Wall clock time and date at job start Fri Apr 10 2020 22:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48498 * 109.47033 * 270.00027 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99878 * 3 2 1 6 6 H 1.48496 * 109.47329 * 150.00311 * 3 2 1 7 7 C 1.38819 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99517 * 162.88801 * 7 2 1 9 9 N 1.36932 * 119.99763 * 343.16079 * 7 2 1 10 10 C 1.46922 * 120.63376 * 331.89781 * 9 7 2 11 11 C 1.52760 * 109.00877 * 233.58214 * 10 9 7 12 12 C 1.53039 * 109.38854 * 305.58987 * 11 10 9 13 13 C 1.53042 * 109.53675 * 61.23662 * 12 11 10 14 14 H 1.09002 * 109.49778 * 58.58937 * 13 12 11 15 15 C 1.53000 * 109.49819 * 178.68538 * 13 12 11 16 16 N 1.46501 * 109.47200 * 184.83654 * 15 13 12 17 17 C 1.34775 * 120.00114 * 179.97438 * 16 15 13 18 18 O 1.21279 * 119.99735 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99937 * 180.02562 * 17 16 15 20 20 H 1.08999 * 108.96788 * 301.20009 * 19 17 16 21 21 C 1.54203 * 108.97631 * 182.48209 * 19 17 16 22 22 C 1.50618 * 109.06782 * 161.82921 * 21 19 17 23 23 C 1.53822 * 112.47214 * 90.32530 * 22 21 19 24 24 O 1.43991 * 113.40811 * 317.88745 * 23 22 21 25 25 C 1.40324 * 116.58791 * 317.89493 * 24 23 22 26 26 C 1.46292 * 108.97752 * 60.00384 * 19 17 16 27 27 C 1.46930 * 120.62872 * 152.17982 * 9 7 2 28 28 H 0.97007 * 119.99830 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.58958 * 353.42026 * 10 9 7 30 30 H 1.09005 * 109.58698 * 113.84606 * 10 9 7 31 31 H 1.08996 * 109.56719 * 185.54717 * 11 10 9 32 32 H 1.09010 * 109.35781 * 65.50425 * 11 10 9 33 33 H 1.09001 * 109.45593 * 301.22023 * 12 11 10 34 34 H 1.08996 * 109.46133 * 181.25878 * 12 11 10 35 35 H 1.08995 * 109.47087 * 304.84275 * 15 13 12 36 36 H 1.08998 * 109.46679 * 64.83712 * 15 13 12 37 37 H 0.97007 * 119.99717 * 0.02562 * 16 15 13 38 38 H 1.09007 * 109.53476 * 281.69852 * 21 19 17 39 39 H 1.08991 * 109.54027 * 41.94684 * 21 19 17 40 40 H 1.09008 * 108.87918 * 329.55583 * 22 21 19 41 41 H 1.09001 * 108.88568 * 211.09840 * 22 21 19 42 42 H 1.09001 * 108.69916 * 196.87502 * 23 22 21 43 43 H 1.08995 * 108.59613 * 78.83000 * 23 22 21 44 44 H 1.09001 * 109.59076 * 335.27337 * 25 24 23 45 45 H 1.08998 * 109.72737 * 214.88678 * 25 24 23 46 46 H 1.08991 * 108.93540 * 302.75854 * 26 19 17 47 47 H 1.08998 * 108.93642 * 61.36206 * 26 19 17 48 48 H 1.08997 * 109.58541 * 246.15585 * 27 9 7 49 49 H 1.09004 * 109.58472 * 6.43445 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0544 -1.2228 -0.2758 9 7 1.3695 -2.3628 0.3425 10 6 0.2236 -2.3417 1.2618 11 6 0.4864 -3.3180 2.4069 12 6 0.8068 -4.7000 1.8329 13 6 2.0672 -4.6157 0.9689 14 1 2.8979 -4.2495 1.5721 15 6 2.4053 -6.0040 0.4221 16 7 3.6737 -5.9455 -0.3087 17 6 4.1737 -7.0585 -0.8811 18 8 3.5734 -8.1085 -0.7914 19 6 5.4786 -6.9983 -1.6323 20 1 5.3872 -6.2766 -2.4440 21 6 5.7773 -8.3879 -2.2305 22 6 6.8030 -8.2427 -3.3240 23 6 8.2431 -8.3797 -2.8012 24 8 8.4666 -7.6954 -1.5542 25 6 7.8957 -6.4200 -1.4266 26 6 6.5331 -6.5567 -0.7195 27 6 1.8187 -3.6535 -0.1970 28 1 -0.4850 0.8401 0.0004 29 1 0.0952 -1.3364 1.6627 30 1 -0.6783 -2.6426 0.7285 31 1 -0.3977 -3.3834 3.0410 32 1 1.3321 -2.9640 2.9967 33 1 -0.0292 -5.0426 1.2231 34 1 0.9726 -5.4028 2.6494 35 1 2.4946 -6.7084 1.2491 36 1 1.6131 -6.3323 -0.2507 37 1 4.1540 -5.1057 -0.3801 38 1 6.1654 -9.0443 -1.4516 39 1 4.8619 -8.8115 -2.6433 40 1 6.6878 -7.2629 -3.7878 41 1 6.6266 -9.0104 -4.0773 42 1 8.9261 -7.9759 -3.5486 43 1 8.4636 -9.4382 -2.6633 44 1 7.7525 -5.9831 -2.4149 45 1 8.5516 -5.7807 -0.8358 46 1 6.2547 -5.5908 -0.2984 47 1 6.6259 -7.2803 0.0903 48 1 1.0497 -4.0635 -0.8516 49 1 2.7412 -3.5129 -0.7604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333021554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:20 Heat of formation + Delta-G solvation = -84.345303 kcal Electronic energy + Delta-G solvation = -26716.991897 eV Core-core repulsion = 23064.591963 eV Total energy + Delta-G solvation = -3652.399934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54417 -38.91815 -37.79935 -35.00485 -34.79488 -33.19670 -32.67757 -30.49415 -30.33724 -27.56206 -26.38993 -25.35734 -24.94730 -22.27908 -21.87029 -21.05328 -20.75895 -20.00492 -19.07292 -17.66318 -16.86058 -16.65349 -16.08944 -15.76448 -15.57421 -15.12711 -14.83970 -14.39055 -14.06992 -13.88098 -13.65226 -13.49125 -13.40335 -13.12557 -12.81317 -12.54069 -12.36712 -12.20243 -12.15548 -11.74381 -11.57777 -11.32041 -11.06228 -11.00833 -10.87889 -10.72624 -10.70541 -10.52648 -10.27159 -10.20128 -10.06264 -9.93872 -9.66843 -9.45304 -9.40868 -8.91267 -8.50072 -6.70827 -5.82648 -3.25486 2.70414 3.25763 3.33574 3.41087 3.42657 3.55165 4.27975 4.44412 4.47084 4.59340 4.69301 4.74768 4.95623 5.06087 5.17765 5.19727 5.27076 5.29310 5.30806 5.41849 5.44505 5.44711 5.59061 5.63852 5.69882 5.74704 5.81255 5.86516 5.94892 5.98812 6.02949 6.11585 6.21356 6.31137 6.35519 6.51719 6.56337 6.68365 6.74944 6.84092 6.93625 7.09613 7.37415 7.59572 7.64363 7.74523 8.29299 8.40650 9.17066 9.80694 10.37570 11.25707 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.003153 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.753925 B = 8878.304041 C =10111.700711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.117 4.117 14 H 0.073 0.927 15 C 0.127 3.873 16 N -0.723 5.723 17 C 0.514 3.486 18 O -0.546 6.546 19 C -0.104 4.104 20 H 0.094 0.906 21 C -0.098 4.098 22 C -0.156 4.156 23 C 0.062 3.938 24 O -0.384 6.384 25 C 0.071 3.929 26 C -0.147 4.147 27 C 0.155 3.845 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.017 0.983 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.018 0.982 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.814 -14.003 -2.836 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.375 5.375 17 C 0.300 3.700 18 O -0.423 6.423 19 C -0.126 4.126 20 H 0.112 0.888 21 C -0.135 4.135 22 C -0.194 4.194 23 C -0.014 4.014 24 O -0.303 6.303 25 C -0.006 4.006 26 C -0.185 4.185 27 C 0.028 3.972 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.237 0.763 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.036 0.964 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.346 -14.663 -2.641 19.350 hybrid contribution 0.311 1.514 -0.282 1.571 sum 12.657 -13.149 -2.923 18.484 Atomic orbital electron populations 1.70040 1.05296 1.25526 1.53667 1.25044 0.95268 0.98415 1.00853 0.86319 0.79169 0.83695 0.77706 1.21400 1.21538 1.20482 1.19141 0.92488 0.84811 1.42014 0.91795 1.44019 1.35659 1.01265 1.50420 1.20707 0.88537 0.98339 0.88102 1.22100 1.00115 0.95967 0.99888 1.21340 0.96701 0.97734 0.98005 1.21951 0.98801 0.93639 0.99424 0.90907 1.21453 0.84820 0.97921 0.95509 1.46120 1.24597 1.11705 1.55046 1.20621 0.86678 0.83661 0.79036 1.90672 1.61360 1.29862 1.60446 1.20444 0.92994 1.00111 0.99013 0.88842 1.21140 0.99141 0.95189 0.98073 1.21972 0.95054 1.03131 0.99197 1.22966 0.95149 0.97459 0.85810 1.87467 1.74891 1.30899 1.37033 1.22295 0.93327 0.85125 0.99901 1.21152 0.95145 1.02760 0.99439 1.20885 0.97396 0.86842 0.92093 0.93606 0.89555 0.96508 0.93141 0.92778 0.92493 0.93443 0.92067 0.91671 0.76283 0.90741 0.90263 0.91574 0.90385 0.93205 0.89529 0.92712 0.89295 0.90548 0.90417 0.96418 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 11.18 55.49 0.62 -25.16 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.15 29.59 -169.99 -5.03 16.13 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 8 H 0.06 1.64 7.88 -52.49 -0.41 1.23 16 9 N -0.59 -14.32 3.00 -172.58 -0.52 -14.84 16 10 C 0.17 3.95 5.28 -3.93 -0.02 3.93 16 11 C -0.14 -2.64 6.06 -26.83 -0.16 -2.80 16 12 C -0.10 -1.63 5.17 -26.69 -0.14 -1.76 16 13 C -0.12 -1.90 2.38 -90.50 -0.21 -2.12 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 15 C 0.13 1.84 5.07 -4.04 -0.02 1.82 16 16 N -0.72 -9.44 5.17 -60.30 -0.31 -9.75 16 17 C 0.51 6.97 7.08 -10.99 -0.08 6.89 16 18 O -0.55 -9.35 15.63 5.56 0.09 -9.26 16 19 C -0.10 -1.06 2.09 -94.34 -0.20 -1.26 16 20 H 0.09 0.84 7.59 -51.93 -0.39 0.45 16 21 C -0.10 -0.97 4.51 -27.29 -0.12 -1.10 16 22 C -0.16 -1.17 5.32 -27.50 -0.15 -1.32 16 23 C 0.06 0.47 6.67 37.59 0.25 0.72 16 24 O -0.38 -3.76 10.17 -33.69 -0.34 -4.11 16 25 C 0.07 0.59 6.38 37.74 0.24 0.83 16 26 C -0.15 -1.35 4.62 -29.34 -0.14 -1.48 16 27 C 0.15 3.06 5.60 -3.71 -0.02 3.04 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.09 2.27 6.05 -51.93 -0.31 1.96 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 4.68 6.93 -40.82 -0.28 4.40 16 38 H 0.07 0.82 7.83 -51.92 -0.41 0.41 16 39 H 0.08 0.89 7.46 -51.93 -0.39 0.51 16 40 H 0.07 0.47 6.83 -51.92 -0.35 0.11 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.39 6.98 -51.93 -0.36 0.03 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.64 7.24 -51.93 -0.38 0.26 16 47 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -31.18 370.99 -9.62 -40.79 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.72 Total: 2.15 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.00 Total: -1.53 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.21 Total: -49.75 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.26 Total: -13.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.18 -9.62 -40.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333021554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.552 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds