Wall clock time and date at job start Fri Apr 10 2020 22:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99597 * 2 1 4 4 H 1.48501 * 109.46832 * 269.99947 * 3 2 1 5 5 H 1.48496 * 109.47220 * 29.99851 * 3 2 1 6 6 H 1.48495 * 109.47136 * 149.99831 * 3 2 1 7 7 C 1.37875 * 120.00554 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99729 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47084 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.34778 * 120.00074 * 179.97438 * 11 10 9 13 13 O 1.21273 * 119.99953 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00074 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.46943 * 185.06728 * 14 12 11 16 16 N 1.46903 * 110.01812 * 54.63307 * 15 14 12 17 17 C 1.47010 * 111.00397 * 58.60387 * 16 15 14 18 18 C 1.53090 * 109.29488 * 182.37147 * 17 16 15 19 19 O 1.43022 * 109.25954 * 303.22156 * 18 17 16 20 20 C 1.43023 * 113.77297 * 58.59830 * 19 18 17 21 21 C 1.47008 * 111.00056 * 182.24361 * 16 15 14 22 22 C 1.54270 * 110.06976 * 176.04340 * 15 14 12 23 23 C 1.54891 * 104.19205 * 95.69771 * 22 15 14 24 24 C 1.54892 * 102.75144 * 37.94159 * 23 22 15 25 25 C 1.53865 * 110.03299 * 293.23627 * 15 14 12 26 26 H 0.97001 * 120.00618 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47059 * 59.99679 * 9 7 2 28 28 H 1.08997 * 109.46924 * 300.00132 * 9 7 2 29 29 H 1.08993 * 109.47015 * 59.99747 * 10 9 7 30 30 H 1.09003 * 109.46879 * 299.99606 * 10 9 7 31 31 H 0.97009 * 120.00060 * 0.02562 * 11 10 9 32 32 H 1.08998 * 109.47161 * 65.06632 * 14 12 11 33 33 H 1.09007 * 109.46766 * 305.06639 * 14 12 11 34 34 H 1.09002 * 109.50628 * 302.33388 * 17 16 15 35 35 H 1.09003 * 109.50661 * 62.41248 * 17 16 15 36 36 H 1.09007 * 109.50345 * 63.11297 * 18 17 16 37 37 H 1.09001 * 109.50479 * 183.23686 * 18 17 16 38 38 H 1.08997 * 109.50405 * 181.42392 * 20 19 18 39 39 H 1.09003 * 109.50342 * 61.29236 * 20 19 18 40 40 H 1.09002 * 109.50558 * 297.53920 * 21 16 15 41 41 H 1.09000 * 109.50655 * 57.62354 * 21 16 15 42 42 H 1.08995 * 110.48428 * 214.37240 * 22 15 14 43 43 H 1.08995 * 110.48941 * 337.02170 * 22 15 14 44 44 H 1.09003 * 110.75569 * 279.62396 * 23 22 15 45 45 H 1.09001 * 110.75806 * 156.25395 * 23 22 15 46 46 H 1.08993 * 110.48698 * 203.38219 * 24 23 22 47 47 H 1.09003 * 110.59727 * 80.78698 * 24 23 22 48 48 H 1.08997 * 110.03258 * 359.95210 * 25 15 14 49 49 H 1.09000 * 110.03206 * 121.38551 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5131 -4.9307 -0.0001 12 6 2.1870 -6.0979 -0.0007 13 8 3.3997 -6.0978 -0.0003 14 6 1.4335 -7.4031 -0.0008 15 6 2.4231 -8.5631 0.1259 16 7 3.2690 -8.3753 1.3121 17 6 2.4537 -8.2894 2.5324 18 6 3.3673 -8.0352 3.7343 19 8 4.3480 -9.0735 3.8093 20 6 5.1604 -9.1850 2.6375 21 6 4.2642 -9.4514 1.4252 22 6 1.6608 -9.9005 0.2269 23 6 1.6378 -10.4353 -1.2265 24 6 3.0366 -10.0372 -1.7594 25 6 3.2978 -8.6500 -1.1370 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.8721 -3.6042 0.8904 30 1 2.8721 -3.6042 -0.8895 31 1 0.5430 -4.9308 -0.0008 32 1 0.8763 -7.5009 -0.9324 33 1 0.7409 -7.4227 0.8407 34 1 1.7411 -7.4701 2.4371 35 1 1.9146 -9.2257 2.6766 36 1 3.8653 -7.0728 3.6158 37 1 2.7731 -8.0281 4.6481 38 1 5.8631 -10.0094 2.7588 39 1 5.7106 -8.2562 2.4864 40 1 3.7547 -10.4065 1.5521 41 1 4.8728 -9.4808 0.5214 42 1 2.1912 -10.5935 0.8800 43 1 0.6460 -9.7349 0.5885 44 1 0.8516 -9.9496 -1.8045 45 1 1.5141 -11.5182 -1.2378 46 1 3.0258 -9.9713 -2.8473 47 1 3.7906 -10.7517 -1.4288 48 1 3.0168 -7.8663 -1.8404 49 1 4.3500 -8.5528 -0.8697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330841483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:59 Heat of formation + Delta-G solvation = -84.158119 kcal Electronic energy + Delta-G solvation = -27349.145925 eV Core-core repulsion = 23696.754108 eV Total energy + Delta-G solvation = -3652.391817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.85225 -38.83641 -37.84405 -34.70894 -34.40911 -32.78632 -31.67503 -30.82522 -29.44305 -28.92299 -27.11193 -25.29821 -24.51540 -23.62366 -21.45130 -20.97956 -20.51710 -19.99544 -18.70924 -17.26670 -16.55322 -16.31135 -16.05018 -15.54081 -15.36135 -14.97530 -14.91241 -14.73889 -14.71894 -14.43904 -14.30741 -13.66935 -13.30845 -13.02910 -12.71435 -12.49903 -12.29026 -12.00580 -11.84358 -11.69612 -11.55495 -11.31506 -11.17467 -11.15006 -11.03490 -10.97083 -10.72326 -10.62227 -10.50592 -10.45088 -10.25493 -9.72447 -9.68373 -9.37477 -9.04060 -8.47518 -8.24988 -8.15836 -6.08058 -4.10602 3.24040 3.30100 3.36169 3.40419 3.60639 3.78653 3.84589 4.36413 4.42322 4.44812 4.66219 4.83292 4.90996 4.94206 5.06674 5.09252 5.14704 5.20590 5.25880 5.28991 5.34964 5.43007 5.47748 5.50184 5.53336 5.56176 5.62489 5.66816 5.72237 5.75502 5.83387 5.87410 5.93057 6.07809 6.15185 6.32521 6.41800 6.43680 6.80303 6.96205 7.06043 7.07546 7.10035 7.55532 7.65202 7.90964 8.17090 8.32135 8.87457 8.96432 9.54180 11.03546 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017391 B = 0.003135 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.606202 B = 8928.402477 C = 9779.038492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.126 3.874 11 N -0.732 5.732 12 C 0.505 3.495 13 O -0.517 6.517 14 C -0.132 4.132 15 C 0.132 3.868 16 N -0.501 5.501 17 C 0.015 3.985 18 C 0.065 3.935 19 O -0.389 6.389 20 C 0.064 3.936 21 C 0.017 3.983 22 C -0.156 4.156 23 C -0.120 4.120 24 C -0.129 4.129 25 C -0.104 4.104 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.393 0.607 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 -23.556 1.258 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.004 3.996 11 N -0.384 5.384 12 C 0.290 3.710 13 O -0.392 6.392 14 C -0.172 4.172 15 C 0.042 3.958 16 N -0.225 5.225 17 C -0.113 4.113 18 C -0.012 4.012 19 O -0.308 6.308 20 C -0.013 4.013 21 C -0.111 4.111 22 C -0.196 4.196 23 C -0.158 4.158 24 C -0.167 4.167 25 C -0.142 4.142 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.226 0.774 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.674 -23.071 1.384 23.403 hybrid contribution -0.765 0.464 -0.173 0.911 sum 2.909 -22.607 1.210 22.825 Atomic orbital electron populations 1.69952 1.06086 1.26819 1.50541 1.24993 0.94877 0.99377 0.95040 0.86528 0.79874 0.83070 0.78189 1.20577 1.21184 1.19719 1.21068 0.93230 0.90467 1.51132 0.92313 1.19313 0.94236 0.91261 0.97664 1.21599 0.95848 0.81735 1.00423 1.46368 1.10191 1.06658 1.75170 1.20251 0.88529 0.84885 0.77384 1.90689 1.13343 1.87259 1.47917 1.21914 0.98358 0.93179 1.03786 1.21395 0.91394 0.91810 0.91170 1.62376 1.15021 1.43974 1.01124 1.22791 0.96415 1.01124 0.90941 1.22644 0.90001 0.91214 0.97377 1.87937 1.48980 1.55245 1.38638 1.22653 0.92549 1.01984 0.84124 1.22820 0.95556 0.92954 0.99780 1.23115 1.00779 0.97842 0.97825 1.22422 0.97583 1.00242 0.95561 1.22452 0.96772 0.97263 1.00222 1.22186 1.00920 0.96154 0.94944 0.92887 0.96110 0.96083 0.92883 0.92966 0.77421 0.88771 0.89668 0.89824 0.94221 0.91975 0.88748 0.88917 0.92067 0.94155 0.89372 0.90991 0.91466 0.91326 0.91851 0.91630 0.91982 0.91232 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.13 2.69 5.61 -4.04 -0.02 2.67 16 11 N -0.73 -12.54 5.56 -60.30 -0.33 -12.88 16 12 C 0.51 8.11 7.09 -10.98 -0.08 8.03 16 13 O -0.52 -9.97 14.09 5.56 0.08 -9.90 16 14 C -0.13 -1.53 3.90 -27.88 -0.11 -1.63 16 15 C 0.13 1.46 0.16 -130.48 -0.02 1.44 16 16 N -0.50 -6.11 3.13 -217.39 -0.68 -6.79 16 17 C 0.02 0.18 5.01 -3.72 -0.02 0.16 16 18 C 0.06 0.76 7.01 37.20 0.26 1.02 16 19 O -0.39 -4.89 10.83 -35.23 -0.38 -5.27 16 20 C 0.06 0.70 7.01 37.21 0.26 0.96 16 21 C 0.02 0.18 4.99 -3.72 -0.02 0.16 16 22 C -0.16 -1.40 4.64 -25.07 -0.12 -1.52 16 23 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 24 C -0.13 -1.13 6.83 -25.07 -0.17 -1.30 16 25 C -0.10 -1.19 4.37 -25.62 -0.11 -1.30 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.39 5.88 8.47 -40.82 -0.35 5.54 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.87 6.64 -51.93 -0.35 0.52 16 34 H 0.08 0.98 6.25 -51.93 -0.32 0.65 16 35 H 0.04 0.42 7.17 -51.93 -0.37 0.05 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.41 6.08 -51.93 -0.32 0.10 16 41 H 0.09 0.91 6.04 -51.93 -0.31 0.60 16 42 H 0.07 0.67 5.61 -51.93 -0.29 0.38 16 43 H 0.07 0.57 7.81 -51.93 -0.41 0.16 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.90 7.28 -51.93 -0.38 0.52 16 49 H 0.08 1.02 6.12 -51.93 -0.32 0.70 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -31.60 370.31 -9.34 -40.94 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.45 Total: 2.90 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -0.87 Total: -5.55 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.28 Total: -45.15 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.30 Total: -15.17 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.60 -9.34 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330841483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.219 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds