Wall clock time and date at job start Fri Apr 10 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48503 * 109.47251 * 269.99825 * 3 2 1 5 5 H 1.48501 * 109.47242 * 29.99983 * 3 2 1 6 6 H 1.48503 * 109.47130 * 149.99765 * 3 2 1 7 7 C 1.38809 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00180 * 163.06698 * 7 2 1 9 9 N 1.36938 * 120.00360 * 343.06722 * 7 2 1 10 10 C 1.46923 * 120.62627 * 331.83863 * 9 7 2 11 11 C 1.53192 * 108.77587 * 233.62889 * 10 9 7 12 12 C 1.53042 * 109.31128 * 305.36452 * 11 10 9 13 13 C 1.53001 * 109.45947 * 181.38298 * 12 11 10 14 14 N 1.46503 * 109.47056 * 174.97379 * 13 12 11 15 15 C 1.34774 * 119.99784 * 180.02562 * 14 13 12 16 16 O 1.21272 * 120.00590 * 0.02562 * 15 14 13 17 17 C 1.50710 * 119.99685 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.46694 * 179.97438 * 17 15 14 19 19 C 1.53010 * 109.46815 * 180.02562 * 18 17 15 20 20 H 1.08992 * 110.41872 * 52.69207 * 19 18 17 21 21 C 1.54476 * 110.37062 * 175.00091 * 19 18 17 22 22 C 1.54514 * 104.06268 * 142.80994 * 21 19 18 23 23 C 1.54473 * 104.18155 * 359.92973 * 22 21 19 24 24 O 1.44424 * 110.36994 * 290.37750 * 19 18 17 25 25 C 1.53040 * 109.52568 * 61.37063 * 12 11 10 26 26 C 1.46919 * 120.63345 * 151.85817 * 9 7 2 27 27 H 0.96994 * 120.00162 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58725 * 113.84249 * 10 9 7 29 29 H 1.09001 * 109.70889 * 353.49026 * 10 9 7 30 30 H 1.09007 * 109.50031 * 185.41769 * 11 10 9 31 31 H 1.08998 * 109.52468 * 65.33532 * 11 10 9 32 32 H 1.09000 * 109.46372 * 301.35743 * 12 11 10 33 33 H 1.09007 * 109.46981 * 54.97931 * 13 12 11 34 34 H 1.08990 * 109.47169 * 294.97668 * 13 12 11 35 35 H 0.97003 * 119.99951 * 0.02562 * 14 13 12 36 36 H 1.08993 * 109.46831 * 60.00058 * 17 15 14 37 37 H 1.09001 * 109.47042 * 300.00110 * 17 15 14 38 38 H 1.08993 * 109.47418 * 60.00437 * 18 17 15 39 39 H 1.09001 * 109.47482 * 299.99860 * 18 17 15 40 40 H 1.09005 * 110.51378 * 24.16266 * 21 19 18 41 41 H 1.09001 * 110.51133 * 261.45314 * 21 19 18 42 42 H 1.09000 * 110.51027 * 118.64257 * 22 21 19 43 43 H 1.09002 * 110.50856 * 241.21574 * 22 21 19 44 44 H 1.08997 * 110.37335 * 94.92260 * 23 22 21 45 45 H 1.08997 * 110.37144 * 217.26065 * 23 22 21 46 46 H 1.09007 * 109.49789 * 58.58209 * 25 12 11 47 47 H 1.09003 * 109.49562 * 178.67145 * 25 12 11 48 48 H 1.09004 * 109.58711 * 246.15673 * 26 9 7 49 49 H 1.08999 * 109.59095 * 6.44151 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3464 10 6 0.2264 -2.3398 1.2684 11 6 0.4984 -3.3180 2.4155 12 6 0.8134 -4.6999 1.8382 13 6 1.0519 -5.6878 2.9820 14 7 1.2347 -7.0342 2.4342 15 6 1.4597 -8.0737 3.2620 16 8 1.5104 -7.8946 4.4603 17 6 1.6472 -9.4588 2.6985 18 6 1.8858 -10.4466 3.8422 19 6 2.0767 -11.8528 3.2701 20 1 2.8492 -11.8488 2.5011 21 6 2.4431 -12.8459 4.3952 22 6 1.7067 -14.1463 4.0025 23 6 0.9800 -13.7875 2.6875 24 8 0.8325 -12.3492 2.7304 25 6 2.0687 -4.6162 0.9668 26 6 1.8143 -3.6529 -0.1969 27 1 -0.4850 0.8400 0.0004 28 1 -0.6767 -2.6411 0.7376 29 1 0.0965 -1.3343 1.6686 30 1 -0.3820 -3.3829 3.0549 31 1 1.3479 -2.9659 3.0008 32 1 -0.0266 -5.0409 1.2331 33 1 0.1923 -5.6819 3.6523 34 1 1.9451 -5.3958 3.5340 35 1 1.1938 -7.1775 1.4756 36 1 2.5067 -9.4651 2.0282 37 1 0.7537 -9.7504 2.1463 38 1 1.0266 -10.4405 4.5128 39 1 2.7794 -10.1548 4.3939 40 1 2.0861 -12.4807 5.3582 41 1 3.5202 -13.0106 4.4235 42 1 2.4199 -14.9538 3.8367 43 1 0.9875 -14.4253 4.7726 44 1 1.5831 -14.0810 1.8284 45 1 0.0036 -14.2705 2.6496 46 1 2.9035 -4.2516 1.5654 47 1 2.3061 -5.6053 0.5749 48 1 1.0407 -4.0614 -0.8472 49 1 2.7335 -3.5131 -0.7658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330900995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:04 Heat of formation + Delta-G solvation = -88.583525 kcal Electronic energy + Delta-G solvation = -25553.280233 eV Core-core repulsion = 21900.696516 eV Total energy + Delta-G solvation = -3652.583718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.04602 -39.44302 -37.80753 -34.96330 -33.78789 -32.81956 -32.40249 -30.82037 -29.77162 -28.98347 -26.80081 -24.72825 -23.65366 -22.29631 -21.97830 -21.26465 -20.97188 -20.23700 -19.06952 -17.21021 -16.80503 -16.64733 -16.14737 -15.89988 -15.64088 -15.34585 -14.80605 -14.19439 -14.11117 -13.89853 -13.59604 -13.47455 -13.25065 -13.17594 -12.94538 -12.34226 -12.29476 -12.17747 -11.99657 -11.87035 -11.73382 -11.32678 -11.28829 -11.13312 -11.00825 -10.98020 -10.70216 -10.49680 -10.24106 -10.21074 -10.11445 -9.97144 -9.79652 -9.53346 -9.40470 -8.93609 -8.45949 -6.65661 -5.78174 -3.20441 2.69349 3.25444 3.37784 3.44976 3.47528 3.51996 4.20655 4.31074 4.50478 4.52370 4.64108 4.67125 4.81646 4.95891 5.07169 5.14130 5.22692 5.26883 5.27585 5.31158 5.39441 5.41805 5.43224 5.48216 5.56798 5.62282 5.66377 5.78958 5.88983 5.97081 5.99709 6.06703 6.16978 6.33512 6.45439 6.49966 6.51574 6.61436 6.70874 6.78088 6.82644 6.99028 7.37931 7.57369 7.67011 7.80230 8.27826 8.46306 9.22493 9.86146 10.42917 11.30387 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.042728 B = 0.001966 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.147804 B =14236.959483 C =14347.704763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.123 3.877 14 N -0.726 5.726 15 C 0.509 3.491 16 O -0.549 6.549 17 C -0.140 4.140 18 C -0.096 4.096 19 C 0.073 3.927 20 H 0.070 0.930 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.044 3.956 24 O -0.371 6.371 25 C -0.127 4.127 26 C 0.145 3.855 27 H 0.253 0.747 28 H 0.017 0.983 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.016 0.984 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.251 -26.509 5.644 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.109 4.109 13 C -0.001 4.001 14 N -0.378 5.378 15 C 0.296 3.704 16 O -0.426 6.426 17 C -0.180 4.180 18 C -0.134 4.134 19 C 0.015 3.985 20 H 0.088 0.912 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.033 4.033 24 O -0.290 6.290 25 C -0.166 4.166 26 C 0.019 3.981 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.034 0.966 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.994 -26.072 6.433 27.020 hybrid contribution 0.543 0.637 -0.478 0.964 sum 3.537 -25.435 5.955 26.361 Atomic orbital electron populations 1.70025 1.05263 1.25488 1.53987 1.25042 0.95284 0.98411 1.00968 0.86318 0.79187 0.83705 0.77683 1.21426 1.21555 1.20510 1.19167 0.92504 0.84876 1.41596 0.91805 1.44043 1.35922 1.01498 1.50053 1.20758 0.88597 0.98166 0.87898 1.22180 1.00337 0.94694 1.00067 1.21308 0.98728 0.95410 0.95443 1.21565 1.01386 0.80439 0.96660 1.46143 1.72947 1.08212 1.10451 1.20699 0.76122 0.86701 0.86923 1.90686 1.50911 1.85694 1.15353 1.21654 1.04501 0.91921 0.99896 1.21396 1.04099 0.90692 0.97208 1.23095 0.86778 0.94178 0.94410 0.91204 1.22992 1.01084 0.94891 1.00001 1.22940 0.99995 0.98129 0.98363 1.23423 1.01052 0.82187 0.96640 1.89189 1.35708 1.19199 1.84941 1.22070 0.97020 0.98677 0.98817 1.20888 0.97498 0.87044 0.92705 0.93648 0.96465 0.89423 0.93090 0.92423 0.91339 0.91923 0.91737 0.76502 0.89051 0.88331 0.90214 0.89807 0.90278 0.90460 0.90649 0.90689 0.92309 0.89138 0.92220 0.93486 0.96628 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 11.19 55.49 0.62 -25.58 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.70 29.59 -169.99 -5.03 16.68 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 8 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -14.69 2.99 -172.32 -0.52 -15.21 16 10 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 11 C -0.13 -2.48 5.36 -26.61 -0.14 -2.63 16 12 C -0.09 -1.43 2.19 -90.58 -0.20 -1.62 16 13 C 0.12 1.77 5.06 -4.04 -0.02 1.75 16 14 N -0.73 -8.89 5.27 -60.29 -0.32 -9.21 16 15 C 0.51 6.57 7.83 -10.98 -0.09 6.48 16 16 O -0.55 -9.20 15.98 5.56 0.09 -9.11 16 17 C -0.14 -1.29 5.64 -27.88 -0.16 -1.45 16 18 C -0.10 -0.89 4.13 -26.73 -0.11 -1.00 16 19 C 0.07 0.57 3.25 -25.95 -0.08 0.49 16 20 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 21 C -0.15 -0.97 6.63 -25.16 -0.17 -1.14 16 22 C -0.16 -0.87 7.08 -25.16 -0.18 -1.05 16 23 C 0.04 0.29 7.65 37.93 0.29 0.58 16 24 O -0.37 -3.50 11.13 -35.23 -0.39 -3.89 16 25 C -0.13 -2.07 5.25 -26.61 -0.14 -2.21 16 26 C 0.15 2.96 6.52 -3.72 -0.02 2.93 16 27 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.40 4.02 7.65 -40.82 -0.31 3.71 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.87 8.01 -51.93 -0.42 0.45 16 38 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.05 0.63 7.15 -51.93 -0.37 0.26 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -32.17 383.07 -10.01 -42.18 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.97 Total: 0.31 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.27 Total: -1.94 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.21 Total: -50.00 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.30 Total: -13.00 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.17 -10.01 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330900995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.403 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds