Wall clock time and date at job start Fri Apr 10 2020 22:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00328 * 2 1 4 4 H 1.48500 * 109.47454 * 269.99729 * 3 2 1 5 5 H 1.48501 * 109.47157 * 30.00057 * 3 2 1 6 6 H 1.48505 * 109.47131 * 150.00146 * 3 2 1 7 7 C 1.37884 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99738 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99870 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46934 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46934 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00298 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99796 * 179.97438 * 11 10 9 14 14 C 1.46929 * 120.63170 * 359.97438 * 13 11 10 15 15 C 1.53190 * 108.77429 * 126.43648 * 14 13 11 16 16 C 1.53043 * 109.31675 * 54.63268 * 15 14 13 17 17 C 1.53034 * 109.53665 * 298.63880 * 16 15 14 18 18 H 1.08994 * 109.50162 * 301.37196 * 17 16 15 19 19 C 1.53007 * 109.49636 * 181.31078 * 17 16 15 20 20 N 1.46900 * 109.47281 * 175.06573 * 19 17 16 21 21 C 1.47014 * 111.00019 * 190.00296 * 20 19 17 22 22 C 1.53096 * 109.25675 * 182.39166 * 21 20 19 23 23 O 1.43015 * 109.25724 * 303.14825 * 22 21 20 24 24 C 1.43010 * 113.73980 * 58.67537 * 23 22 21 25 25 C 1.47017 * 110.99765 * 313.63672 * 20 19 17 26 26 C 1.46937 * 120.60424 * 180.02562 * 13 11 10 27 27 H 0.97004 * 119.99756 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47057 * 60.00175 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00031 * 9 7 2 30 30 H 1.08994 * 109.47243 * 59.99512 * 10 9 7 31 31 H 1.09005 * 109.46895 * 299.99868 * 10 9 7 32 32 H 1.08997 * 109.58573 * 6.64794 * 14 13 11 33 33 H 1.09002 * 109.58658 * 246.22396 * 14 13 11 34 34 H 1.09002 * 109.49955 * 294.68384 * 15 14 13 35 35 H 1.08996 * 109.52576 * 174.60593 * 15 14 13 36 36 H 1.08990 * 109.46281 * 178.61164 * 16 15 14 37 37 H 1.09005 * 109.45418 * 58.65618 * 16 15 14 38 38 H 1.09005 * 109.47084 * 55.06358 * 19 17 16 39 39 H 1.09000 * 109.47004 * 295.06585 * 19 17 16 40 40 H 1.09004 * 109.50706 * 62.45483 * 21 20 19 41 41 H 1.08995 * 109.54210 * 302.34427 * 21 20 19 42 42 H 1.08997 * 109.50375 * 183.21864 * 22 21 20 43 43 H 1.08996 * 109.54637 * 63.10402 * 22 21 20 44 44 H 1.08993 * 109.51045 * 61.26026 * 24 23 22 45 45 H 1.08999 * 109.51323 * 181.39624 * 24 23 22 46 46 H 1.09006 * 109.50736 * 297.54404 * 25 20 19 47 47 H 1.08995 * 109.50709 * 57.63009 * 25 20 19 48 48 H 1.08998 * 109.56375 * 113.76505 * 26 13 11 49 49 H 1.08998 * 109.61669 * 353.33262 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4643 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6368 0.0010 11 6 5.5283 -2.6369 0.0009 12 8 6.1348 -1.5866 0.0005 13 7 6.2021 -3.8041 0.0014 14 6 5.4814 -5.0845 0.0024 15 6 5.9898 -5.9374 -1.1642 16 6 7.5112 -6.0724 -1.0673 17 6 8.1550 -4.6875 -1.1649 18 1 7.8719 -4.2202 -2.1080 19 6 9.6774 -4.8265 -1.1007 20 7 10.2985 -3.5122 -1.3126 21 6 11.7518 -3.6394 -1.4944 22 6 12.3649 -2.2455 -1.6519 23 8 11.7385 -1.5760 -2.7495 24 6 10.3228 -1.4341 -2.6053 25 6 9.6889 -2.8199 -2.4574 26 6 7.6714 -3.8198 0.0019 27 1 -0.4850 0.8401 0.0004 28 1 3.8744 -0.6803 0.8911 29 1 3.8751 -0.6806 -0.8888 30 1 3.6582 -3.1504 -0.8891 31 1 3.6576 -3.1508 0.8908 32 1 4.4133 -4.9027 -0.1161 33 1 5.6634 -5.6055 0.9424 34 1 5.7264 -5.4582 -2.1071 35 1 5.5332 -6.9261 -1.1187 36 1 7.8727 -6.6992 -1.8822 37 1 7.7751 -6.5292 -0.1134 38 1 10.0123 -5.5159 -1.8759 39 1 9.9662 -5.2114 -0.1227 40 1 11.9566 -4.2302 -2.3873 41 1 12.1863 -4.1319 -0.6246 42 1 13.4338 -2.3376 -1.8440 43 1 12.2073 -1.6724 -0.7383 44 1 10.1051 -0.8380 -1.7192 45 1 9.9148 -0.9395 -3.4867 46 1 9.8607 -3.3976 -3.3657 47 1 8.6170 -2.7146 -2.2904 48 1 8.0316 -4.2374 0.9420 49 1 8.0482 -2.8040 -0.1174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330908363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:08 Heat of formation + Delta-G solvation = -84.673645 kcal Electronic energy + Delta-G solvation = -26938.114902 eV Core-core repulsion = 23285.700730 eV Total energy + Delta-G solvation = -3652.414172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.38846 -39.52590 -37.67123 -35.93460 -33.55451 -33.02319 -31.81253 -31.34210 -31.00962 -28.16877 -26.60551 -25.02937 -24.52350 -24.27726 -22.15368 -21.27952 -20.71397 -19.86542 -18.53712 -17.22619 -16.88792 -16.34613 -16.20909 -15.88183 -15.42792 -15.28879 -15.10218 -14.95140 -14.50618 -14.45497 -14.10325 -13.82108 -13.43385 -13.29521 -12.97140 -12.77055 -12.54766 -12.41914 -12.24914 -12.01951 -11.79833 -11.64039 -11.37965 -11.22857 -10.99964 -10.95155 -10.88110 -10.64937 -10.57249 -10.10405 -10.00382 -9.89643 -9.76502 -9.20133 -9.10266 -8.67756 -8.50549 -8.42540 -6.02133 -4.00649 3.12038 3.24629 3.38926 3.42494 3.45557 3.56936 3.64783 4.37501 4.52162 4.55719 4.61838 4.63086 4.74045 4.82519 4.85612 4.89533 5.02450 5.10439 5.16152 5.25359 5.28432 5.32861 5.33579 5.38260 5.40071 5.44108 5.50666 5.53217 5.63931 5.68921 5.72569 5.76063 5.84363 5.90012 6.05928 6.09594 6.13013 6.18050 6.61890 6.65016 6.67592 6.77738 6.90110 7.38242 7.45506 7.68459 7.81185 8.50856 8.66476 9.00916 9.61189 11.10730 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.003456 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.594613 B = 8100.711400 C = 9636.884130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.539 6.539 13 N -0.625 5.625 14 C 0.106 3.894 15 C -0.134 4.134 16 C -0.112 4.112 17 C -0.108 4.108 18 H 0.079 0.921 19 C 0.064 3.936 20 N -0.534 5.534 21 C 0.019 3.981 22 C 0.063 3.937 23 O -0.388 6.388 24 C 0.062 3.938 25 C 0.012 3.988 26 C 0.124 3.876 27 H 0.263 0.737 28 H 0.023 0.977 29 H 0.018 0.982 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.040 0.960 47 H 0.097 0.903 48 H 0.059 0.941 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.068 -14.554 -3.220 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.036 4.036 10 C -0.161 4.161 11 C 0.303 3.697 12 O -0.415 6.415 13 N -0.360 5.360 14 C -0.017 4.017 15 C -0.173 4.173 16 C -0.150 4.150 17 C -0.128 4.128 18 H 0.097 0.903 19 C -0.064 4.064 20 N -0.260 5.260 21 C -0.109 4.109 22 C -0.014 4.014 23 O -0.306 6.306 24 C -0.014 4.014 25 C -0.116 4.116 26 C 0.001 3.999 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.058 0.942 47 H 0.115 0.885 48 H 0.078 0.922 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 23.247 -13.489 -2.948 27.038 hybrid contribution 0.299 0.008 -0.510 0.591 sum 23.545 -13.481 -3.458 27.351 Atomic orbital electron populations 1.69914 1.06299 1.26954 1.51143 1.24972 0.94703 0.99233 0.94338 0.86799 0.80655 0.83387 0.78748 1.20247 1.21449 1.18499 1.21115 0.89300 0.94520 1.51269 0.90984 1.19368 0.96358 0.90253 0.97611 1.21681 0.88277 1.03122 1.02996 1.21526 0.91528 0.82417 0.74265 1.90638 1.70679 1.31029 1.49179 1.48298 1.06298 1.06220 1.75174 1.21720 0.97727 0.84161 0.98088 1.21909 0.95636 1.00300 0.99439 1.21520 0.95437 0.95954 1.02075 1.21741 0.93721 0.96809 1.00513 0.90277 1.22158 0.93615 0.89280 1.01340 1.62247 1.03147 1.20076 1.40483 1.22775 0.88731 0.98269 1.01150 1.22641 0.96873 0.91429 0.90461 1.87974 1.20736 1.78355 1.43576 1.22701 0.80382 0.95550 1.02806 1.22923 1.01012 0.95787 0.91856 1.21470 0.79874 1.02011 0.96548 0.92736 0.95850 0.96345 0.89788 0.89731 0.88895 0.91686 0.91359 0.90620 0.91944 0.91646 0.94488 0.90250 0.94106 0.89691 0.88646 0.92142 0.91795 0.88336 0.94155 0.88520 0.92236 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.72 27.47 -169.99 -4.67 18.05 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.12 -2.37 3.99 -27.88 -0.11 -2.49 16 11 C 0.51 9.54 7.70 -10.99 -0.08 9.46 16 12 O -0.54 -12.03 15.39 5.56 0.09 -11.94 16 13 N -0.62 -8.78 2.97 -172.73 -0.51 -9.30 16 14 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 15 C -0.13 -1.17 6.08 -26.61 -0.16 -1.33 16 16 C -0.11 -0.88 5.17 -26.69 -0.14 -1.02 16 17 C -0.11 -1.03 1.82 -90.48 -0.16 -1.20 16 18 H 0.08 0.86 5.95 -51.93 -0.31 0.55 16 19 C 0.06 0.54 4.67 -3.82 -0.02 0.52 16 20 N -0.53 -5.21 4.45 -234.30 -1.04 -6.25 16 21 C 0.02 0.16 5.62 -3.71 -0.02 0.14 16 22 C 0.06 0.55 7.01 37.21 0.26 0.81 16 23 O -0.39 -4.41 10.83 -35.23 -0.38 -4.79 16 24 C 0.06 0.68 7.01 37.21 0.26 0.94 16 25 C 0.01 0.13 4.82 -3.71 -0.02 0.11 16 26 C 0.12 1.53 5.38 -3.68 -0.02 1.51 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 29 H 0.02 0.48 7.53 -51.93 -0.39 0.08 16 30 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 31 H 0.08 1.55 7.94 -51.93 -0.41 1.13 16 32 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 1.13 5.43 -51.93 -0.28 0.85 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.10 1.49 6.27 -51.93 -0.33 1.16 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -34.05 372.15 -9.62 -43.67 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -8.72 Total: -2.82 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -0.76 Total: -4.90 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.78 Total: -42.88 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.30 Total: -16.74 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.67 Total: 18.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.05 -9.62 -43.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330908363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.003 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds