Wall clock time and date at job start Fri Apr 10 2020 22:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48498 * 109.47033 * 270.00027 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99878 * 3 2 1 6 6 H 1.48496 * 109.47329 * 150.00311 * 3 2 1 7 7 C 1.38819 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99517 * 162.88801 * 7 2 1 9 9 N 1.36932 * 119.99763 * 343.16079 * 7 2 1 10 10 C 1.46922 * 120.63376 * 331.89781 * 9 7 2 11 11 C 1.52760 * 109.00877 * 233.58214 * 10 9 7 12 12 C 1.53039 * 109.38854 * 305.58987 * 11 10 9 13 13 C 1.53042 * 109.53675 * 61.23662 * 12 11 10 14 14 H 1.09002 * 109.49778 * 58.58937 * 13 12 11 15 15 C 1.53000 * 109.49819 * 178.68538 * 13 12 11 16 16 N 1.46501 * 109.47200 * 184.83654 * 15 13 12 17 17 C 1.34775 * 120.00114 * 179.97438 * 16 15 13 18 18 O 1.21279 * 119.99735 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99937 * 180.02562 * 17 16 15 20 20 H 1.08999 * 108.96788 * 301.20009 * 19 17 16 21 21 C 1.54203 * 108.97631 * 182.48209 * 19 17 16 22 22 C 1.50618 * 109.06782 * 161.82921 * 21 19 17 23 23 C 1.53822 * 112.47214 * 90.32530 * 22 21 19 24 24 O 1.43991 * 113.40811 * 317.88745 * 23 22 21 25 25 C 1.40324 * 116.58791 * 317.89493 * 24 23 22 26 26 C 1.46292 * 108.97752 * 60.00384 * 19 17 16 27 27 C 1.46930 * 120.62872 * 152.17982 * 9 7 2 28 28 H 0.97007 * 119.99830 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.58958 * 353.42026 * 10 9 7 30 30 H 1.09005 * 109.58698 * 113.84606 * 10 9 7 31 31 H 1.08996 * 109.56719 * 185.54717 * 11 10 9 32 32 H 1.09010 * 109.35781 * 65.50425 * 11 10 9 33 33 H 1.09001 * 109.45593 * 301.22023 * 12 11 10 34 34 H 1.08996 * 109.46133 * 181.25878 * 12 11 10 35 35 H 1.08995 * 109.47087 * 304.84275 * 15 13 12 36 36 H 1.08998 * 109.46679 * 64.83712 * 15 13 12 37 37 H 0.97007 * 119.99717 * 0.02562 * 16 15 13 38 38 H 1.09007 * 109.53476 * 281.69852 * 21 19 17 39 39 H 1.08991 * 109.54027 * 41.94684 * 21 19 17 40 40 H 1.09008 * 108.87918 * 329.55583 * 22 21 19 41 41 H 1.09001 * 108.88568 * 211.09840 * 22 21 19 42 42 H 1.09001 * 108.69916 * 196.87502 * 23 22 21 43 43 H 1.08995 * 108.59613 * 78.83000 * 23 22 21 44 44 H 1.09001 * 109.59076 * 335.27337 * 25 24 23 45 45 H 1.08998 * 109.72737 * 214.88678 * 25 24 23 46 46 H 1.08991 * 108.93540 * 302.75854 * 26 19 17 47 47 H 1.08998 * 108.93642 * 61.36206 * 26 19 17 48 48 H 1.08997 * 109.58541 * 246.15585 * 27 9 7 49 49 H 1.09004 * 109.58472 * 6.43445 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0544 -1.2228 -0.2758 9 7 1.3695 -2.3628 0.3425 10 6 0.2236 -2.3417 1.2618 11 6 0.4864 -3.3180 2.4069 12 6 0.8068 -4.7000 1.8329 13 6 2.0672 -4.6157 0.9689 14 1 2.8979 -4.2495 1.5721 15 6 2.4053 -6.0040 0.4221 16 7 3.6737 -5.9455 -0.3087 17 6 4.1737 -7.0585 -0.8811 18 8 3.5734 -8.1085 -0.7914 19 6 5.4786 -6.9983 -1.6323 20 1 5.3872 -6.2766 -2.4440 21 6 5.7773 -8.3879 -2.2305 22 6 6.8030 -8.2427 -3.3240 23 6 8.2431 -8.3797 -2.8012 24 8 8.4666 -7.6954 -1.5542 25 6 7.8957 -6.4200 -1.4266 26 6 6.5331 -6.5567 -0.7195 27 6 1.8187 -3.6535 -0.1970 28 1 -0.4850 0.8401 0.0004 29 1 0.0952 -1.3364 1.6627 30 1 -0.6783 -2.6426 0.7285 31 1 -0.3977 -3.3834 3.0410 32 1 1.3321 -2.9640 2.9967 33 1 -0.0292 -5.0426 1.2231 34 1 0.9726 -5.4028 2.6494 35 1 2.4946 -6.7084 1.2491 36 1 1.6131 -6.3323 -0.2507 37 1 4.1540 -5.1057 -0.3801 38 1 6.1654 -9.0443 -1.4516 39 1 4.8619 -8.8115 -2.6433 40 1 6.6878 -7.2629 -3.7878 41 1 6.6266 -9.0104 -4.0773 42 1 8.9261 -7.9759 -3.5486 43 1 8.4636 -9.4382 -2.6633 44 1 7.7525 -5.9831 -2.4149 45 1 8.5516 -5.7807 -0.8358 46 1 6.2547 -5.5908 -0.2984 47 1 6.6259 -7.2803 0.0903 48 1 1.0497 -4.0635 -0.8516 49 1 2.7412 -3.5129 -0.7604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333021554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:20 Heat of formation + Delta-G solvation = -103.780634 kcal Electronic energy + Delta-G solvation = -26717.834677 eV Core-core repulsion = 23064.591963 eV Total energy + Delta-G solvation = -3653.242714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49113 -39.88550 -39.21697 -36.30971 -35.73844 -34.70000 -33.52441 -32.30527 -31.82291 -28.38764 -27.32822 -27.15996 -26.08554 -23.86015 -23.01526 -22.32720 -21.53693 -21.09600 -20.49941 -18.77052 -18.41734 -17.54417 -17.04676 -16.85258 -16.71868 -16.41890 -16.09331 -15.71650 -15.40287 -15.07905 -14.96293 -14.62708 -14.50378 -14.33544 -14.03996 -13.91842 -13.71868 -13.44009 -13.22627 -13.00949 -12.87344 -12.50285 -12.40379 -12.29750 -12.26991 -11.97738 -11.82614 -11.78073 -11.60006 -11.58750 -11.35774 -11.32697 -11.11229 -10.86517 -10.52588 -10.29026 -10.05873 -8.67565 -7.86237 -5.31928 1.47686 1.49823 1.58937 1.63622 2.21267 2.51990 2.96082 3.29067 3.52399 3.58875 3.67605 3.90556 3.97455 3.99281 4.01669 4.06095 4.12578 4.32991 4.39339 4.43750 4.55958 4.57217 4.58626 4.62268 4.65910 4.75470 4.78577 4.87559 4.90167 4.98918 5.00568 5.07831 5.10110 5.11808 5.15957 5.23187 5.27474 5.32644 5.35661 5.39500 5.49600 5.57566 5.67076 5.78065 6.39303 6.49898 6.54752 7.15468 7.23022 7.86810 8.39104 9.20310 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.003153 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.753925 B = 8878.304041 C =10111.700711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.073 0.927 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.099 4.099 14 H 0.077 0.923 15 C 0.137 3.863 16 N -0.718 5.718 17 C 0.512 3.488 18 O -0.585 6.585 19 C -0.097 4.097 20 H 0.112 0.888 21 C -0.095 4.095 22 C -0.150 4.150 23 C 0.059 3.941 24 O -0.405 6.405 25 C 0.070 3.930 26 C -0.143 4.143 27 C 0.153 3.847 28 H 0.249 0.751 29 H 0.052 0.948 30 H -0.009 1.009 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.411 0.589 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.060 0.940 48 H 0.004 0.996 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.959 -14.387 -2.909 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.392 4.392 8 H 0.090 0.910 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.096 0.904 15 C 0.013 3.987 16 N -0.370 5.370 17 C 0.299 3.701 18 O -0.465 6.465 19 C -0.118 4.118 20 H 0.130 0.870 21 C -0.133 4.133 22 C -0.188 4.188 23 C -0.017 4.017 24 O -0.325 6.325 25 C -0.007 4.007 26 C -0.181 4.181 27 C 0.028 3.972 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.248 0.752 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.118 0.882 46 H 0.105 0.895 47 H 0.078 0.922 48 H 0.022 0.978 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.525 -15.058 -2.715 21.098 hybrid contribution -0.388 1.581 -0.290 1.653 sum 14.138 -13.477 -3.005 19.762 Atomic orbital electron populations 1.70206 1.06838 1.25769 1.55525 1.25822 0.95978 1.01615 1.01397 0.85291 0.78177 0.79531 0.77537 1.21186 1.22285 1.19150 1.19553 0.93016 0.85826 1.40769 0.90976 1.44291 1.35606 1.02250 1.51074 1.20538 0.87691 0.97785 0.89286 1.21927 1.00975 0.95910 0.98071 1.21340 0.96548 0.96780 0.98908 1.21710 0.98994 0.93448 0.97832 0.90438 1.21240 0.85241 0.96668 0.95580 1.46076 1.24092 1.12156 1.54644 1.21233 0.87379 0.82920 0.78531 1.90656 1.62685 1.31275 1.61909 1.20487 0.91304 1.00769 0.99259 0.86980 1.21090 0.99114 0.94710 0.98392 1.21928 0.94244 1.04181 0.98444 1.23094 0.95331 0.97776 0.85528 1.87444 1.75159 1.31632 1.38229 1.22377 0.92652 0.84884 1.00754 1.21129 0.95527 1.02669 0.98779 1.21011 0.97101 0.85710 0.93394 0.94240 0.92996 0.99114 0.91295 0.92777 0.92787 0.90290 0.91336 0.92765 0.75246 0.92272 0.91942 0.90606 0.89093 0.91603 0.89143 0.91251 0.88246 0.89491 0.92157 0.97828 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.10 11.18 21.65 0.24 -54.86 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 3 Si 0.97 43.67 29.59 68.60 2.03 45.70 16 4 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.26 -13.85 9.58 84.04 0.81 -13.05 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 9 N -0.61 -29.56 3.00 -699.92 -2.10 -31.66 16 10 C 0.17 8.24 5.28 86.22 0.45 8.69 16 11 C -0.13 -4.68 6.06 30.53 0.19 -4.50 16 12 C -0.10 -2.98 5.17 30.62 0.16 -2.82 16 13 C -0.10 -3.03 2.38 -10.72 -0.03 -3.06 16 14 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 15 C 0.14 3.74 5.07 86.38 0.44 4.18 16 16 N -0.72 -17.50 5.17 -463.08 -2.39 -19.89 16 17 C 0.51 13.30 7.08 87.66 0.62 13.92 16 18 O -0.58 -19.87 15.63 -3.02 -0.05 -19.92 16 19 C -0.10 -1.82 2.09 -13.20 -0.03 -1.85 16 20 H 0.11 1.71 7.59 -2.39 -0.02 1.69 16 21 C -0.10 -1.81 4.51 30.23 0.14 -1.67 16 22 C -0.15 -1.94 5.32 30.10 0.16 -1.78 16 23 C 0.06 0.76 6.67 72.26 0.48 1.24 16 24 O -0.41 -7.18 10.17 -143.47 -1.46 -8.64 16 25 C 0.07 0.99 6.38 72.36 0.46 1.45 16 26 C -0.14 -2.35 4.62 28.90 0.13 -2.22 16 27 C 0.15 5.95 5.60 86.36 0.48 6.43 16 28 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 29 H 0.05 2.82 6.05 -2.39 -0.01 2.80 16 30 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.41 8.61 6.93 -92.70 -0.64 7.97 16 38 H 0.06 1.29 7.83 -2.38 -0.02 1.27 16 39 H 0.06 1.39 7.46 -2.39 -0.02 1.38 16 40 H 0.08 0.85 6.83 -2.38 -0.02 0.83 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 0.77 6.98 -2.39 -0.02 0.76 16 45 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.09 1.23 7.24 -2.39 -0.02 1.21 16 47 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 48 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 49 H 0.06 2.13 7.14 -2.39 -0.02 2.11 16 Total: -1.00 -68.53 370.99 1.43 -67.09 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.28 Total: 19.67 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 4.88 Total: 2.49 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -4.25 Total: -106.40 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -1.51 Total: -28.56 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -68.53 1.43 -67.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333021554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.686 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds