.138 4.138 15 C -0.166 4.166 16 C 0.101 3.899 17 O -0.332 6.332 18 C 0.291 3.709 19 O -0.455 6.455 20 N -0.341 5.341 21 C -0.026 4.026 22 C -0.168 4.168 23 C -0.158 4.158 24 C -0.030 4.030 25 C -0.055 4.055 26 H 0.072 0.928 27 H 0.007 0.993 28 H 0.010 0.990 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.237 0.763 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.692 -25.064 7.083 26.892 hybrid contribution -0.548 0.465 -1.025 1.252 sum 6.144 -24.600 6.058 26.069 Atomic orbital electron populations 1.70108 1.07816 1.27674 1.51930 1.25993 0.95777 1.03400 0.94784 0.85390 0.79121 0.78722 0.77776 1.18527 1.20409 1.20310 1.21710 0.93542 0.92311 1.50174 0.92203 1.18974 0.94410 0.93143 0.94670 1.21359 0.97875 0.92233 1.00818 1.22044 0.93553 0.90576 0.99896 1.61868 1.25564 1.01582 1.35606 1.22297 0.96070 1.00760 0.89305 1.21481 0.97122 0.91865 1.03364 1.22042 0.99491 0.98928 0.96108 1.21080 0.90839 0.89241 0.88786 1.86723 1.42946 1.56700 1.46807 1.21402 0.79101 0.88901 0.81500 1.90683 1.58557 1.54228 1.42069 1.48670 1.59522 1.17451 1.08456 1.22403 1.03384 0.93133 0.83678 1.22719 1.02425 0.94240 0.97407 1.22765 1.03805 0.97280 0.91986 1.22448 0.98066 0.85207 0.97254 1.21908 0.93851 0.88632 1.01091 0.92804 0.99315 0.98962 0.92738 0.93021 0.91334 0.95992 0.95583 0.90392 0.90045 0.89390 0.89605 0.91629 0.76287 0.88647 0.92498 0.90345 0.88049 0.87927 0.89798 0.91722 0.91382 0.90033 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.27 9.11 25.60 0.23 -31.03 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.08 -3.61 5.08 30.59 0.16 -3.45 16 11 C 0.07 2.41 4.96 86.31 0.43 2.84 16 12 N -0.52 -15.82 4.54 -896.35 -4.07 -19.89 16 13 C 0.04 1.19 5.29 86.33 0.46 1.65 16 14 C -0.10 -2.13 5.94 30.65 0.18 -1.94 16 15 C -0.13 -2.70 4.49 30.67 0.14 -2.57 16 16 C 0.15 3.26 0.62 -11.49 -0.01 3.25 16 17 O -0.53 -9.92 9.39 -148.98 -1.40 -11.32 16 18 C 0.50 12.32 6.77 87.65 0.59 12.91 16 19 O -0.58 -18.00 16.31 -3.03 -0.05 -18.05 16 20 N -0.61 -11.79 3.32 -811.82 -2.70 -14.49 16 21 C 0.10 1.47 5.84 86.72 0.51 1.97 16 22 C -0.13 -1.26 6.95 31.78 0.22 -1.04 16 23 C -0.12 -1.06 7.08 31.99 0.23 -0.83 16 24 C 0.09 1.45 6.89 86.86 0.60 2.05 16 25 C 0.07 2.00 4.40 86.33 0.38 2.38 16 26 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 27 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 28 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.32 16 30 H 0.05 2.14 6.43 -2.39 -0.02 2.12 16 31 H 0.07 2.46 7.99 -2.39 -0.02 2.45 16 32 H 0.02 0.81 8.12 -2.38 -0.02 0.79 16 33 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 2.30 6.21 -2.39 -0.01 2.28 16 35 H 0.08 1.71 7.80 -2.39 -0.02 1.70 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.61 7.81 -2.38 -0.02 1.59 16 39 H 0.39 4.45 9.03 -74.06 -0.67 3.78 16 40 H 0.10 1.37 6.34 -2.39 -0.02 1.36 16 41 H 0.06 1.05 6.82 -2.39 -0.02 1.03 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 48 H 0.08 2.19 6.59 -2.39 -0.02 2.17 16 49 H 0.04 1.07 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -72.15 376.54 -0.93 -73.07 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.25 Total: 13.19 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.72 Total: -11.95 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -6.48 Total: -91.75 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -1.45 Total: -29.37 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -72.15 -0.93 -73.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330561394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.916 kcal (2) G-P(sol) polarization free energy of solvation -72.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds