Wall clock time and date at job start Fri Apr 10 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99748 * 2 1 4 4 H 1.48508 * 109.47009 * 240.00131 * 3 2 1 5 5 H 1.48490 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46995 * 120.00715 * 3 2 1 7 7 C 1.37876 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99988 * 180.27242 * 7 2 1 9 9 C 1.50700 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46935 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.45988 * 295.02763 * 10 9 7 12 12 C 1.53193 * 109.31208 * 178.60155 * 11 10 9 13 13 N 1.46926 * 108.76657 * 54.65142 * 12 11 10 14 14 C 1.34778 * 120.62900 * 126.36321 * 13 12 11 15 15 O 1.21587 * 120.00347 * 354.79469 * 14 13 12 16 16 N 1.34776 * 120.00186 * 174.80421 * 14 13 12 17 17 C 1.46498 * 120.00213 * 184.97971 * 16 14 13 18 18 H 1.08999 * 108.94793 * 34.99101 * 17 16 14 19 19 C 1.46286 * 108.96509 * 153.76050 * 17 16 14 20 20 C 1.54206 * 112.07434 * 181.55707 * 19 17 16 21 21 C 1.50416 * 108.76922 * 282.18496 * 20 19 17 22 22 O 1.44189 * 112.76912 * 92.57993 * 21 20 19 23 23 C 1.44183 * 116.92741 * 318.46998 * 22 21 20 24 24 C 1.50475 * 112.70978 * 318.47704 * 23 22 21 25 25 C 1.46924 * 118.74406 * 306.38730 * 13 12 11 26 26 C 1.53045 * 109.45805 * 174.97293 * 10 9 7 27 27 H 0.96999 * 119.99979 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47236 * 300.00003 * 9 7 2 29 29 H 1.09000 * 109.47193 * 60.00366 * 9 7 2 30 30 H 1.08997 * 109.46114 * 54.99982 * 10 9 7 31 31 H 1.09002 * 109.49795 * 298.56123 * 11 10 9 32 32 H 1.08994 * 109.49944 * 58.66428 * 11 10 9 33 33 H 1.09004 * 109.59730 * 294.86819 * 12 11 10 34 34 H 1.09002 * 109.70730 * 174.50226 * 12 11 10 35 35 H 0.97005 * 119.99878 * 4.96887 * 16 14 13 36 36 H 1.09001 * 108.95707 * 302.22262 * 19 17 16 37 37 H 1.08997 * 108.96102 * 60.97807 * 19 17 16 38 38 H 1.09004 * 109.58697 * 41.97155 * 20 19 17 39 39 H 1.08997 * 109.58578 * 162.39736 * 20 19 17 40 40 H 1.08995 * 108.81971 * 213.43093 * 21 20 19 41 41 H 1.09001 * 108.82085 * 331.84104 * 21 20 19 42 42 H 1.09005 * 108.81414 * 79.33251 * 23 22 21 43 43 H 1.09004 * 108.82035 * 197.73344 * 23 22 21 44 44 H 1.09003 * 109.66474 * 332.86388 * 24 23 22 45 45 H 1.08999 * 109.54023 * 212.41927 * 24 23 22 46 46 H 1.08996 * 109.58432 * 293.82205 * 25 13 12 47 47 H 1.08995 * 109.70970 * 173.45892 * 25 13 12 48 48 H 1.09003 * 109.49923 * 301.33355 * 26 10 9 49 49 H 1.08994 * 109.49926 * 61.43583 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 0.0039 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 3.0396 -3.6523 -1.3099 12 6 4.0579 -4.7967 -1.2928 13 7 3.3493 -6.0560 -1.0267 14 6 3.4896 -7.1108 -1.8538 15 8 4.1310 -6.9973 -2.8805 16 7 2.9187 -8.2915 -1.5431 17 6 3.1607 -9.4661 -2.3844 18 1 4.1824 -9.4267 -2.7619 19 6 2.9998 -10.6730 -1.5734 20 6 3.2772 -11.9561 -2.3825 21 6 2.0788 -12.2558 -3.2406 22 8 2.1811 -11.6851 -4.5608 23 6 2.7102 -10.3472 -4.6547 24 6 2.1842 -9.4375 -3.5775 25 6 2.4846 -6.1434 0.1579 26 6 1.4841 -4.9837 0.1246 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 0.8896 29 1 0.6241 -2.5567 -0.8903 30 1 2.9300 -3.5554 0.8395 31 1 2.3581 -3.7841 -2.1503 32 1 3.5628 -2.7015 -1.4107 33 1 4.7943 -4.6191 -0.5090 34 1 4.5595 -4.8568 -2.2587 35 1 2.3476 -8.3635 -0.7622 36 1 3.6908 -10.6287 -0.7316 37 1 1.9793 -10.7100 -1.1921 38 1 4.1519 -11.8069 -3.0156 39 1 3.4550 -12.7871 -1.7000 40 1 1.9732 -13.3367 -3.3319 41 1 1.1891 -11.8558 -2.7542 42 1 3.7966 -10.3926 -4.5780 43 1 2.4438 -9.9310 -5.6263 44 1 1.2018 -9.7818 -3.2541 45 1 2.1085 -8.4210 -3.9636 46 1 3.0927 -6.0757 1.0599 47 1 1.9459 -7.0910 0.1506 48 1 0.9001 -4.9807 1.0450 49 1 0.8174 -5.1028 -0.7294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335440091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:23 Heat of formation + Delta-G solvation = -109.337096 kcal Electronic energy + Delta-G solvation = -26658.776517 eV Core-core repulsion = 23005.292857 eV Total energy + Delta-G solvation = -3653.483660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.72096 -40.30873 -38.77480 -36.76155 -35.72243 -34.26484 -33.73154 -32.68567 -31.74286 -29.78893 -28.01824 -26.46916 -25.89697 -24.08993 -23.56536 -21.99184 -21.71309 -21.24539 -20.40206 -19.08497 -18.42070 -17.99894 -17.54846 -16.86536 -16.59728 -16.52759 -15.85969 -15.52702 -15.38617 -15.08638 -14.91863 -14.68838 -14.46237 -14.40020 -14.24736 -13.96924 -13.82316 -13.41814 -13.39341 -13.01272 -12.74543 -12.55424 -12.48934 -12.34827 -12.29511 -12.09702 -12.03702 -11.82907 -11.73531 -11.42090 -11.32863 -11.23900 -11.03109 -10.80979 -10.51510 -10.45905 -10.21333 -9.44489 -8.17052 -6.26034 1.40465 1.42607 1.50030 1.63144 2.12038 2.42173 2.82614 2.90037 3.16569 3.60732 3.76837 3.89780 3.94018 3.99658 4.05007 4.08423 4.14359 4.22472 4.38385 4.43208 4.47814 4.49894 4.55314 4.67714 4.68629 4.75457 4.81028 4.86633 4.89717 4.96947 5.00837 5.06350 5.11717 5.14133 5.20937 5.28325 5.31537 5.33613 5.39067 5.53520 5.55648 5.61590 5.81514 5.90239 5.99967 6.29894 6.30242 6.90631 6.96880 7.42466 7.55181 8.94535 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.032136 B = 0.002466 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.084531 B =11351.833084 C =11396.322491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.033 3.967 10 C -0.072 4.072 11 C -0.110 4.110 12 C 0.136 3.864 13 N -0.625 5.625 14 C 0.702 3.298 15 O -0.634 6.634 16 N -0.733 5.733 17 C 0.168 3.832 18 H 0.065 0.935 19 C -0.129 4.129 20 C -0.142 4.142 21 C 0.053 3.947 22 O -0.415 6.415 23 C 0.071 3.929 24 C -0.157 4.157 25 C 0.119 3.881 26 C -0.125 4.125 27 H 0.261 0.739 28 H -0.008 1.008 29 H -0.018 1.018 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.408 0.592 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.082 0.918 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.861 -26.187 -0.074 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.081 0.919 9 C -0.004 4.004 10 C -0.091 4.091 11 C -0.148 4.148 12 C 0.013 3.987 13 N -0.361 5.361 14 C 0.404 3.596 15 O -0.516 6.516 16 N -0.390 5.390 17 C 0.063 3.937 18 H 0.083 0.917 19 C -0.167 4.167 20 C -0.181 4.181 21 C -0.023 4.023 22 O -0.335 6.335 23 C -0.006 4.006 24 C -0.196 4.196 25 C -0.003 4.003 26 C -0.163 4.163 27 H 0.070 0.930 28 H 0.010 0.990 29 H 0.000 1.000 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.247 0.753 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.120 0.880 48 H 0.100 0.900 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.140 -26.101 -0.929 26.829 hybrid contribution -0.290 1.782 0.270 1.825 sum 5.850 -24.319 -0.659 25.022 Atomic orbital electron populations 1.70094 1.07763 1.27548 1.52294 1.25938 0.95665 1.03175 0.95211 0.85606 0.78319 0.78642 0.79142 1.19477 1.21280 1.19005 1.21656 0.93524 0.92101 1.49406 0.91876 1.19013 0.94030 0.93045 0.94292 1.21022 0.96983 0.94203 0.96843 1.21756 0.97725 0.97920 0.97445 1.21442 0.93764 0.81394 1.02072 1.47382 1.49523 1.12129 1.27112 1.16040 0.79850 0.81185 0.82554 1.90860 1.49125 1.84252 1.27322 1.45393 1.53566 1.07789 1.32300 1.19929 0.98835 0.84445 0.90464 0.91694 1.20923 1.04298 0.92515 0.98947 1.21829 0.98775 0.97986 0.99467 1.22564 0.97630 0.99206 0.82899 1.88240 1.85788 1.29638 1.29876 1.22139 0.97678 0.81757 0.99043 1.22284 1.00370 1.00251 0.96696 1.21786 0.91966 0.98972 0.87561 1.21943 0.97847 0.94365 1.02147 0.93028 0.98952 1.00003 0.91671 0.94548 0.91478 0.90240 0.90668 0.75322 0.89769 0.89596 0.91376 0.87423 0.88038 0.92447 0.93011 0.89571 0.89835 0.92318 0.89403 0.88043 0.89989 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 13.29 21.45 0.28 -56.68 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.53 -29.19 8.38 25.60 0.21 -28.98 16 8 H 0.06 3.31 7.07 -2.92 -0.02 3.29 16 9 C 0.03 1.69 4.45 29.85 0.13 1.82 16 10 C -0.07 -2.72 2.10 -10.77 -0.02 -2.75 16 11 C -0.11 -4.07 5.19 30.67 0.16 -3.91 16 12 C 0.14 4.20 6.44 86.36 0.56 4.75 16 13 N -0.63 -17.08 2.97 -836.90 -2.49 -19.57 16 14 C 0.70 20.11 8.11 179.05 1.45 21.56 16 15 O -0.63 -23.34 15.38 -3.99 -0.06 -23.40 16 16 N -0.73 -14.40 4.93 -465.85 -2.30 -16.70 16 17 C 0.17 2.97 1.97 43.33 0.09 3.05 16 18 H 0.06 1.45 7.03 -2.39 -0.02 1.43 16 19 C -0.13 -1.34 4.69 28.93 0.14 -1.20 16 20 C -0.14 -1.34 5.61 30.17 0.17 -1.17 16 21 C 0.05 0.63 6.27 71.15 0.45 1.07 16 22 O -0.41 -7.90 10.88 -148.98 -1.62 -9.52 16 23 C 0.07 1.34 6.27 71.17 0.45 1.79 16 24 C -0.16 -3.04 5.18 30.19 0.16 -2.88 16 25 C 0.12 2.56 6.38 86.37 0.55 3.11 16 26 C -0.12 -3.67 5.36 30.68 0.16 -3.50 16 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 2.67 6.92 -2.39 -0.02 2.65 16 33 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.07 2.51 6.99 -2.39 -0.02 2.49 16 35 H 0.41 5.67 6.06 -92.70 -0.56 5.10 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.67 7.55 -2.39 -0.02 0.65 16 38 H 0.07 0.82 7.15 -2.38 -0.02 0.80 16 39 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.61 6.66 -2.39 -0.02 0.60 16 42 H 0.05 0.99 6.67 -2.38 -0.02 0.97 16 43 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.08 1.44 7.14 -2.39 -0.02 1.42 16 45 H 0.06 1.48 7.91 -2.39 -0.02 1.46 16 46 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.10 1.47 5.65 -2.39 -0.01 1.46 16 48 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -72.46 368.97 1.32 -71.14 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.37 Total: 15.48 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 5.11 Total: -6.92 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -4.50 Total: -92.95 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.68 Total: -32.93 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -72.46 1.32 -71.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335440091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.194 kcal (2) G-P(sol) polarization free energy of solvation -72.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds