Wall clock time and date at job start Fri Apr 10 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99748 * 2 1 4 4 H 1.48508 * 109.47009 * 240.00131 * 3 2 1 5 5 H 1.48490 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46995 * 120.00715 * 3 2 1 7 7 C 1.37876 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99988 * 180.27242 * 7 2 1 9 9 C 1.50700 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46935 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.45988 * 295.02763 * 10 9 7 12 12 C 1.53193 * 109.31208 * 178.60155 * 11 10 9 13 13 N 1.46926 * 108.76657 * 54.65142 * 12 11 10 14 14 C 1.34778 * 120.62900 * 126.36321 * 13 12 11 15 15 O 1.21587 * 120.00347 * 354.79469 * 14 13 12 16 16 N 1.34776 * 120.00186 * 174.80421 * 14 13 12 17 17 C 1.46498 * 120.00213 * 184.97971 * 16 14 13 18 18 H 1.08999 * 108.94793 * 34.99101 * 17 16 14 19 19 C 1.46286 * 108.96509 * 153.76050 * 17 16 14 20 20 C 1.54206 * 112.07434 * 181.55707 * 19 17 16 21 21 C 1.50416 * 108.76922 * 282.18496 * 20 19 17 22 22 O 1.44189 * 112.76912 * 92.57993 * 21 20 19 23 23 C 1.44183 * 116.92741 * 318.46998 * 22 21 20 24 24 C 1.50475 * 112.70978 * 318.47704 * 23 22 21 25 25 C 1.46924 * 118.74406 * 306.38730 * 13 12 11 26 26 C 1.53045 * 109.45805 * 174.97293 * 10 9 7 27 27 H 0.96999 * 119.99979 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47236 * 300.00003 * 9 7 2 29 29 H 1.09000 * 109.47193 * 60.00366 * 9 7 2 30 30 H 1.08997 * 109.46114 * 54.99982 * 10 9 7 31 31 H 1.09002 * 109.49795 * 298.56123 * 11 10 9 32 32 H 1.08994 * 109.49944 * 58.66428 * 11 10 9 33 33 H 1.09004 * 109.59730 * 294.86819 * 12 11 10 34 34 H 1.09002 * 109.70730 * 174.50226 * 12 11 10 35 35 H 0.97005 * 119.99878 * 4.96887 * 16 14 13 36 36 H 1.09001 * 108.95707 * 302.22262 * 19 17 16 37 37 H 1.08997 * 108.96102 * 60.97807 * 19 17 16 38 38 H 1.09004 * 109.58697 * 41.97155 * 20 19 17 39 39 H 1.08997 * 109.58578 * 162.39736 * 20 19 17 40 40 H 1.08995 * 108.81971 * 213.43093 * 21 20 19 41 41 H 1.09001 * 108.82085 * 331.84104 * 21 20 19 42 42 H 1.09005 * 108.81414 * 79.33251 * 23 22 21 43 43 H 1.09004 * 108.82035 * 197.73344 * 23 22 21 44 44 H 1.09003 * 109.66474 * 332.86388 * 24 23 22 45 45 H 1.08999 * 109.54023 * 212.41927 * 24 23 22 46 46 H 1.08996 * 109.58432 * 293.82205 * 25 13 12 47 47 H 1.08995 * 109.70970 * 173.45892 * 25 13 12 48 48 H 1.09003 * 109.49923 * 301.33355 * 26 10 9 49 49 H 1.08994 * 109.49926 * 61.43583 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 0.0039 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 3.0396 -3.6523 -1.3099 12 6 4.0579 -4.7967 -1.2928 13 7 3.3493 -6.0560 -1.0267 14 6 3.4896 -7.1108 -1.8538 15 8 4.1310 -6.9973 -2.8805 16 7 2.9187 -8.2915 -1.5431 17 6 3.1607 -9.4661 -2.3844 18 1 4.1824 -9.4267 -2.7619 19 6 2.9998 -10.6730 -1.5734 20 6 3.2772 -11.9561 -2.3825 21 6 2.0788 -12.2558 -3.2406 22 8 2.1811 -11.6851 -4.5608 23 6 2.7102 -10.3472 -4.6547 24 6 2.1842 -9.4375 -3.5775 25 6 2.4846 -6.1434 0.1579 26 6 1.4841 -4.9837 0.1246 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 0.8896 29 1 0.6241 -2.5567 -0.8903 30 1 2.9300 -3.5554 0.8395 31 1 2.3581 -3.7841 -2.1503 32 1 3.5628 -2.7015 -1.4107 33 1 4.7943 -4.6191 -0.5090 34 1 4.5595 -4.8568 -2.2587 35 1 2.3476 -8.3635 -0.7622 36 1 3.6908 -10.6287 -0.7316 37 1 1.9793 -10.7100 -1.1921 38 1 4.1519 -11.8069 -3.0156 39 1 3.4550 -12.7871 -1.7000 40 1 1.9732 -13.3367 -3.3319 41 1 1.1891 -11.8558 -2.7542 42 1 3.7966 -10.3926 -4.5780 43 1 2.4438 -9.9310 -5.6263 44 1 1.2018 -9.7818 -3.2541 45 1 2.1085 -8.4210 -3.9636 46 1 3.0927 -6.0757 1.0599 47 1 1.9459 -7.0910 0.1506 48 1 0.9001 -4.9807 1.0450 49 1 0.8174 -5.1028 -0.7294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335440091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:23 Heat of formation + Delta-G solvation = -89.016398 kcal Electronic energy + Delta-G solvation = -26657.895346 eV Core-core repulsion = 23005.292857 eV Total energy + Delta-G solvation = -3652.602488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70304 -39.43307 -37.50630 -35.85503 -34.08569 -33.24978 -32.28889 -31.62143 -30.53114 -28.14337 -27.21528 -25.43010 -24.51894 -22.80615 -21.99017 -21.26308 -20.84810 -20.03580 -19.16660 -17.95725 -17.21557 -16.85216 -16.26003 -15.84319 -15.61953 -14.98895 -14.58085 -14.48249 -14.37315 -13.99214 -13.85788 -13.57887 -13.30115 -13.14647 -13.07438 -12.85879 -12.72230 -12.18083 -11.95812 -11.82452 -11.63241 -11.33682 -11.19798 -11.08109 -11.01913 -10.85398 -10.76612 -10.68252 -10.42911 -10.19961 -9.93593 -9.77883 -9.64246 -9.28571 -9.17560 -8.99193 -8.35914 -8.25784 -6.00681 -4.02576 2.67204 3.27162 3.32462 3.37315 3.39410 3.50043 3.84901 4.25500 4.42573 4.44982 4.50020 4.61564 4.86393 4.96998 5.03888 5.16560 5.16937 5.27169 5.31066 5.34057 5.35717 5.36445 5.49865 5.55747 5.58489 5.64496 5.69491 5.76562 5.80602 5.86327 5.95961 5.99596 6.08474 6.31471 6.37436 6.44180 6.48991 6.63012 6.94268 6.97038 7.00894 7.07648 7.12889 7.64755 7.79480 7.98739 7.99983 8.41404 8.66919 9.03634 9.61306 11.10590 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.032136 B = 0.002466 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.084531 B =11351.833084 C =11396.322491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.118 4.118 12 C 0.126 3.874 13 N -0.622 5.622 14 C 0.707 3.293 15 O -0.595 6.595 16 N -0.749 5.749 17 C 0.165 3.835 18 H 0.085 0.915 19 C -0.133 4.133 20 C -0.148 4.148 21 C 0.061 3.939 22 O -0.396 6.396 23 C 0.067 3.933 24 C -0.164 4.164 25 C 0.114 3.886 26 C -0.130 4.130 27 H 0.260 0.740 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.394 0.606 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -24.277 -1.667 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.098 4.098 11 C -0.156 4.156 12 C 0.004 3.996 13 N -0.359 5.359 14 C 0.409 3.591 15 O -0.473 6.473 16 N -0.407 5.407 17 C 0.060 3.940 18 H 0.103 0.897 19 C -0.171 4.171 20 C -0.186 4.186 21 C -0.015 4.015 22 O -0.316 6.316 23 C -0.009 4.009 24 C -0.203 4.203 25 C -0.010 4.010 26 C -0.168 4.168 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.206 -24.151 -2.555 24.838 hybrid contribution 0.063 1.214 0.794 1.452 sum 5.269 -22.937 -1.761 23.600 Atomic orbital electron populations 1.69954 1.06055 1.26657 1.50912 1.25021 0.94814 0.99202 0.95437 0.86695 0.79606 0.83322 0.78604 1.20230 1.21380 1.20304 1.21199 0.92926 0.90954 1.50394 0.92626 1.19115 0.93584 0.91074 0.97095 1.21177 0.97959 0.94344 0.96340 1.21904 0.97725 0.97353 0.98661 1.21668 0.94402 0.81731 1.01827 1.47367 1.49338 1.12705 1.26469 1.15848 0.79898 0.80295 0.83108 1.90883 1.47321 1.83502 1.25626 1.45497 1.54416 1.08766 1.31983 1.19840 1.00129 0.83731 0.90297 0.89682 1.20952 1.03010 0.93959 0.99218 1.21848 0.99787 0.97556 0.99452 1.22317 0.96882 0.98417 0.83897 1.88262 1.85710 1.29853 1.27808 1.22232 0.97818 0.81604 0.99287 1.22384 0.99683 1.01856 0.96377 1.21672 0.92606 0.98894 0.87788 1.22034 0.97498 0.95147 1.02147 0.93000 0.96689 0.96670 0.92368 0.92379 0.89784 0.92148 0.89568 0.76955 0.90820 0.91200 0.90309 0.89880 0.89550 0.93075 0.92843 0.89196 0.90772 0.89502 0.91567 0.91627 0.91152 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.03 8.38 -34.44 -0.29 -14.32 16 8 H 0.06 1.46 7.07 -52.49 -0.37 1.09 16 9 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 10 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 11 C -0.12 -2.15 5.19 -26.61 -0.14 -2.29 16 12 C 0.13 1.99 6.44 -3.71 -0.02 1.97 16 13 N -0.62 -9.03 2.97 -178.50 -0.53 -9.56 16 14 C 0.71 10.55 8.11 -86.92 -0.70 9.84 16 15 O -0.59 -10.90 15.38 5.29 0.08 -10.82 16 16 N -0.75 -8.18 4.93 -61.22 -0.30 -8.49 16 17 C 0.17 1.59 1.97 -70.49 -0.14 1.45 16 18 H 0.09 0.97 7.03 -51.93 -0.37 0.61 16 19 C -0.13 -0.90 4.69 -29.29 -0.14 -1.03 16 20 C -0.15 -0.90 5.61 -27.39 -0.15 -1.05 16 21 C 0.06 0.44 6.27 35.87 0.22 0.66 16 22 O -0.40 -3.99 10.88 -35.23 -0.38 -4.37 16 23 C 0.07 0.64 6.27 35.90 0.22 0.87 16 24 C -0.16 -1.64 5.18 -27.36 -0.14 -1.78 16 25 C 0.11 1.40 6.38 -3.71 -0.02 1.37 16 26 C -0.13 -2.00 5.36 -26.60 -0.14 -2.14 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.64 6.92 -51.93 -0.36 1.28 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 35 H 0.39 3.46 6.06 -40.82 -0.25 3.21 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.41 7.55 -51.93 -0.39 0.02 16 38 H 0.08 0.54 7.15 -51.93 -0.37 0.17 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.35 6.66 -51.93 -0.35 0.00 16 42 H 0.05 0.50 6.67 -51.93 -0.35 0.16 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.69 7.14 -51.93 -0.37 0.32 16 45 H 0.09 1.07 7.91 -51.93 -0.41 0.66 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.62 5.65 -51.93 -0.29 0.33 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -32.20 368.97 -10.16 -42.36 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.44 Total: 0.91 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.86 Total: -6.10 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.10 Total: -43.92 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.30 Total: -15.19 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.20 -10.16 -42.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335440091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.656 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds