Wall clock time and date at job start Fri Apr 10 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48503 * 109.47070 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47565 * 119.99829 * 3 2 1 6 6 H 1.48498 * 109.47135 * 239.99872 * 3 2 1 7 7 C 1.38806 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00499 * 162.64517 * 7 2 1 9 9 N 1.36943 * 119.99964 * 342.64790 * 7 2 1 10 10 C 1.46924 * 120.62995 * 332.32530 * 9 7 2 11 11 C 1.53197 * 108.77415 * 233.58592 * 10 9 7 12 12 C 1.53042 * 109.31056 * 305.36136 * 11 10 9 13 13 C 1.53041 * 109.53755 * 61.36512 * 12 11 10 14 14 H 1.08999 * 109.49504 * 58.61737 * 13 12 11 15 15 C 1.52998 * 109.49744 * 178.67892 * 13 12 11 16 16 N 1.46505 * 109.46933 * 185.00086 * 15 13 12 17 17 C 1.34778 * 119.99545 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00307 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99739 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.63291 * 60.00005 * 19 17 16 21 21 C 1.50280 * 109.63337 * 180.39791 * 19 17 16 22 22 C 1.54365 * 113.09553 * 211.60725 * 21 19 17 23 23 C 1.54347 * 111.52887 * 319.30515 * 22 21 19 24 24 O 1.39965 * 112.57105 * 319.15849 * 23 22 21 25 25 C 1.44223 * 112.36900 * 97.12066 * 24 23 22 26 26 C 1.45995 * 112.10225 * 277.40577 * 25 24 23 27 27 C 1.46929 * 120.63170 * 152.04076 * 9 7 2 28 28 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58594 * 353.36665 * 10 9 7 30 30 H 1.08997 * 109.59075 * 113.79595 * 10 9 7 31 31 H 1.08998 * 109.49525 * 65.31225 * 11 10 9 32 32 H 1.09000 * 109.49314 * 185.41423 * 11 10 9 33 33 H 1.08990 * 109.45655 * 181.38513 * 12 11 10 34 34 H 1.08995 * 109.45784 * 301.36057 * 12 11 10 35 35 H 1.08993 * 109.47213 * 305.00350 * 15 13 12 36 36 H 1.09004 * 109.46599 * 65.00342 * 15 13 12 37 37 H 0.96997 * 120.00358 * 359.97438 * 16 15 13 38 38 H 1.09002 * 108.79074 * 332.68253 * 21 19 17 39 39 H 1.09007 * 108.78800 * 90.88613 * 21 19 17 40 40 H 1.08997 * 109.16669 * 198.69373 * 22 21 19 41 41 H 1.08996 * 108.86362 * 79.72215 * 22 21 19 42 42 H 1.08999 * 108.86594 * 198.35783 * 23 22 21 43 43 H 1.09000 * 108.86261 * 79.95137 * 23 22 21 44 44 H 1.09002 * 108.95634 * 156.73161 * 25 24 23 45 45 H 1.08992 * 108.88706 * 38.03650 * 25 24 23 46 46 H 1.08997 * 109.03127 * 299.48550 * 26 25 24 47 47 H 1.09008 * 109.02635 * 180.64613 * 26 25 24 48 48 H 1.09001 * 109.58656 * 246.20481 * 27 9 7 49 49 H 1.09002 * 109.58616 * 6.62798 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0534 -1.2235 -0.2784 9 7 1.3723 -2.3609 0.3548 10 6 0.2277 -2.3340 1.2755 11 6 0.5004 -3.3037 2.4297 12 6 0.8182 -4.6891 1.8624 13 6 2.0740 -4.6097 0.9912 14 1 2.9079 -4.2401 1.5879 15 6 2.4097 -6.0013 0.4512 16 7 3.6761 -5.9475 -0.2833 17 6 4.1733 -7.0639 -0.8516 18 8 3.5726 -8.1130 -0.7546 19 6 5.4764 -7.0089 -1.6067 20 1 6.2725 -6.6783 -0.9397 21 6 5.8044 -8.3720 -2.1478 22 6 7.3221 -8.6425 -2.2278 23 6 8.0933 -7.4010 -2.7239 24 8 7.4321 -6.7379 -3.7641 25 6 6.6561 -5.6166 -3.2946 26 6 5.3491 -6.0261 -2.7891 27 6 1.8156 -3.6542 -0.1836 28 1 -0.4851 0.8400 -0.0004 29 1 0.0985 -1.3254 1.6684 30 1 -0.6745 -2.6405 0.7462 31 1 1.3490 -2.9458 3.0127 32 1 -0.3805 -3.3655 3.0687 33 1 0.9885 -5.3868 2.6822 34 1 -0.0208 -5.0355 1.2590 35 1 2.5008 -6.7010 1.2819 36 1 1.6154 -6.3327 -0.2177 37 1 4.1564 -5.1085 -0.3612 38 1 5.3459 -9.1242 -1.5058 39 1 5.3822 -8.4634 -3.1486 40 1 7.5022 -9.4711 -2.9127 41 1 7.6843 -8.9146 -1.2365 42 1 9.0769 -7.7138 -3.0743 43 1 8.2217 -6.7098 -1.8908 44 1 6.5138 -4.9153 -4.1168 45 1 7.2044 -5.1180 -2.4954 46 1 4.7920 -6.5074 -3.5929 47 1 4.8027 -5.1424 -2.4595 48 1 1.0403 -4.0661 -0.8296 49 1 2.7344 -3.5170 -0.7538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333021551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:18 Heat of formation + Delta-G solvation = -82.160787 kcal Electronic energy + Delta-G solvation = -26864.514884 eV Core-core repulsion = 23212.209677 eV Total energy + Delta-G solvation = -3652.305207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55005 -39.01136 -37.79881 -34.95124 -34.64301 -33.18443 -32.74097 -30.49652 -30.37101 -27.84511 -26.20108 -25.34381 -24.79427 -22.30703 -21.99246 -21.28752 -20.79196 -19.79062 -19.03720 -17.61664 -16.85136 -16.69180 -15.95698 -15.70764 -15.31806 -15.27718 -14.88177 -14.70386 -14.09096 -13.76276 -13.64776 -13.47059 -13.35578 -13.16956 -12.82207 -12.66601 -12.34594 -12.21165 -12.15157 -11.70364 -11.35217 -11.32410 -11.05532 -10.98699 -10.89059 -10.73698 -10.58032 -10.54117 -10.28843 -10.21905 -10.05596 -9.95375 -9.71351 -9.48980 -9.46269 -8.94122 -8.50409 -6.72258 -5.83432 -3.26523 2.64632 3.24015 3.33762 3.40524 3.40792 3.61307 4.36527 4.43842 4.56537 4.60804 4.74467 4.84420 4.91551 5.05692 5.15566 5.20010 5.26175 5.27568 5.37955 5.40550 5.43571 5.46017 5.58003 5.60240 5.76975 5.80085 5.87058 5.90620 5.94036 5.98374 6.02005 6.15731 6.20465 6.29563 6.33667 6.50019 6.54985 6.66987 6.73588 6.82361 6.92174 6.99164 7.36045 7.57092 7.63265 7.73403 8.26668 8.39752 9.15970 9.79630 10.36525 11.24684 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.003419 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.508072 B = 8188.525471 C = 9746.951716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.126 3.874 16 N -0.722 5.722 17 C 0.517 3.483 18 O -0.545 6.545 19 C -0.105 4.105 20 H 0.095 0.905 21 C -0.110 4.110 22 C -0.145 4.145 23 C 0.056 3.944 24 O -0.370 6.370 25 C 0.060 3.940 26 C -0.146 4.146 27 C 0.155 3.845 28 H 0.255 0.745 29 H 0.087 0.913 30 H 0.017 0.983 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.402 0.598 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.019 0.981 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.590 -13.073 -1.478 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.374 5.374 17 C 0.303 3.697 18 O -0.422 6.422 19 C -0.126 4.126 20 H 0.113 0.887 21 C -0.148 4.148 22 C -0.183 4.183 23 C -0.021 4.021 24 O -0.288 6.288 25 C -0.016 4.016 26 C -0.184 4.184 27 C 0.028 3.972 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.237 0.763 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.037 0.963 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.027 -13.701 -1.615 18.302 hybrid contribution 0.519 1.363 0.315 1.492 sum 12.546 -12.338 -1.300 17.644 Atomic orbital electron populations 1.70025 1.05296 1.25686 1.53495 1.25033 0.95256 0.98420 1.00786 0.86385 0.78950 0.83405 0.78100 1.21608 1.21027 1.20881 1.19108 0.92602 0.84922 1.41962 0.91804 1.44048 1.35958 1.01223 1.50131 1.20805 0.88505 0.98425 0.87964 1.22171 1.00092 0.95931 0.99877 1.21339 0.96748 0.97737 0.97958 1.22033 0.98802 0.93576 0.99423 0.90908 1.21467 0.84846 0.97961 0.95465 1.46085 1.24809 1.11551 1.54909 1.20491 0.86815 0.83617 0.78826 1.90667 1.60935 1.30049 1.60584 1.21018 0.95792 0.98476 0.97317 0.88661 1.21188 0.95468 0.95707 1.02408 1.22579 0.95500 0.98841 1.01367 1.22360 0.95191 0.93958 0.90627 1.87791 1.64418 1.44580 1.31998 1.21577 0.91565 0.88291 1.00190 1.21238 0.99471 0.99983 0.97748 1.20974 0.97383 0.86853 0.92002 0.93521 0.89526 0.96460 0.92768 0.93179 0.93471 0.92488 0.92066 0.91617 0.76280 0.90045 0.91381 0.91250 0.91391 0.90455 0.93204 0.88772 0.92596 0.90142 0.89816 0.96340 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 11.19 55.49 0.62 -25.02 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.75 9.58 -15.06 -0.14 -6.90 16 8 H 0.06 1.62 7.89 -52.49 -0.41 1.21 16 9 N -0.59 -14.18 2.99 -172.05 -0.51 -14.69 16 10 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.10 -1.61 5.16 -26.69 -0.14 -1.75 16 13 C -0.12 -1.87 2.38 -90.28 -0.22 -2.09 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 15 C 0.13 1.80 5.07 -4.04 -0.02 1.78 16 16 N -0.72 -9.19 5.08 -60.29 -0.31 -9.50 16 17 C 0.52 6.89 7.14 -10.98 -0.08 6.81 16 18 O -0.54 -9.24 15.32 5.56 0.09 -9.16 16 19 C -0.10 -1.07 2.20 -92.46 -0.20 -1.27 16 20 H 0.10 0.82 7.10 -51.93 -0.37 0.46 16 21 C -0.11 -1.15 4.79 -27.37 -0.13 -1.28 16 22 C -0.14 -1.20 6.26 -25.31 -0.16 -1.36 16 23 C 0.06 0.45 6.09 37.86 0.23 0.68 16 24 O -0.37 -3.72 10.35 -32.84 -0.34 -4.06 16 25 C 0.06 0.51 6.12 33.84 0.21 0.72 16 26 C -0.15 -1.38 4.90 -29.39 -0.14 -1.52 16 27 C 0.15 3.01 5.63 -3.49 -0.02 2.99 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 4.53 7.11 -40.82 -0.29 4.24 16 38 H 0.08 0.99 6.73 -51.93 -0.35 0.64 16 39 H 0.07 0.77 7.35 -51.93 -0.38 0.39 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.35 6.54 -51.93 -0.34 0.01 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.41 7.34 -51.93 -0.38 0.02 16 46 H 0.08 0.84 7.55 -51.93 -0.39 0.44 16 47 H 0.08 0.77 7.20 -51.92 -0.37 0.39 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.05 0.91 7.16 -51.93 -0.37 0.54 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -30.83 369.60 -9.60 -40.43 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.61 Total: 2.44 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.08 Total: -2.03 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.20 Total: -49.21 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.25 Total: -13.22 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.83 -9.60 -40.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333021551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.730 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds