Wall clock time and date at job start Fri Apr 10 2020 22:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99597 * 2 1 4 4 H 1.48501 * 109.46832 * 269.99947 * 3 2 1 5 5 H 1.48496 * 109.47220 * 29.99851 * 3 2 1 6 6 H 1.48495 * 109.47136 * 149.99831 * 3 2 1 7 7 C 1.37875 * 120.00554 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99729 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47084 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.34778 * 120.00074 * 179.97438 * 11 10 9 13 13 O 1.21273 * 119.99953 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00074 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.46943 * 185.06728 * 14 12 11 16 16 N 1.46903 * 110.01812 * 54.63307 * 15 14 12 17 17 C 1.47010 * 111.00397 * 58.60387 * 16 15 14 18 18 C 1.53090 * 109.29488 * 182.37147 * 17 16 15 19 19 O 1.43022 * 109.25954 * 303.22156 * 18 17 16 20 20 C 1.43023 * 113.77297 * 58.59830 * 19 18 17 21 21 C 1.47008 * 111.00056 * 182.24361 * 16 15 14 22 22 C 1.54270 * 110.06976 * 176.04340 * 15 14 12 23 23 C 1.54891 * 104.19205 * 95.69771 * 22 15 14 24 24 C 1.54892 * 102.75144 * 37.94159 * 23 22 15 25 25 C 1.53865 * 110.03299 * 293.23627 * 15 14 12 26 26 H 0.97001 * 120.00618 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47059 * 59.99679 * 9 7 2 28 28 H 1.08997 * 109.46924 * 300.00132 * 9 7 2 29 29 H 1.08993 * 109.47015 * 59.99747 * 10 9 7 30 30 H 1.09003 * 109.46879 * 299.99606 * 10 9 7 31 31 H 0.97009 * 120.00060 * 0.02562 * 11 10 9 32 32 H 1.08998 * 109.47161 * 65.06632 * 14 12 11 33 33 H 1.09007 * 109.46766 * 305.06639 * 14 12 11 34 34 H 1.09002 * 109.50628 * 302.33388 * 17 16 15 35 35 H 1.09003 * 109.50661 * 62.41248 * 17 16 15 36 36 H 1.09007 * 109.50345 * 63.11297 * 18 17 16 37 37 H 1.09001 * 109.50479 * 183.23686 * 18 17 16 38 38 H 1.08997 * 109.50405 * 181.42392 * 20 19 18 39 39 H 1.09003 * 109.50342 * 61.29236 * 20 19 18 40 40 H 1.09002 * 109.50558 * 297.53920 * 21 16 15 41 41 H 1.09000 * 109.50655 * 57.62354 * 21 16 15 42 42 H 1.08995 * 110.48428 * 214.37240 * 22 15 14 43 43 H 1.08995 * 110.48941 * 337.02170 * 22 15 14 44 44 H 1.09003 * 110.75569 * 279.62396 * 23 22 15 45 45 H 1.09001 * 110.75806 * 156.25395 * 23 22 15 46 46 H 1.08993 * 110.48698 * 203.38219 * 24 23 22 47 47 H 1.09003 * 110.59727 * 80.78698 * 24 23 22 48 48 H 1.08997 * 110.03258 * 359.95210 * 25 15 14 49 49 H 1.09000 * 110.03206 * 121.38551 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5131 -4.9307 -0.0001 12 6 2.1870 -6.0979 -0.0007 13 8 3.3997 -6.0978 -0.0003 14 6 1.4335 -7.4031 -0.0008 15 6 2.4231 -8.5631 0.1259 16 7 3.2690 -8.3753 1.3121 17 6 2.4537 -8.2894 2.5324 18 6 3.3673 -8.0352 3.7343 19 8 4.3480 -9.0735 3.8093 20 6 5.1604 -9.1850 2.6375 21 6 4.2642 -9.4514 1.4252 22 6 1.6608 -9.9005 0.2269 23 6 1.6378 -10.4353 -1.2265 24 6 3.0366 -10.0372 -1.7594 25 6 3.2978 -8.6500 -1.1370 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.8721 -3.6042 0.8904 30 1 2.8721 -3.6042 -0.8895 31 1 0.5430 -4.9308 -0.0008 32 1 0.8763 -7.5009 -0.9324 33 1 0.7409 -7.4227 0.8407 34 1 1.7411 -7.4701 2.4371 35 1 1.9146 -9.2257 2.6766 36 1 3.8653 -7.0728 3.6158 37 1 2.7731 -8.0281 4.6481 38 1 5.8631 -10.0094 2.7588 39 1 5.7106 -8.2562 2.4864 40 1 3.7547 -10.4065 1.5521 41 1 4.8728 -9.4808 0.5214 42 1 2.1912 -10.5935 0.8800 43 1 0.6460 -9.7349 0.5885 44 1 0.8516 -9.9496 -1.8045 45 1 1.5141 -11.5182 -1.2378 46 1 3.0258 -9.9713 -2.8473 47 1 3.7906 -10.7517 -1.4288 48 1 3.0168 -7.8663 -1.8404 49 1 4.3500 -8.5528 -0.8697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330841483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:58 Heat of formation + Delta-G solvation = -105.261936 kcal Electronic energy + Delta-G solvation = -27350.061055 eV Core-core repulsion = 23696.754108 eV Total energy + Delta-G solvation = -3653.306948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78587 -40.05865 -38.82175 -36.41920 -35.26772 -34.73121 -32.68725 -31.92215 -31.03603 -29.68464 -28.19319 -26.63654 -25.84823 -24.62036 -22.90336 -22.19881 -21.47959 -21.18079 -19.59861 -18.57519 -18.22508 -17.45893 -17.16296 -16.63820 -16.48735 -16.41855 -16.10358 -15.85590 -15.78022 -15.52570 -15.40161 -14.97413 -14.42569 -14.33527 -14.11110 -13.79357 -13.45764 -13.19290 -12.99295 -12.87045 -12.70436 -12.56318 -12.52271 -12.38216 -12.20276 -12.03683 -11.90496 -11.78316 -11.62984 -11.49593 -11.44938 -11.36673 -11.25752 -10.65371 -10.60117 -10.51720 -9.82992 -9.02158 -8.24315 -6.34694 1.40931 1.41333 1.52926 1.94708 2.33876 2.51917 2.77772 2.95738 3.10189 3.55687 3.62226 3.88805 3.97234 4.02513 4.12644 4.18503 4.20798 4.31370 4.31932 4.37166 4.52008 4.54027 4.56859 4.58941 4.65875 4.68152 4.72102 4.76705 4.80064 4.86294 4.88910 4.95827 4.97885 5.02571 5.12905 5.23459 5.27023 5.36139 5.42421 5.48949 5.58071 5.60270 5.81821 6.08264 6.18011 6.19548 6.24813 6.78356 6.84001 7.34689 7.55274 8.87439 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017391 B = 0.003135 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.606202 B = 8928.402477 C = 9779.038492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.148 3.852 11 N -0.730 5.730 12 C 0.505 3.495 13 O -0.551 6.551 14 C -0.124 4.124 15 C 0.130 3.870 16 N -0.526 5.526 17 C 0.019 3.981 18 C 0.063 3.937 19 O -0.400 6.400 20 C 0.062 3.938 21 C 0.022 3.978 22 C -0.147 4.147 23 C -0.115 4.115 24 C -0.124 4.124 25 C -0.104 4.104 26 H 0.266 0.734 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.405 0.595 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.038 0.962 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.048 0.952 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -25.066 1.178 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.014 4.014 10 C 0.024 3.976 11 N -0.383 5.383 12 C 0.292 3.708 13 O -0.428 6.428 14 C -0.164 4.164 15 C 0.040 3.960 16 N -0.250 5.250 17 C -0.109 4.109 18 C -0.014 4.014 19 O -0.319 6.319 20 C -0.015 4.015 21 C -0.106 4.106 22 C -0.186 4.186 23 C -0.153 4.153 24 C -0.161 4.161 25 C -0.142 4.142 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.240 0.760 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.038 -24.608 1.299 24.829 hybrid contribution -0.537 0.934 -0.152 1.088 sum 2.501 -23.675 1.147 23.834 Atomic orbital electron populations 1.70052 1.07495 1.27977 1.51050 1.25854 0.95789 1.03020 0.94413 0.85471 0.78637 0.78557 0.78551 1.19720 1.20406 1.19174 1.21475 0.93475 0.92107 1.51488 0.92588 1.19116 0.94225 0.91884 0.96128 1.21032 0.94762 0.82750 0.99031 1.46230 1.10732 1.05695 1.75627 1.21044 0.88355 0.85711 0.75730 1.90681 1.15156 1.87784 1.49181 1.21957 0.98414 0.90243 1.05766 1.21451 0.91292 0.92712 0.90508 1.62337 1.15853 1.45120 1.01730 1.22743 0.96131 1.01542 0.90446 1.22694 0.90026 0.89984 0.98661 1.87919 1.49278 1.55246 1.39419 1.22765 0.92748 1.01975 0.84017 1.22776 0.95275 0.93007 0.99493 1.23029 1.00898 0.96159 0.98558 1.22424 0.96920 1.01213 0.94739 1.22416 0.97731 0.95600 1.00381 1.22133 0.99778 0.97241 0.95004 0.92535 0.97486 0.97489 0.94357 0.94282 0.75972 0.86601 0.87604 0.90278 0.92816 0.94399 0.86877 0.86547 0.94017 0.93026 0.89429 0.90991 0.90301 0.90755 0.90347 0.91160 0.91309 0.93284 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.57 13.29 21.45 0.28 -54.29 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -31.02 9.11 25.60 0.23 -30.78 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.15 6.49 5.61 86.38 0.48 6.98 16 11 N -0.73 -25.05 5.56 -463.08 -2.57 -27.62 16 12 C 0.50 16.09 7.09 87.66 0.62 16.71 16 13 O -0.55 -21.69 14.09 -3.01 -0.04 -21.73 16 14 C -0.12 -2.64 3.90 29.85 0.12 -2.52 16 15 C 0.13 2.66 0.16 4.25 0.00 2.66 16 16 N -0.53 -12.41 3.13 -841.68 -2.63 -15.04 16 17 C 0.02 0.42 5.01 86.31 0.43 0.85 16 18 C 0.06 1.46 7.01 72.01 0.50 1.96 16 19 O -0.40 -9.75 10.83 -148.98 -1.61 -11.36 16 20 C 0.06 1.32 7.01 72.01 0.50 1.82 16 21 C 0.02 0.45 4.99 86.31 0.43 0.88 16 22 C -0.15 -2.18 4.64 31.67 0.15 -2.03 16 23 C -0.12 -1.47 6.91 31.89 0.22 -1.25 16 24 C -0.12 -1.91 6.83 31.67 0.22 -1.70 16 25 C -0.10 -2.28 4.37 31.32 0.14 -2.15 16 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.41 11.92 8.47 -92.70 -0.79 11.13 16 32 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.11 1.87 6.64 -2.38 -0.02 1.85 16 34 H 0.08 1.75 6.25 -2.39 -0.01 1.73 16 35 H 0.05 1.01 7.17 -2.39 -0.02 0.99 16 36 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 0.94 6.08 -2.39 -0.01 0.93 16 41 H 0.09 1.78 6.04 -2.39 -0.01 1.77 16 42 H 0.07 1.10 5.61 -2.39 -0.01 1.09 16 43 H 0.08 1.02 7.81 -2.39 -0.02 1.00 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 1.26 7.28 -2.39 -0.02 1.24 16 49 H 0.06 1.54 6.12 -2.39 -0.01 1.53 16 Total: -1.00 -68.59 370.31 0.27 -68.32 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.15 Total: 21.99 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 4.66 Total: -6.29 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -4.92 Total: -96.95 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.66 Total: -33.09 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -68.59 0.27 -68.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330841483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.938 kcal (2) G-P(sol) polarization free energy of solvation -68.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds