Wall clock time and date at job start Fri Apr 10 2020 22:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99729 * 2 1 4 4 H 1.48499 * 109.47104 * 239.99668 * 3 2 1 5 5 H 1.48502 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47270 * 119.99917 * 3 2 1 7 7 C 1.37877 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00255 * 179.72720 * 7 2 1 9 9 C 1.50706 * 119.99617 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46731 * 179.72697 * 9 7 2 11 11 C 1.50696 * 109.47152 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99881 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00610 * 180.02562 * 11 10 9 14 14 C 1.46930 * 120.62592 * 359.97438 * 13 11 10 15 15 C 1.53193 * 108.77378 * 233.59017 * 14 13 11 16 16 C 1.53045 * 109.31249 * 305.36266 * 15 14 13 17 17 C 1.53046 * 109.53476 * 61.36722 * 16 15 14 18 18 H 1.08994 * 109.49546 * 58.58507 * 17 16 15 19 19 C 1.52997 * 109.49287 * 178.65366 * 17 16 15 20 20 N 1.46906 * 109.46934 * 184.96705 * 19 17 16 21 21 C 1.47009 * 110.99748 * 199.38250 * 20 19 17 22 22 C 1.53102 * 109.25681 * 177.60745 * 21 20 19 23 23 O 1.43016 * 109.26073 * 56.84227 * 22 21 20 24 24 C 1.43016 * 113.74145 * 301.33857 * 23 22 21 25 25 C 1.47014 * 110.99921 * 75.74514 * 20 19 17 26 26 C 1.46920 * 120.63672 * 179.71837 * 13 11 10 27 27 H 0.97001 * 120.00251 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47189 * 299.72467 * 9 7 2 29 29 H 1.08993 * 109.46861 * 59.72635 * 9 7 2 30 30 H 1.09003 * 109.46992 * 299.99561 * 10 9 7 31 31 H 1.08997 * 109.47257 * 59.99869 * 10 9 7 32 32 H 1.08998 * 109.58481 * 353.37253 * 14 13 11 33 33 H 1.08994 * 109.58570 * 113.65753 * 14 13 11 34 34 H 1.08993 * 109.50057 * 65.31580 * 15 14 13 35 35 H 1.08999 * 109.49694 * 185.38375 * 15 14 13 36 36 H 1.08996 * 109.46078 * 181.38724 * 16 15 14 37 37 H 1.09000 * 109.46042 * 301.34803 * 16 15 14 38 38 H 1.08999 * 109.47505 * 304.95993 * 19 17 16 39 39 H 1.08995 * 109.47715 * 64.96688 * 19 17 16 40 40 H 1.09003 * 109.50570 * 297.53633 * 21 20 19 41 41 H 1.08990 * 109.51363 * 57.67115 * 21 20 19 42 42 H 1.09002 * 109.50319 * 296.91025 * 22 21 20 43 43 H 1.08998 * 109.54515 * 176.80264 * 22 21 20 44 44 H 1.09012 * 109.50054 * 298.72970 * 24 23 22 45 45 H 1.09002 * 109.54307 * 178.62671 * 24 23 22 46 46 H 1.09003 * 109.50316 * 302.32520 * 25 20 19 47 47 H 1.08997 * 109.50869 * 62.41377 * 25 20 19 48 48 H 1.09004 * 109.58862 * 246.20255 * 26 13 11 49 49 H 1.09001 * 109.58293 * 6.62039 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 -0.0039 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 -0.0057 11 6 1.4920 -4.9671 -0.0063 12 8 0.2791 -4.9672 -0.0017 13 7 2.1658 -6.1343 -0.0110 14 6 3.6350 -6.1505 -0.0160 15 6 4.1146 -7.0144 -1.1866 16 6 3.4711 -8.3996 -1.0903 17 6 1.9494 -8.2645 -1.1813 18 1 1.6826 -7.7828 -2.1219 19 6 1.3089 -9.6526 -1.1186 20 7 -0.1406 -9.5328 -1.3251 21 6 -0.8436 -10.7250 -0.8296 22 6 -2.3518 -10.5331 -1.0094 23 8 -2.6333 -10.2720 -2.3870 24 6 -1.9652 -9.1172 -2.9024 25 6 -0.4531 -9.2949 -2.7418 26 6 1.4454 -7.4148 -0.0054 27 1 -0.4850 0.8400 -0.0004 28 1 0.6278 -2.5588 0.8927 29 1 0.6211 -2.5549 -0.8872 30 1 2.8686 -3.6023 -0.8980 31 1 2.8754 -3.6062 0.8820 32 1 4.0111 -5.1342 -0.1338 33 1 3.9990 -6.5684 0.9225 34 1 3.8274 -6.5445 -2.1272 35 1 5.1993 -7.1130 -1.1456 36 1 3.8298 -9.0243 -1.9083 37 1 3.7387 -8.8589 -0.1386 38 1 1.7356 -10.2852 -1.8970 39 1 1.5013 -10.0978 -0.1425 40 1 -0.5184 -11.5997 -1.3929 41 1 -0.6183 -10.8675 0.2272 42 1 -2.6862 -9.6908 -0.4036 43 1 -2.8744 -11.4369 -0.6961 44 1 -2.2884 -8.2338 -2.3517 45 1 -2.2075 -8.9967 -3.9583 46 1 0.0574 -8.3934 -3.0807 47 1 -0.1209 -10.1464 -3.3358 48 1 1.6341 -7.9362 0.9330 49 1 0.3763 -7.2330 -0.1161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330908361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:05 Heat of formation + Delta-G solvation = -115.166096 kcal Electronic energy + Delta-G solvation = -26689.729898 eV Core-core repulsion = 23035.993473 eV Total energy + Delta-G solvation = -3653.736424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27227 -40.48602 -38.69505 -36.78198 -35.59942 -34.12835 -32.94875 -32.34233 -32.10964 -28.96205 -27.93450 -26.07472 -25.55192 -25.05597 -23.38730 -22.86398 -21.41080 -21.02270 -19.74964 -18.79964 -17.62941 -17.55450 -17.21061 -16.85130 -16.59474 -16.43998 -16.10322 -16.03460 -15.70256 -15.32397 -15.26653 -14.87873 -14.65561 -14.20755 -14.10469 -13.98785 -13.62579 -13.61507 -13.21995 -13.06292 -12.81576 -12.77696 -12.54638 -12.47079 -12.36290 -11.95941 -11.90726 -11.80249 -11.72090 -11.53523 -11.46916 -11.32623 -11.30585 -10.71286 -10.58140 -10.56219 -9.56460 -9.33030 -8.17614 -6.32359 1.41718 1.46729 1.54460 1.72070 2.12286 2.43684 2.71071 2.91401 3.14898 3.70690 3.74243 3.86771 3.91755 3.97485 4.09633 4.12157 4.15098 4.17266 4.26775 4.37177 4.43282 4.47262 4.51271 4.58596 4.62401 4.66769 4.68826 4.71248 4.76361 4.77061 4.86182 4.95454 4.97466 5.00992 5.05155 5.15955 5.18526 5.29426 5.47645 5.48800 5.61664 5.71433 5.84844 5.94790 6.02152 6.12355 6.17191 6.47473 6.85865 7.31624 7.38129 8.94994 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.002996 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.002124 B = 9343.087428 C =10553.913166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.045 3.955 10 C -0.114 4.114 11 C 0.507 3.493 12 O -0.592 6.592 13 N -0.614 5.614 14 C 0.096 3.904 15 C -0.129 4.129 16 C -0.107 4.107 17 C -0.087 4.087 18 H 0.053 0.947 19 C 0.069 3.931 20 N -0.557 5.557 21 C 0.024 3.976 22 C 0.056 3.944 23 O -0.403 6.403 24 C 0.060 3.940 25 C 0.025 3.975 26 C 0.126 3.874 27 H 0.263 0.737 28 H -0.020 1.020 29 H -0.021 1.021 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.100 0.900 42 H 0.047 0.953 43 H 0.119 0.881 44 H 0.041 0.959 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.050 0.950 48 H 0.073 0.927 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.983 -26.194 -3.031 27.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.007 3.993 10 C -0.154 4.154 11 C 0.297 3.703 12 O -0.472 6.472 13 N -0.347 5.347 14 C -0.025 4.025 15 C -0.167 4.167 16 C -0.145 4.145 17 C -0.107 4.107 18 H 0.071 0.929 19 C -0.059 4.059 20 N -0.283 5.283 21 C -0.104 4.104 22 C -0.020 4.020 23 O -0.322 6.322 24 C -0.017 4.017 25 C -0.103 4.103 26 C 0.004 3.996 27 H 0.071 0.929 28 H -0.002 1.002 29 H -0.003 1.003 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.118 0.882 42 H 0.065 0.935 43 H 0.137 0.863 44 H 0.060 0.940 45 H 0.129 0.871 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.920 -25.814 -2.862 27.153 hybrid contribution -0.036 0.725 -0.326 0.796 sum 7.884 -25.089 -3.188 26.491 Atomic orbital electron populations 1.70184 1.08386 1.27886 1.51367 1.26169 0.95729 1.04030 0.94570 0.85354 0.78042 0.77185 0.79541 1.18602 1.21343 1.18573 1.21676 0.93980 0.91531 1.50970 0.90534 1.18665 0.93633 0.92553 0.94431 1.21614 0.99239 0.90339 1.04209 1.21387 0.87651 0.86816 0.74465 1.90640 1.16717 1.88052 1.51808 1.48322 1.08237 1.05163 1.73007 1.22067 0.77487 1.02621 1.00356 1.21897 1.01943 0.95438 0.97452 1.21531 0.92240 0.97046 1.03664 1.21508 0.96472 0.95168 0.97554 0.92857 1.22126 0.85666 0.95563 1.02498 1.62119 1.09581 1.38693 1.17860 1.22782 0.94571 0.91000 1.02024 1.22845 0.94965 1.02150 0.82089 1.87937 1.70229 1.47082 1.26905 1.22712 0.90950 0.87732 1.00274 1.22708 0.96968 1.01627 0.89006 1.21575 0.96895 0.82690 0.98471 0.92852 1.00201 1.00265 0.88221 0.88065 0.89241 0.89370 0.92851 0.87787 0.90110 0.90023 0.92816 0.89064 0.93360 0.88163 0.93492 0.86328 0.94026 0.87090 0.90333 0.93196 0.90910 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.65 13.29 21.45 0.28 -60.37 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 3 Si 0.98 44.73 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.59 4.26 29.85 0.13 2.71 16 10 C -0.11 -4.84 3.99 29.85 0.12 -4.72 16 11 C 0.51 21.18 7.70 87.66 0.67 21.85 16 12 O -0.59 -31.11 15.40 -3.06 -0.05 -31.15 16 13 N -0.61 -18.33 2.97 -818.14 -2.43 -20.76 16 14 C 0.10 1.93 6.34 86.36 0.55 2.48 16 15 C -0.13 -1.93 6.08 30.67 0.19 -1.74 16 16 C -0.11 -1.39 5.17 30.62 0.16 -1.23 16 17 C -0.09 -1.65 2.40 -10.58 -0.03 -1.68 16 18 H 0.05 1.26 6.75 -2.39 -0.02 1.24 16 19 C 0.07 1.06 4.39 86.30 0.38 1.44 16 20 N -0.56 -10.97 4.24 -895.23 -3.80 -14.77 16 21 C 0.02 0.38 5.60 86.32 0.48 0.87 16 22 C 0.06 1.03 7.01 72.02 0.50 1.54 16 23 O -0.40 -9.30 10.83 -148.98 -1.61 -10.91 16 24 C 0.06 1.33 7.01 72.01 0.50 1.83 16 25 C 0.03 0.50 5.47 86.31 0.47 0.98 16 26 C 0.13 3.32 5.56 86.50 0.48 3.81 16 27 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 28 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 29 H -0.02 -1.38 8.10 -2.39 -0.02 -1.40 16 30 H 0.10 3.74 7.69 -2.39 -0.02 3.72 16 31 H 0.10 3.78 7.94 -2.39 -0.02 3.76 16 32 H 0.09 1.84 5.93 -2.39 -0.01 1.83 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.70 7.99 -2.39 -0.02 0.68 16 39 H 0.09 1.14 7.86 -2.39 -0.02 1.12 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 1.30 8.02 -2.39 -0.02 1.28 16 42 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 1.71 6.74 -2.39 -0.02 1.69 16 47 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 48 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 49 H 0.06 2.15 6.80 -2.39 -0.02 2.13 16 Total: -1.00 -80.94 378.78 0.64 -80.30 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.90 Total: 14.07 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.31 Total: -3.17 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -5.94 Total: -95.89 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -1.66 Total: -42.06 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -80.94 0.64 -80.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330908361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.864 kcal (2) G-P(sol) polarization free energy of solvation -80.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds