Wall clock time and date at job start Fri Apr 10 2020 22:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48503 * 109.47251 * 269.99825 * 3 2 1 5 5 H 1.48501 * 109.47242 * 29.99983 * 3 2 1 6 6 H 1.48503 * 109.47130 * 149.99765 * 3 2 1 7 7 C 1.38809 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00180 * 163.06698 * 7 2 1 9 9 N 1.36938 * 120.00360 * 343.06722 * 7 2 1 10 10 C 1.46923 * 120.62627 * 331.83863 * 9 7 2 11 11 C 1.53192 * 108.77587 * 233.62889 * 10 9 7 12 12 C 1.53042 * 109.31128 * 305.36452 * 11 10 9 13 13 C 1.53001 * 109.45947 * 181.38298 * 12 11 10 14 14 N 1.46503 * 109.47056 * 174.97379 * 13 12 11 15 15 C 1.34774 * 119.99784 * 180.02562 * 14 13 12 16 16 O 1.21272 * 120.00590 * 0.02562 * 15 14 13 17 17 C 1.50710 * 119.99685 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.46694 * 179.97438 * 17 15 14 19 19 C 1.53010 * 109.46815 * 180.02562 * 18 17 15 20 20 H 1.08992 * 110.41872 * 52.69207 * 19 18 17 21 21 C 1.54476 * 110.37062 * 175.00091 * 19 18 17 22 22 C 1.54514 * 104.06268 * 142.80994 * 21 19 18 23 23 C 1.54473 * 104.18155 * 359.92973 * 22 21 19 24 24 O 1.44424 * 110.36994 * 290.37750 * 19 18 17 25 25 C 1.53040 * 109.52568 * 61.37063 * 12 11 10 26 26 C 1.46919 * 120.63345 * 151.85817 * 9 7 2 27 27 H 0.96994 * 120.00162 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58725 * 113.84249 * 10 9 7 29 29 H 1.09001 * 109.70889 * 353.49026 * 10 9 7 30 30 H 1.09007 * 109.50031 * 185.41769 * 11 10 9 31 31 H 1.08998 * 109.52468 * 65.33532 * 11 10 9 32 32 H 1.09000 * 109.46372 * 301.35743 * 12 11 10 33 33 H 1.09007 * 109.46981 * 54.97931 * 13 12 11 34 34 H 1.08990 * 109.47169 * 294.97668 * 13 12 11 35 35 H 0.97003 * 119.99951 * 0.02562 * 14 13 12 36 36 H 1.08993 * 109.46831 * 60.00058 * 17 15 14 37 37 H 1.09001 * 109.47042 * 300.00110 * 17 15 14 38 38 H 1.08993 * 109.47418 * 60.00437 * 18 17 15 39 39 H 1.09001 * 109.47482 * 299.99860 * 18 17 15 40 40 H 1.09005 * 110.51378 * 24.16266 * 21 19 18 41 41 H 1.09001 * 110.51133 * 261.45314 * 21 19 18 42 42 H 1.09000 * 110.51027 * 118.64257 * 22 21 19 43 43 H 1.09002 * 110.50856 * 241.21574 * 22 21 19 44 44 H 1.08997 * 110.37335 * 94.92260 * 23 22 21 45 45 H 1.08997 * 110.37144 * 217.26065 * 23 22 21 46 46 H 1.09007 * 109.49789 * 58.58209 * 25 12 11 47 47 H 1.09003 * 109.49562 * 178.67145 * 25 12 11 48 48 H 1.09004 * 109.58711 * 246.15673 * 26 9 7 49 49 H 1.08999 * 109.59095 * 6.44151 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3464 10 6 0.2264 -2.3398 1.2684 11 6 0.4984 -3.3180 2.4155 12 6 0.8134 -4.6999 1.8382 13 6 1.0519 -5.6878 2.9820 14 7 1.2347 -7.0342 2.4342 15 6 1.4597 -8.0737 3.2620 16 8 1.5104 -7.8946 4.4603 17 6 1.6472 -9.4588 2.6985 18 6 1.8858 -10.4466 3.8422 19 6 2.0767 -11.8528 3.2701 20 1 2.8492 -11.8488 2.5011 21 6 2.4431 -12.8459 4.3952 22 6 1.7067 -14.1463 4.0025 23 6 0.9800 -13.7875 2.6875 24 8 0.8325 -12.3492 2.7304 25 6 2.0687 -4.6162 0.9668 26 6 1.8143 -3.6529 -0.1969 27 1 -0.4850 0.8400 0.0004 28 1 -0.6767 -2.6411 0.7376 29 1 0.0965 -1.3343 1.6686 30 1 -0.3820 -3.3829 3.0549 31 1 1.3479 -2.9659 3.0008 32 1 -0.0266 -5.0409 1.2331 33 1 0.1923 -5.6819 3.6523 34 1 1.9451 -5.3958 3.5340 35 1 1.1938 -7.1775 1.4756 36 1 2.5067 -9.4651 2.0282 37 1 0.7537 -9.7504 2.1463 38 1 1.0266 -10.4405 4.5128 39 1 2.7794 -10.1548 4.3939 40 1 2.0861 -12.4807 5.3582 41 1 3.5202 -13.0106 4.4235 42 1 2.4199 -14.9538 3.8367 43 1 0.9875 -14.4253 4.7726 44 1 1.5831 -14.0810 1.8284 45 1 0.0036 -14.2705 2.6496 46 1 2.9035 -4.2516 1.5654 47 1 2.3061 -5.6053 0.5749 48 1 1.0407 -4.0614 -0.8472 49 1 2.7335 -3.5131 -0.7658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330900995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:03 Heat of formation + Delta-G solvation = -108.875857 kcal Electronic energy + Delta-G solvation = -25554.160175 eV Core-core repulsion = 21900.696516 eV Total energy + Delta-G solvation = -3653.463659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94962 -40.19395 -39.31604 -36.41637 -34.58171 -34.39986 -32.93128 -32.51908 -31.41625 -29.79195 -28.22448 -26.02590 -24.84884 -23.80539 -22.81501 -22.37414 -21.80628 -21.29578 -20.60765 -18.72228 -17.99924 -17.41419 -16.99957 -16.85174 -16.60700 -16.40899 -16.19571 -15.69286 -15.31249 -15.23025 -14.81703 -14.72526 -14.54844 -14.09472 -14.04687 -13.79466 -13.67110 -13.34134 -12.99354 -12.81144 -12.75781 -12.57639 -12.55020 -12.30572 -12.26581 -12.01971 -11.89159 -11.84106 -11.78706 -11.61459 -11.45838 -11.25794 -11.10448 -10.79777 -10.66710 -10.52549 -10.03903 -8.66206 -7.87074 -5.31893 1.45641 1.47689 1.57076 1.69464 2.26682 2.51473 2.99587 3.27549 3.64781 3.71759 3.77073 3.83919 3.90464 3.96242 4.07608 4.08565 4.13836 4.20300 4.42554 4.50464 4.52956 4.54591 4.60442 4.70002 4.74100 4.77804 4.78321 4.85286 4.88100 4.94151 5.00650 5.02824 5.09808 5.12583 5.15546 5.19369 5.29094 5.29675 5.31389 5.40417 5.50131 5.56019 5.66261 5.79147 5.97817 6.40349 6.61140 7.16128 7.30267 7.88643 8.39408 9.19138 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.042728 B = 0.001966 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.147804 B =14236.959483 C =14347.704763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.123 4.123 12 C -0.078 4.078 13 C 0.136 3.864 14 N -0.717 5.717 15 C 0.507 3.493 16 O -0.591 6.591 17 C -0.130 4.130 18 C -0.094 4.094 19 C 0.074 3.926 20 H 0.086 0.914 21 C -0.154 4.154 22 C -0.154 4.154 23 C 0.037 3.963 24 O -0.398 6.398 25 C -0.113 4.113 26 C 0.139 3.861 27 H 0.249 0.751 28 H -0.002 1.002 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.415 0.585 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.018 0.982 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 -28.760 5.181 29.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.793 3.207 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.336 5.336 10 C 0.052 3.948 11 C -0.163 4.163 12 C -0.097 4.097 13 C 0.011 3.989 14 N -0.369 5.369 15 C 0.295 3.705 16 O -0.472 6.472 17 C -0.169 4.169 18 C -0.132 4.132 19 C 0.017 3.983 20 H 0.104 0.896 21 C -0.192 4.192 22 C -0.192 4.192 23 C -0.039 4.039 24 O -0.318 6.318 25 C -0.152 4.152 26 C 0.014 3.986 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.252 0.748 36 H 0.138 0.862 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.036 0.964 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.344 -28.364 5.940 29.303 hybrid contribution 0.111 1.293 -0.364 1.348 sum 4.455 -27.071 5.576 27.996 Atomic orbital electron populations 1.70174 1.06627 1.25790 1.55527 1.25787 0.96051 1.01483 1.01453 0.85317 0.78063 0.79721 0.77593 1.21042 1.21937 1.19689 1.19497 0.92783 0.86205 1.40711 0.91745 1.44328 1.35973 1.02472 1.50823 1.20557 0.87851 0.97474 0.88962 1.21986 1.00785 0.95224 0.98258 1.21140 0.98803 0.93951 0.95764 1.21232 1.00733 0.81208 0.95680 1.46024 1.72498 1.07201 1.11224 1.21343 0.74888 0.87887 0.86334 1.90674 1.52806 1.86407 1.17335 1.21663 1.06062 0.89160 1.00059 1.21347 1.02909 0.91980 0.96970 1.23128 0.86731 0.93316 0.95163 0.89612 1.23021 1.02108 0.94987 0.99086 1.22946 1.00193 0.98172 0.97853 1.23609 1.01862 0.80892 0.97559 1.89152 1.36600 1.20841 1.85169 1.21922 0.96722 0.99460 0.97106 1.21084 0.97293 0.85955 0.94277 0.94155 0.98373 0.93100 0.91463 0.93201 0.90574 0.92435 0.92740 0.74843 0.86229 0.87444 0.92586 0.90115 0.91295 0.88974 0.88912 0.90862 0.91066 0.88599 0.93181 0.89516 0.96404 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 11.19 21.65 0.24 -55.48 16 2 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 3 Si 0.96 45.24 29.59 68.60 2.03 47.27 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.26 -14.47 9.58 84.03 0.81 -13.66 16 8 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 9 N -0.61 -30.56 2.99 -699.11 -2.09 -32.65 16 10 C 0.18 8.53 5.30 86.36 0.46 8.99 16 11 C -0.12 -4.54 5.36 30.67 0.16 -4.37 16 12 C -0.08 -2.31 2.19 -10.77 -0.02 -2.34 16 13 C 0.14 3.65 5.06 86.38 0.44 4.09 16 14 N -0.72 -15.64 5.27 -463.06 -2.44 -18.08 16 15 C 0.51 12.12 7.83 87.66 0.69 12.80 16 16 O -0.59 -19.42 15.98 -3.01 -0.05 -19.47 16 17 C -0.13 -2.07 5.64 29.85 0.17 -1.91 16 18 C -0.09 -1.62 4.13 30.60 0.13 -1.50 16 19 C 0.07 1.01 3.25 31.10 0.10 1.11 16 20 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 21 C -0.15 -1.72 6.63 31.61 0.21 -1.51 16 22 C -0.15 -1.40 7.08 31.61 0.22 -1.18 16 23 C 0.04 0.41 7.65 72.48 0.55 0.96 16 24 O -0.40 -6.82 11.13 -148.98 -1.66 -8.48 16 25 C -0.11 -3.43 5.25 30.67 0.16 -3.27 16 26 C 0.14 5.50 6.52 86.36 0.56 6.06 16 27 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.05 2.81 6.06 -2.39 -0.01 2.79 16 30 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.41 6.75 7.65 -92.71 -0.71 6.04 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 37 H 0.11 1.59 8.01 -2.39 -0.02 1.57 16 38 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 39 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 40 H 0.07 0.89 7.87 -2.38 -0.02 0.87 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.09 1.98 7.15 -2.39 -0.02 1.96 16 48 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 Total: -1.00 -71.25 383.07 1.28 -69.96 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.20 Total: 15.20 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.05 Total: 1.74 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -4.29 Total: -106.21 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.71 Total: -27.95 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.25 1.28 -69.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330900995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.913 kcal (2) G-P(sol) polarization free energy of solvation -71.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds