Wall clock time and date at job start Fri Apr 10 2020 22:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00328 * 2 1 4 4 H 1.48500 * 109.47454 * 269.99729 * 3 2 1 5 5 H 1.48501 * 109.47157 * 30.00057 * 3 2 1 6 6 H 1.48505 * 109.47131 * 150.00146 * 3 2 1 7 7 C 1.37884 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99738 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99870 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46934 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46934 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00298 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99796 * 179.97438 * 11 10 9 14 14 C 1.46929 * 120.63170 * 359.97438 * 13 11 10 15 15 C 1.53190 * 108.77429 * 126.43648 * 14 13 11 16 16 C 1.53043 * 109.31675 * 54.63268 * 15 14 13 17 17 C 1.53034 * 109.53665 * 298.63880 * 16 15 14 18 18 H 1.08994 * 109.50162 * 301.37196 * 17 16 15 19 19 C 1.53007 * 109.49636 * 181.31078 * 17 16 15 20 20 N 1.46900 * 109.47281 * 175.06573 * 19 17 16 21 21 C 1.47014 * 111.00019 * 190.00296 * 20 19 17 22 22 C 1.53096 * 109.25675 * 182.39166 * 21 20 19 23 23 O 1.43015 * 109.25724 * 303.14825 * 22 21 20 24 24 C 1.43010 * 113.73980 * 58.67537 * 23 22 21 25 25 C 1.47017 * 110.99765 * 313.63672 * 20 19 17 26 26 C 1.46937 * 120.60424 * 180.02562 * 13 11 10 27 27 H 0.97004 * 119.99756 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47057 * 60.00175 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00031 * 9 7 2 30 30 H 1.08994 * 109.47243 * 59.99512 * 10 9 7 31 31 H 1.09005 * 109.46895 * 299.99868 * 10 9 7 32 32 H 1.08997 * 109.58573 * 6.64794 * 14 13 11 33 33 H 1.09002 * 109.58658 * 246.22396 * 14 13 11 34 34 H 1.09002 * 109.49955 * 294.68384 * 15 14 13 35 35 H 1.08996 * 109.52576 * 174.60593 * 15 14 13 36 36 H 1.08990 * 109.46281 * 178.61164 * 16 15 14 37 37 H 1.09005 * 109.45418 * 58.65618 * 16 15 14 38 38 H 1.09005 * 109.47084 * 55.06358 * 19 17 16 39 39 H 1.09000 * 109.47004 * 295.06585 * 19 17 16 40 40 H 1.09004 * 109.50706 * 62.45483 * 21 20 19 41 41 H 1.08995 * 109.54210 * 302.34427 * 21 20 19 42 42 H 1.08997 * 109.50375 * 183.21864 * 22 21 20 43 43 H 1.08996 * 109.54637 * 63.10402 * 22 21 20 44 44 H 1.08993 * 109.51045 * 61.26026 * 24 23 22 45 45 H 1.08999 * 109.51323 * 181.39624 * 24 23 22 46 46 H 1.09006 * 109.50736 * 297.54404 * 25 20 19 47 47 H 1.08995 * 109.50709 * 57.63009 * 25 20 19 48 48 H 1.08998 * 109.56375 * 113.76505 * 26 13 11 49 49 H 1.08998 * 109.61669 * 353.33262 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4643 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6368 0.0010 11 6 5.5283 -2.6369 0.0009 12 8 6.1348 -1.5866 0.0005 13 7 6.2021 -3.8041 0.0014 14 6 5.4814 -5.0845 0.0024 15 6 5.9898 -5.9374 -1.1642 16 6 7.5112 -6.0724 -1.0673 17 6 8.1550 -4.6875 -1.1649 18 1 7.8719 -4.2202 -2.1080 19 6 9.6774 -4.8265 -1.1007 20 7 10.2985 -3.5122 -1.3126 21 6 11.7518 -3.6394 -1.4944 22 6 12.3649 -2.2455 -1.6519 23 8 11.7385 -1.5760 -2.7495 24 6 10.3228 -1.4341 -2.6053 25 6 9.6889 -2.8199 -2.4574 26 6 7.6714 -3.8198 0.0019 27 1 -0.4850 0.8401 0.0004 28 1 3.8744 -0.6803 0.8911 29 1 3.8751 -0.6806 -0.8888 30 1 3.6582 -3.1504 -0.8891 31 1 3.6576 -3.1508 0.8908 32 1 4.4133 -4.9027 -0.1161 33 1 5.6634 -5.6055 0.9424 34 1 5.7264 -5.4582 -2.1071 35 1 5.5332 -6.9261 -1.1187 36 1 7.8727 -6.6992 -1.8822 37 1 7.7751 -6.5292 -0.1134 38 1 10.0123 -5.5159 -1.8759 39 1 9.9662 -5.2114 -0.1227 40 1 11.9566 -4.2302 -2.3873 41 1 12.1863 -4.1319 -0.6246 42 1 13.4338 -2.3376 -1.8440 43 1 12.2073 -1.6724 -0.7383 44 1 10.1051 -0.8380 -1.7192 45 1 9.9148 -0.9395 -3.4867 46 1 9.8607 -3.3976 -3.3657 47 1 8.6170 -2.7146 -2.2904 48 1 8.0316 -4.2374 0.9420 49 1 8.0482 -2.8040 -0.1174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330908363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:08 Heat of formation + Delta-G solvation = -108.220217 kcal Electronic energy + Delta-G solvation = -26939.135958 eV Core-core repulsion = 23285.700730 eV Total energy + Delta-G solvation = -3653.435228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40297 -40.51685 -38.75771 -36.82080 -35.58991 -34.12429 -33.23366 -32.52669 -31.96600 -29.14548 -28.15141 -26.10199 -25.51732 -25.10541 -23.08361 -22.86401 -21.60859 -20.77208 -19.86301 -19.08472 -17.82263 -17.63256 -17.14262 -16.90960 -16.63531 -16.28211 -16.08070 -16.05760 -15.83834 -15.30830 -15.24834 -14.94843 -14.80819 -14.65281 -14.14427 -14.03463 -13.71774 -13.49718 -13.37184 -13.13852 -12.92121 -12.86536 -12.53856 -12.39140 -12.10026 -11.98326 -11.91812 -11.79870 -11.75960 -11.69173 -11.42486 -11.40240 -11.32284 -10.78902 -10.72078 -10.61780 -9.59779 -9.36243 -8.32493 -6.35076 1.31914 1.33983 1.49369 1.67546 2.08060 2.34192 2.71406 2.90977 3.03205 3.62738 3.69988 3.82003 3.89908 3.97240 4.05110 4.09608 4.12095 4.14008 4.27434 4.34198 4.34874 4.41318 4.44739 4.56849 4.61794 4.65599 4.67346 4.72410 4.73735 4.76418 4.86018 4.90633 4.95951 4.97873 5.00888 5.13894 5.15760 5.25616 5.31870 5.42519 5.45700 5.59810 5.66170 5.90374 5.99421 6.12346 6.22615 6.43385 6.70890 7.25523 7.30329 8.83171 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.003456 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.594613 B = 8100.711400 C = 9636.884130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.015 3.985 3 Si 0.936 3.064 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.007 3.993 10 C -0.113 4.113 11 C 0.511 3.489 12 O -0.586 6.586 13 N -0.613 5.613 14 C 0.096 3.904 15 C -0.130 4.130 16 C -0.106 4.106 17 C -0.100 4.100 18 H 0.062 0.938 19 C 0.069 3.931 20 N -0.549 5.549 21 C 0.022 3.978 22 C 0.056 3.944 23 O -0.404 6.404 24 C 0.062 3.938 25 C 0.021 3.979 26 C 0.124 3.876 27 H 0.268 0.732 28 H 0.008 0.992 29 H 0.006 0.994 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.043 0.957 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.103 0.897 46 H 0.043 0.957 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.979 -16.767 -3.136 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.069 0.931 9 C -0.031 4.031 10 C -0.153 4.153 11 C 0.301 3.699 12 O -0.467 6.467 13 N -0.346 5.346 14 C -0.025 4.025 15 C -0.168 4.168 16 C -0.144 4.144 17 C -0.119 4.119 18 H 0.080 0.920 19 C -0.059 4.059 20 N -0.275 5.275 21 C -0.106 4.106 22 C -0.020 4.020 23 O -0.323 6.323 24 C -0.015 4.015 25 C -0.107 4.107 26 C 0.002 3.998 27 H 0.077 0.923 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.062 0.938 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.121 0.879 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 25.171 -15.768 -2.865 29.840 hybrid contribution -0.295 0.599 -0.509 0.839 sum 24.876 -15.169 -3.373 29.331 Atomic orbital electron populations 1.70018 1.07706 1.28091 1.52502 1.25776 0.95480 1.02741 0.94272 0.85859 0.79214 0.79667 0.79163 1.19342 1.20205 1.18804 1.21414 0.91119 0.93741 1.50297 0.93053 1.19206 0.94012 0.93707 0.96160 1.21487 0.89549 0.99753 1.04464 1.21227 0.91013 0.83178 0.74501 1.90620 1.71222 1.32964 1.51879 1.48293 1.07291 1.06102 1.72918 1.22056 0.97301 0.82829 1.00358 1.21898 0.96461 1.00876 0.97577 1.21517 0.94477 0.94769 1.03665 1.21650 0.94838 0.97247 0.98176 0.91955 1.22166 0.92400 0.88809 1.02505 1.62261 1.04165 1.21002 1.40075 1.22806 0.87687 0.97918 1.02151 1.22862 0.98028 0.91579 0.89557 1.87948 1.20687 1.78908 1.44754 1.22672 0.80678 0.95833 1.02305 1.22745 0.99946 0.95677 0.92364 1.21555 0.78474 1.01159 0.98602 0.92347 0.97402 0.97530 0.88328 0.88274 0.89348 0.89393 0.92714 0.88020 0.90235 0.90041 0.93173 0.88863 0.93844 0.87689 0.86380 0.92772 0.93406 0.87893 0.93920 0.90276 0.90762 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.34 13.96 21.45 0.30 -59.04 16 2 C 0.02 0.91 5.47 84.66 0.46 1.37 16 3 Si 0.94 47.44 27.47 68.60 1.88 49.32 16 4 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.26 -13.39 6.54 99.48 0.65 -12.74 16 7 C -0.53 -30.78 9.66 25.60 0.25 -30.54 16 8 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 9 C 0.01 0.36 3.33 29.85 0.10 0.46 16 10 C -0.11 -4.42 3.99 29.85 0.12 -4.30 16 11 C 0.51 19.09 7.70 87.66 0.67 19.76 16 12 O -0.59 -26.92 15.39 -3.02 -0.05 -26.96 16 13 N -0.61 -16.56 2.97 -818.80 -2.43 -19.00 16 14 C 0.10 1.82 6.34 86.36 0.55 2.37 16 15 C -0.13 -1.84 6.08 30.67 0.19 -1.66 16 16 C -0.11 -1.28 5.17 30.62 0.16 -1.12 16 17 C -0.10 -1.70 1.82 -10.70 -0.02 -1.72 16 18 H 0.06 1.30 5.95 -2.39 -0.01 1.29 16 19 C 0.07 0.97 4.67 86.31 0.40 1.38 16 20 N -0.55 -9.99 4.45 -895.17 -3.98 -13.97 16 21 C 0.02 0.32 5.62 86.31 0.49 0.80 16 22 C 0.06 0.91 7.01 72.01 0.50 1.42 16 23 O -0.40 -9.06 10.83 -148.98 -1.61 -10.67 16 24 C 0.06 1.39 7.01 72.02 0.50 1.89 16 25 C 0.02 0.44 4.82 86.32 0.42 0.85 16 26 C 0.12 2.94 5.38 86.38 0.46 3.40 16 27 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 28 H 0.01 0.41 7.16 -2.39 -0.02 0.39 16 29 H 0.01 0.34 7.53 -2.39 -0.02 0.32 16 30 H 0.10 3.53 7.69 -2.39 -0.02 3.51 16 31 H 0.10 3.56 7.94 -2.38 -0.02 3.54 16 32 H 0.09 1.77 5.93 -2.39 -0.01 1.76 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.05 0.61 8.08 -2.38 -0.02 0.59 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 45 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.08 1.93 5.43 -2.39 -0.01 1.92 16 48 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.07 2.07 6.27 -2.39 -0.01 2.05 16 Total: -1.00 -75.27 372.15 0.22 -75.05 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.85 Total: 10.91 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.26 Total: -5.63 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -6.11 Total: -92.01 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.66 Total: -37.64 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.88 Total: 49.32 kcal Total: -75.27 0.22 -75.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330908363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.168 kcal (2) G-P(sol) polarization free energy of solvation -75.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds