Wall clock time and date at job start Fri Apr 10 2020 22:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00158 * 2 1 4 4 H 1.48506 * 109.46976 * 274.06321 * 3 2 1 5 5 H 1.48503 * 109.47549 * 34.05994 * 3 2 1 6 6 H 1.48497 * 109.47535 * 154.06749 * 3 2 1 7 7 C 1.38815 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00320 * 197.52497 * 7 2 1 9 9 N 1.36944 * 119.99689 * 17.53144 * 7 2 1 10 10 C 1.46926 * 120.62594 * 207.99401 * 9 7 2 11 11 C 1.53186 * 108.77296 * 233.62938 * 10 9 7 12 12 C 1.53038 * 109.31667 * 305.36606 * 11 10 9 13 13 C 1.52994 * 109.46497 * 181.38579 * 12 11 10 14 14 N 1.46502 * 109.47591 * 174.97191 * 13 12 11 15 15 C 1.34779 * 120.00211 * 180.27575 * 14 13 12 16 16 O 1.21277 * 119.99585 * 359.72350 * 15 14 13 17 17 C 1.50699 * 119.99963 * 179.72783 * 15 14 13 18 18 C 1.52993 * 109.47298 * 179.97438 * 17 15 14 19 19 O 1.42901 * 110.01519 * 64.29892 * 18 17 15 20 20 C 1.54265 * 110.03267 * 302.90858 * 18 17 15 21 21 C 1.54962 * 104.16179 * 217.13517 * 20 18 17 22 22 C 1.54889 * 102.77843 * 37.88486 * 21 20 18 23 23 C 1.53874 * 110.03475 * 185.68780 * 18 17 15 24 24 C 1.53042 * 109.52451 * 61.37336 * 12 11 10 25 25 C 1.46918 * 120.62985 * 28.01704 * 9 7 2 26 26 H 0.97000 * 120.00186 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.58409 * 113.84702 * 10 9 7 28 28 H 1.09000 * 109.70494 * 353.48874 * 10 9 7 29 29 H 1.09004 * 109.49790 * 185.41349 * 11 10 9 30 30 H 1.09003 * 109.52922 * 65.33769 * 11 10 9 31 31 H 1.09005 * 109.46137 * 301.36210 * 12 11 10 32 32 H 1.09007 * 109.46989 * 54.97474 * 13 12 11 33 33 H 1.09002 * 109.47144 * 294.97639 * 13 12 11 34 34 H 0.96999 * 119.99448 * 0.02562 * 14 13 12 35 35 H 1.08999 * 109.46852 * 300.00163 * 17 15 14 36 36 H 1.09003 * 109.46796 * 59.99881 * 17 15 14 37 37 H 0.96705 * 113.99744 * 300.70007 * 19 18 17 38 38 H 1.08999 * 110.48908 * 335.78171 * 20 18 17 39 39 H 1.09002 * 110.48639 * 98.42431 * 20 18 17 40 40 H 1.09005 * 110.71624 * 279.57419 * 21 20 18 41 41 H 1.08995 * 110.76914 * 156.22330 * 21 20 18 42 42 H 1.08999 * 110.48752 * 203.40507 * 22 21 20 43 43 H 1.09004 * 110.48255 * 80.76083 * 22 21 20 44 44 H 1.09001 * 110.03426 * 238.56640 * 23 18 17 45 45 H 1.08997 * 110.02889 * 0.02562 * 23 18 17 46 46 H 1.08997 * 109.50195 * 58.58307 * 24 12 11 47 47 H 1.09006 * 109.50019 * 178.67894 * 24 12 11 48 48 H 1.09000 * 109.58815 * 246.15073 * 25 9 7 49 49 H 1.08994 * 109.59179 * 6.43910 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4118 2.0959 -1.3966 5 1 1.4933 2.6264 0.7841 6 1 3.5881 1.4169 0.6122 7 6 2.0102 -1.2022 0.0005 8 1 3.0526 -1.2238 0.2822 9 7 1.3731 -2.3607 -0.3562 10 6 1.8144 -3.6542 0.1831 11 6 2.0773 -4.6111 -0.9839 12 6 0.8282 -4.6905 -1.8646 13 6 1.0750 -5.6719 -3.0121 14 7 -0.1580 -5.8395 -3.7852 15 6 -0.1796 -6.6678 -4.8482 16 8 0.8231 -7.2705 -5.1677 17 6 -1.4497 -6.8449 -5.6398 18 6 -1.2042 -7.8300 -6.7843 19 8 -0.8934 -9.1222 -6.2591 20 6 -0.0478 -7.3290 -7.6739 21 6 -0.4795 -7.7166 -9.1108 22 6 -2.0066 -7.4582 -9.0912 23 6 -2.4491 -7.9126 -7.6849 24 6 0.5167 -3.3055 -2.4364 25 6 0.2358 -2.3338 -1.2858 26 1 -0.4850 0.8400 -0.0004 27 1 1.0366 -4.0667 0.8257 28 1 2.7303 -3.5193 0.7585 29 1 2.3124 -5.6022 -0.5958 30 1 2.9162 -4.2434 -1.5747 31 1 -0.0160 -5.0351 -1.2673 32 1 1.3831 -6.6355 -2.6061 33 1 1.8603 -5.2829 -3.6603 34 1 -0.9599 -5.3571 -3.5298 35 1 -2.2329 -7.2322 -4.9881 36 1 -1.7599 -5.8833 -6.0488 37 1 -0.1110 -9.1381 -5.6911 38 1 0.0598 -6.2479 -7.5867 39 1 0.8833 -7.8288 -7.4066 40 1 -0.2682 -8.7679 -9.3066 41 1 0.0106 -7.0794 -9.8468 42 1 -2.5039 -8.0520 -9.8581 43 1 -2.2159 -6.3979 -9.2329 44 1 -2.8157 -8.9385 -7.7222 45 1 -3.2280 -7.2505 -7.3068 46 1 1.3702 -2.9496 -3.0133 47 1 -0.3592 -3.3672 -3.0823 48 1 -0.6708 -2.6387 -0.7630 49 1 0.1091 -1.3253 -1.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330930927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:12 Heat of formation + Delta-G solvation = -114.318671 kcal Electronic energy + Delta-G solvation = -26443.882537 eV Core-core repulsion = 22790.182860 eV Total energy + Delta-G solvation = -3653.699677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39912 -39.78778 -38.93253 -36.37913 -35.68703 -34.53282 -32.66565 -31.65021 -31.49032 -29.67002 -28.51532 -26.69287 -25.37081 -23.85221 -22.67464 -21.90399 -21.55418 -20.75149 -20.57637 -18.74721 -18.10434 -17.59490 -16.89029 -16.83285 -16.67683 -16.24965 -15.94860 -15.67321 -15.30837 -15.16716 -14.78746 -14.63864 -14.37392 -14.01440 -13.90056 -13.77481 -13.56844 -13.31025 -13.07666 -12.91282 -12.80802 -12.58404 -12.36147 -12.28426 -12.03091 -11.98273 -11.94951 -11.84663 -11.62047 -11.58541 -11.44917 -11.23593 -11.12865 -10.82522 -10.70767 -10.53786 -10.04502 -8.67471 -7.88164 -5.32555 1.45491 1.47195 1.55934 1.63074 2.22588 2.50660 3.25901 3.27320 3.56733 3.65501 3.71118 3.84092 3.86127 3.95456 4.02186 4.10098 4.26596 4.35785 4.52840 4.54117 4.55004 4.57953 4.69246 4.72133 4.73879 4.79751 4.83540 4.91660 4.92781 5.03859 5.04765 5.05878 5.16428 5.17808 5.21012 5.25338 5.29769 5.38668 5.41705 5.46709 5.48173 5.56380 5.66426 5.79461 6.39583 6.55122 6.76239 7.15750 7.24989 7.87867 8.38156 9.17845 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024528 B = 0.002519 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.283832 B =11111.907533 C =11628.201939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.613 5.613 10 C 0.140 3.860 11 C -0.115 4.115 12 C -0.079 4.079 13 C 0.137 3.863 14 N -0.717 5.717 15 C 0.510 3.490 16 O -0.577 6.577 17 C -0.165 4.165 18 C 0.141 3.859 19 O -0.575 6.575 20 C -0.139 4.139 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.119 4.119 25 C 0.176 3.824 26 H 0.250 0.750 27 H 0.016 0.984 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.412 0.588 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.381 0.619 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.000 1.000 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 -15.472 -15.082 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.015 3.985 11 C -0.155 4.155 12 C -0.098 4.098 13 C 0.013 3.987 14 N -0.369 5.369 15 C 0.298 3.702 16 O -0.458 6.458 17 C -0.204 4.204 18 C 0.100 3.900 19 O -0.384 6.384 20 C -0.177 4.177 21 C -0.165 4.165 22 C -0.158 4.158 23 C -0.150 4.150 24 C -0.158 4.158 25 C 0.050 3.950 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.249 0.751 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.018 0.982 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.488 -15.920 -15.598 22.953 hybrid contribution 0.674 1.611 0.916 1.972 sum -4.814 -14.309 -14.682 21.059 Atomic orbital electron populations 1.70174 1.06517 1.25781 1.55455 1.25748 0.96058 1.01343 1.01411 0.85308 0.78250 0.79856 0.77382 1.21333 1.22095 1.19450 1.19512 0.92953 0.86303 1.40496 0.91916 1.44350 1.36666 1.02212 1.50418 1.21046 0.97253 0.85964 0.94249 1.21852 0.96935 0.99552 0.97133 1.21161 0.99026 0.94132 0.95483 1.21266 0.86554 0.98732 0.92187 1.46060 1.14806 1.46102 1.29919 1.21108 0.90644 0.78099 0.80319 1.90632 1.37147 1.48816 1.69247 1.22597 0.95749 1.03587 0.98496 1.21718 0.95129 0.81883 0.91274 1.86417 1.51826 1.30801 1.69403 1.22980 0.98264 1.00703 0.95712 1.22535 0.96664 1.01133 0.96128 1.22378 0.95046 1.02114 0.96249 1.22218 0.95445 1.02971 0.94406 1.22031 1.00663 0.95255 0.97898 1.20599 0.87813 0.97646 0.88929 0.94111 0.96582 0.93061 0.89867 0.92800 0.90541 0.91377 0.92846 0.75124 0.86412 0.85653 0.76847 0.91737 0.92295 0.92140 0.90956 0.90436 0.90259 0.91030 0.88706 0.93777 0.90937 0.98232 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.47 11.22 21.65 0.24 -54.23 16 2 C -0.05 -2.78 4.90 84.86 0.42 -2.37 16 3 Si 0.96 44.65 29.59 68.60 2.03 46.68 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.26 -14.36 9.58 84.03 0.81 -13.56 16 8 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 9 N -0.61 -30.11 2.99 -699.12 -2.09 -32.20 16 10 C 0.14 5.59 6.51 86.36 0.56 6.15 16 11 C -0.12 -3.55 5.36 30.67 0.16 -3.39 16 12 C -0.08 -2.22 2.19 -10.77 -0.02 -2.24 16 13 C 0.14 3.32 5.06 86.38 0.44 3.75 16 14 N -0.72 -14.57 5.27 -463.06 -2.44 -17.01 16 15 C 0.51 10.88 7.30 87.66 0.64 11.52 16 16 O -0.58 -15.97 12.51 11.04 0.14 -15.83 16 17 C -0.16 -2.49 4.63 29.85 0.14 -2.35 16 18 C 0.14 2.56 0.98 -10.07 -0.01 2.55 16 19 O -0.58 -13.19 12.89 -134.92 -1.74 -14.93 16 20 C -0.14 -2.77 4.65 31.69 0.15 -2.62 16 21 C -0.13 -2.07 6.91 31.91 0.22 -1.84 16 22 C -0.12 -1.52 6.83 31.67 0.22 -1.31 16 23 C -0.11 -1.59 6.27 31.32 0.20 -1.40 16 24 C -0.12 -4.02 5.25 30.67 0.16 -3.86 16 25 C 0.18 8.06 5.31 86.37 0.46 8.52 16 26 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 2.03 7.94 -2.39 -0.02 2.01 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.41 6.79 7.65 -92.71 -0.71 6.08 16 35 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.38 8.90 6.96 -74.05 -0.52 8.38 16 38 H 0.06 1.29 7.79 -2.39 -0.02 1.27 16 39 H 0.06 1.46 7.18 -2.39 -0.02 1.44 16 40 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 1.13 7.95 -2.39 -0.02 1.12 16 45 H 0.09 0.94 7.67 -2.39 -0.02 0.92 16 46 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 2.03 7.15 -2.38 -0.02 2.01 16 48 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 49 H 0.05 2.64 6.06 -2.39 -0.01 2.63 16 Total: -1.00 -66.84 374.06 0.38 -66.46 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.29 Total: 23.47 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 4.53 Total: -2.43 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -4.29 Total: -103.43 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -1.60 Total: -30.75 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -66.84 0.38 -66.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330930927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.858 kcal (2) G-P(sol) polarization free energy of solvation -66.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds