Wall clock time and date at job start Fri Apr 10 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48503 * 109.47070 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47565 * 119.99829 * 3 2 1 6 6 H 1.48498 * 109.47135 * 239.99872 * 3 2 1 7 7 C 1.38806 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00499 * 162.64517 * 7 2 1 9 9 N 1.36943 * 119.99964 * 342.64790 * 7 2 1 10 10 C 1.46924 * 120.62995 * 332.32530 * 9 7 2 11 11 C 1.53197 * 108.77415 * 233.58592 * 10 9 7 12 12 C 1.53042 * 109.31056 * 305.36136 * 11 10 9 13 13 C 1.53041 * 109.53755 * 61.36512 * 12 11 10 14 14 H 1.08999 * 109.49504 * 58.61737 * 13 12 11 15 15 C 1.52998 * 109.49744 * 178.67892 * 13 12 11 16 16 N 1.46505 * 109.46933 * 185.00086 * 15 13 12 17 17 C 1.34778 * 119.99545 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00307 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99739 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.63291 * 60.00005 * 19 17 16 21 21 C 1.50280 * 109.63337 * 180.39791 * 19 17 16 22 22 C 1.54365 * 113.09553 * 211.60725 * 21 19 17 23 23 C 1.54347 * 111.52887 * 319.30515 * 22 21 19 24 24 O 1.39965 * 112.57105 * 319.15849 * 23 22 21 25 25 C 1.44223 * 112.36900 * 97.12066 * 24 23 22 26 26 C 1.45995 * 112.10225 * 277.40577 * 25 24 23 27 27 C 1.46929 * 120.63170 * 152.04076 * 9 7 2 28 28 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58594 * 353.36665 * 10 9 7 30 30 H 1.08997 * 109.59075 * 113.79595 * 10 9 7 31 31 H 1.08998 * 109.49525 * 65.31225 * 11 10 9 32 32 H 1.09000 * 109.49314 * 185.41423 * 11 10 9 33 33 H 1.08990 * 109.45655 * 181.38513 * 12 11 10 34 34 H 1.08995 * 109.45784 * 301.36057 * 12 11 10 35 35 H 1.08993 * 109.47213 * 305.00350 * 15 13 12 36 36 H 1.09004 * 109.46599 * 65.00342 * 15 13 12 37 37 H 0.96997 * 120.00358 * 359.97438 * 16 15 13 38 38 H 1.09002 * 108.79074 * 332.68253 * 21 19 17 39 39 H 1.09007 * 108.78800 * 90.88613 * 21 19 17 40 40 H 1.08997 * 109.16669 * 198.69373 * 22 21 19 41 41 H 1.08996 * 108.86362 * 79.72215 * 22 21 19 42 42 H 1.08999 * 108.86594 * 198.35783 * 23 22 21 43 43 H 1.09000 * 108.86261 * 79.95137 * 23 22 21 44 44 H 1.09002 * 108.95634 * 156.73161 * 25 24 23 45 45 H 1.08992 * 108.88706 * 38.03650 * 25 24 23 46 46 H 1.08997 * 109.03127 * 299.48550 * 26 25 24 47 47 H 1.09008 * 109.02635 * 180.64613 * 26 25 24 48 48 H 1.09001 * 109.58656 * 246.20481 * 27 9 7 49 49 H 1.09002 * 109.58616 * 6.62798 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0534 -1.2235 -0.2784 9 7 1.3723 -2.3609 0.3548 10 6 0.2277 -2.3340 1.2755 11 6 0.5004 -3.3037 2.4297 12 6 0.8182 -4.6891 1.8624 13 6 2.0740 -4.6097 0.9912 14 1 2.9079 -4.2401 1.5879 15 6 2.4097 -6.0013 0.4512 16 7 3.6761 -5.9475 -0.2833 17 6 4.1733 -7.0639 -0.8516 18 8 3.5726 -8.1130 -0.7546 19 6 5.4764 -7.0089 -1.6067 20 1 6.2725 -6.6783 -0.9397 21 6 5.8044 -8.3720 -2.1478 22 6 7.3221 -8.6425 -2.2278 23 6 8.0933 -7.4010 -2.7239 24 8 7.4321 -6.7379 -3.7641 25 6 6.6561 -5.6166 -3.2946 26 6 5.3491 -6.0261 -2.7891 27 6 1.8156 -3.6542 -0.1836 28 1 -0.4851 0.8400 -0.0004 29 1 0.0985 -1.3254 1.6684 30 1 -0.6745 -2.6405 0.7462 31 1 1.3490 -2.9458 3.0127 32 1 -0.3805 -3.3655 3.0687 33 1 0.9885 -5.3868 2.6822 34 1 -0.0208 -5.0355 1.2590 35 1 2.5008 -6.7010 1.2819 36 1 1.6154 -6.3327 -0.2177 37 1 4.1564 -5.1085 -0.3612 38 1 5.3459 -9.1242 -1.5058 39 1 5.3822 -8.4634 -3.1486 40 1 7.5022 -9.4711 -2.9127 41 1 7.6843 -8.9146 -1.2365 42 1 9.0769 -7.7138 -3.0743 43 1 8.2217 -6.7098 -1.8908 44 1 6.5138 -4.9153 -4.1168 45 1 7.2044 -5.1180 -2.4954 46 1 4.7920 -6.5074 -3.5929 47 1 4.8027 -5.1424 -2.4595 48 1 1.0403 -4.0661 -0.8296 49 1 2.7344 -3.5170 -0.7538 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333021551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:17 Heat of formation + Delta-G solvation = -101.245140 kcal Electronic energy + Delta-G solvation = -26865.342444 eV Core-core repulsion = 23212.209677 eV Total energy + Delta-G solvation = -3653.132766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48606 -39.96518 -39.23837 -36.31861 -35.52229 -34.68873 -33.58575 -32.29666 -31.84544 -28.67101 -27.31514 -27.10135 -25.84736 -23.83734 -23.01188 -22.50554 -21.85271 -20.93805 -20.33989 -18.76681 -18.37600 -17.58082 -16.99730 -16.85212 -16.53742 -16.33070 -16.04276 -15.82475 -15.62382 -15.11165 -14.92913 -14.75342 -14.49274 -14.14242 -14.07772 -13.87893 -13.68173 -13.62847 -13.21732 -13.00890 -12.84129 -12.49789 -12.43120 -12.29260 -12.11561 -11.97221 -11.82725 -11.72993 -11.62362 -11.58120 -11.35889 -11.26100 -11.10419 -10.87517 -10.51175 -10.41435 -10.06779 -8.67222 -7.85453 -5.31286 1.48712 1.51239 1.57572 1.59815 2.20523 2.52567 2.99343 3.29488 3.57734 3.61144 3.69821 3.82451 3.99403 4.00963 4.06478 4.09257 4.16657 4.25225 4.40509 4.41839 4.51063 4.57598 4.61427 4.61828 4.70523 4.76268 4.77087 4.88180 4.90783 4.93638 5.01087 5.10421 5.12085 5.13966 5.20689 5.24537 5.25425 5.30989 5.33778 5.40115 5.50481 5.58175 5.67665 5.78600 6.37295 6.39840 6.54500 7.15928 7.22540 7.87497 8.39797 9.20679 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.003419 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.508072 B = 8188.525471 C = 9746.951716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.299 1.299 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.262 4.262 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.098 4.098 13 C -0.099 4.099 14 H 0.079 0.921 15 C 0.137 3.863 16 N -0.716 5.716 17 C 0.515 3.485 18 O -0.584 6.584 19 C -0.097 4.097 20 H 0.120 0.880 21 C -0.107 4.107 22 C -0.140 4.140 23 C 0.051 3.949 24 O -0.389 6.389 25 C 0.057 3.943 26 C -0.140 4.140 27 C 0.153 3.847 28 H 0.249 0.751 29 H 0.052 0.948 30 H -0.009 1.009 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.412 0.588 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.003 0.997 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.077 -13.488 -0.700 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.225 1.225 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.392 4.392 8 H 0.091 0.909 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.097 0.903 15 C 0.012 3.988 16 N -0.367 5.367 17 C 0.303 3.697 18 O -0.464 6.464 19 C -0.118 4.118 20 H 0.138 0.862 21 C -0.145 4.145 22 C -0.178 4.178 23 C -0.026 4.026 24 O -0.308 6.308 25 C -0.018 4.018 26 C -0.178 4.178 27 C 0.027 3.973 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.248 0.752 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.021 0.979 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.549 -14.127 -0.839 20.297 hybrid contribution -0.291 1.438 0.032 1.468 sum 14.258 -12.689 -0.807 19.104 Atomic orbital electron populations 1.70195 1.06846 1.25842 1.55464 1.25804 0.95938 1.01599 1.01380 0.85363 0.77549 0.79224 0.78454 1.22545 1.20286 1.19875 1.19534 0.93160 0.85912 1.40620 0.90881 1.44322 1.35877 1.02221 1.50766 1.20637 0.87675 0.97833 0.89225 1.21994 1.00926 0.95919 0.98010 1.21340 0.96613 0.96746 0.98897 1.21790 0.98998 0.93409 0.97775 0.90298 1.21256 0.85218 0.96726 0.95569 1.46021 1.24279 1.11974 1.54458 1.21024 0.87444 0.82908 0.78316 1.90655 1.62249 1.31501 1.62031 1.21014 0.94542 0.98611 0.97595 0.86212 1.21144 0.97066 0.95374 1.00940 1.22563 0.93697 0.99283 1.02284 1.22507 0.95373 0.93888 0.90854 1.87778 1.64695 1.45147 1.33197 1.21655 0.91000 0.88130 1.01049 1.21201 1.00153 0.99614 0.96875 1.21107 0.97109 0.85675 0.93368 0.94245 0.92979 0.99125 0.92724 0.91393 0.90250 0.92871 0.91138 0.92869 0.75169 0.92031 0.92976 0.91250 0.89989 0.89200 0.91645 0.88228 0.90623 0.91736 0.89431 0.97866 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.88 11.19 21.65 0.24 -54.63 16 2 C -0.05 -2.82 4.91 84.86 0.42 -2.41 16 3 Si 0.97 43.40 29.59 68.60 2.03 45.43 16 4 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.26 -13.75 9.58 84.03 0.81 -12.94 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 9 N -0.61 -29.22 2.99 -698.25 -2.09 -31.30 16 10 C 0.17 8.14 5.31 86.36 0.46 8.60 16 11 C -0.13 -4.61 6.08 30.67 0.19 -4.43 16 12 C -0.10 -2.94 5.16 30.62 0.16 -2.78 16 13 C -0.10 -2.95 2.38 -10.57 -0.03 -2.98 16 14 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 15 C 0.14 3.62 5.07 86.38 0.44 4.06 16 16 N -0.72 -16.77 5.08 -463.05 -2.35 -19.13 16 17 C 0.52 13.06 7.14 87.66 0.63 13.69 16 18 O -0.58 -19.56 15.32 -3.03 -0.05 -19.60 16 19 C -0.10 -1.79 2.20 -11.99 -0.03 -1.82 16 20 H 0.12 1.67 7.10 -2.39 -0.02 1.65 16 21 C -0.11 -2.16 4.79 30.18 0.14 -2.01 16 22 C -0.14 -2.06 6.26 31.51 0.20 -1.86 16 23 C 0.05 0.68 6.09 72.44 0.44 1.13 16 24 O -0.39 -7.04 10.35 -140.41 -1.45 -8.50 16 25 C 0.06 0.85 6.12 69.83 0.43 1.27 16 26 C -0.14 -2.42 4.90 28.87 0.14 -2.28 16 27 C 0.15 5.83 5.63 86.51 0.49 6.32 16 28 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.05 2.81 6.04 -2.39 -0.01 2.80 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.41 8.17 7.11 -92.71 -0.66 7.51 16 38 H 0.06 1.49 6.73 -2.39 -0.02 1.48 16 39 H 0.05 1.19 7.35 -2.38 -0.02 1.17 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 0.67 6.54 -2.39 -0.02 0.65 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 0.83 7.34 -2.39 -0.02 0.81 16 46 H 0.06 1.31 7.55 -2.39 -0.02 1.30 16 47 H 0.09 1.43 7.20 -2.38 -0.02 1.42 16 48 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 49 H 0.06 2.12 7.16 -2.39 -0.02 2.10 16 Total: -1.00 -67.95 369.60 1.47 -66.48 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.27 Total: 19.69 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 4.88 Total: 1.56 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -4.20 Total: -105.06 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -1.50 Total: -28.10 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.95 1.47 -66.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333021551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.763 kcal (2) G-P(sol) polarization free energy of solvation -67.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds