Wall clock time and date at job start Fri Apr 10 2020 22:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86792 * 120.00013 * 2 1 4 4 H 1.48502 * 109.47428 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47357 * 120.00165 * 3 2 1 6 6 H 1.48510 * 109.47128 * 239.99918 * 3 2 1 7 7 C 1.37878 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47007 * 179.97438 * 9 7 2 11 11 C 1.53033 * 109.45739 * 295.02751 * 10 9 7 12 12 C 1.53198 * 109.31213 * 178.59819 * 11 10 9 13 13 N 1.46930 * 108.76179 * 54.65759 * 12 11 10 14 14 C 1.34775 * 120.63274 * 126.40642 * 13 12 11 15 15 O 1.21583 * 119.99869 * 174.93558 * 14 13 12 16 16 N 1.34774 * 119.99937 * 354.93794 * 14 13 12 17 17 C 1.46498 * 120.00298 * 185.08311 * 16 14 13 18 18 H 1.09006 * 108.96038 * 324.99886 * 17 16 14 19 19 C 1.54197 * 108.98078 * 206.20018 * 17 16 14 20 20 C 1.50682 * 109.03641 * 161.74652 * 19 17 16 21 21 C 1.53822 * 112.39285 * 90.42973 * 20 19 17 22 22 O 1.43985 * 113.41344 * 317.88077 * 21 20 19 23 23 C 1.40322 * 116.58375 * 317.89407 * 22 21 20 24 24 C 1.46283 * 108.97868 * 83.79884 * 17 16 14 25 25 C 1.46931 * 118.73607 * 306.37950 * 13 12 11 26 26 C 1.53039 * 109.45873 * 174.97006 * 10 9 7 27 27 H 0.97001 * 119.99835 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47399 * 299.99319 * 9 7 2 29 29 H 1.08997 * 109.47600 * 59.99875 * 9 7 2 30 30 H 1.09003 * 109.45814 * 54.99664 * 10 9 7 31 31 H 1.09002 * 109.50081 * 298.56299 * 11 10 9 32 32 H 1.09004 * 109.49926 * 58.66080 * 11 10 9 33 33 H 1.08993 * 109.59813 * 294.86622 * 12 11 10 34 34 H 1.09006 * 109.70187 * 174.50384 * 12 11 10 35 35 H 0.97009 * 120.00031 * 5.08181 * 16 14 13 36 36 H 1.09004 * 109.53881 * 281.69950 * 19 17 16 37 37 H 1.09003 * 109.54009 * 41.94677 * 19 17 16 38 38 H 1.09005 * 108.92473 * 329.68131 * 20 19 17 39 39 H 1.09000 * 108.84121 * 211.12230 * 20 19 17 40 40 H 1.08998 * 108.69380 * 196.86370 * 21 20 19 41 41 H 1.08998 * 108.69315 * 78.89869 * 21 20 19 42 42 H 1.09004 * 109.59615 * 335.27142 * 23 22 21 43 43 H 1.09001 * 109.72575 * 214.88115 * 23 22 21 44 44 H 1.09006 * 108.93659 * 302.76882 * 24 17 16 45 45 H 1.09004 * 108.93682 * 61.36382 * 24 17 16 46 46 H 1.08995 * 109.58791 * 293.82903 * 25 13 12 47 47 H 1.09002 * 109.69783 * 173.46898 * 25 13 12 48 48 H 1.08999 * 109.50101 * 301.33296 * 26 10 9 49 49 H 1.09004 * 109.49893 * 61.40553 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6963 -1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6622 0.0005 11 6 3.0405 -3.6530 -1.3069 12 6 4.0588 -4.7973 -1.2886 13 7 3.3500 -6.0565 -1.0225 14 6 3.4915 -7.1120 -1.8486 15 8 2.9740 -8.1762 -1.5693 16 7 4.2065 -6.9878 -2.9842 17 6 4.2683 -8.0995 -3.9363 18 1 4.2640 -9.0394 -3.3841 19 6 5.5790 -7.9975 -4.7421 20 6 5.8690 -9.3316 -5.3798 21 6 5.2525 -9.4565 -6.7835 22 8 3.9159 -8.9281 -6.8704 23 6 3.0539 -9.2219 -5.8029 24 6 3.0899 -8.0508 -4.8017 25 6 2.4844 -6.1434 0.1616 26 6 1.4839 -4.9837 0.1270 27 1 -0.4850 -0.8401 0.0004 28 1 0.6241 -2.5567 0.8904 29 1 0.6247 -2.5571 -0.8896 30 1 2.9293 -3.5551 0.8424 31 1 2.3597 -3.7850 -2.1478 32 1 3.5638 -2.7021 -1.4078 33 1 4.7946 -4.6194 -0.5044 34 1 4.5612 -4.8577 -2.2541 35 1 4.6803 -6.1622 -3.1713 36 1 5.4729 -7.2373 -5.5160 37 1 6.3974 -7.7280 -4.0744 38 1 5.4659 -10.1215 -4.7459 39 1 6.9490 -9.4579 -5.4563 40 1 5.2307 -10.5098 -7.0630 41 1 5.8860 -8.9228 -7.4920 42 1 3.3827 -10.1360 -5.3083 43 1 2.0380 -9.3531 -6.1757 44 1 2.1940 -8.0876 -4.1818 45 1 3.0964 -7.1120 -5.3556 46 1 3.0918 -6.0752 1.0640 47 1 1.9458 -7.0910 0.1542 48 1 0.8993 -4.9802 1.0470 49 1 0.8175 -5.1029 -0.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335440095.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:25 Heat of formation + Delta-G solvation = -114.742525 kcal Electronic energy + Delta-G solvation = -26758.827802 eV Core-core repulsion = 23105.109745 eV Total energy + Delta-G solvation = -3653.718057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75821 -40.35161 -38.92383 -36.86876 -35.97019 -34.34768 -33.79437 -32.78076 -31.76793 -29.49691 -27.65151 -26.54414 -25.79504 -24.29622 -23.73532 -22.11479 -21.75399 -21.41588 -20.47594 -19.15465 -18.82003 -18.07976 -17.34428 -16.93866 -16.60147 -16.07821 -15.89282 -15.66076 -15.52144 -15.30811 -15.18277 -14.87785 -14.73592 -14.48724 -14.29233 -13.91363 -13.69566 -13.31470 -13.26372 -13.13997 -12.96882 -12.51105 -12.44241 -12.37189 -12.21942 -11.96029 -11.93448 -11.70240 -11.59645 -11.50714 -11.44244 -11.38524 -11.09547 -10.57466 -10.54055 -10.49919 -10.18589 -9.50733 -8.63563 -6.33479 1.54143 1.58337 1.62605 1.80730 2.09199 2.59846 2.80093 2.92349 3.20492 3.54217 3.81450 3.84901 3.91118 3.92905 3.98030 4.07013 4.11546 4.15889 4.29371 4.32958 4.43681 4.47086 4.54068 4.57453 4.64091 4.71621 4.73747 4.77957 4.84981 4.93881 4.96191 5.02129 5.07818 5.10129 5.12364 5.17156 5.23318 5.26970 5.29632 5.35362 5.52087 5.56780 5.65695 5.93851 6.06126 6.23833 6.43139 6.62128 6.90558 7.48912 7.49563 8.76725 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.002756 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.724715 B =10156.920110 C =10691.959461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.045 4.045 3 Si 1.116 2.884 4 H -0.290 1.290 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.601 4.601 8 H 0.060 0.940 9 C 0.016 3.984 10 C -0.066 4.066 11 C -0.111 4.111 12 C 0.120 3.880 13 N -0.626 5.626 14 C 0.704 3.296 15 O -0.634 6.634 16 N -0.735 5.735 17 C 0.166 3.834 18 H 0.067 0.933 19 C -0.116 4.116 20 C -0.149 4.149 21 C 0.055 3.945 22 O -0.401 6.401 23 C 0.078 3.922 24 C -0.159 4.159 25 C 0.138 3.862 26 C -0.122 4.122 27 H 0.252 0.748 28 H -0.019 1.019 29 H -0.021 1.021 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.406 0.594 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.771 -18.806 -11.249 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.242 4.242 3 Si 0.937 3.063 4 H -0.216 1.216 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.639 4.639 8 H 0.078 0.922 9 C -0.021 4.021 10 C -0.085 4.085 11 C -0.150 4.150 12 C -0.003 4.003 13 N -0.362 5.362 14 C 0.406 3.594 15 O -0.516 6.516 16 N -0.393 5.393 17 C 0.062 3.938 18 H 0.085 0.915 19 C -0.154 4.154 20 C -0.187 4.187 21 C -0.021 4.021 22 O -0.320 6.320 23 C 0.000 4.000 24 C -0.198 4.198 25 C 0.015 3.985 26 C -0.161 4.161 27 H 0.062 0.938 28 H 0.000 1.000 29 H -0.003 1.003 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.245 0.755 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.173 -17.842 -11.208 25.965 hybrid contribution -0.542 -1.181 0.444 1.373 sum 14.631 -19.023 -10.764 26.302 Atomic orbital electron populations 1.70926 1.08242 1.29682 1.49500 1.27423 0.96561 1.07034 0.93154 0.82960 0.74107 0.71097 0.78152 1.21608 1.19300 1.19051 1.22447 0.94856 0.92780 1.53849 0.92158 1.19198 0.94752 0.94780 0.93336 1.20910 0.96776 0.92956 0.97807 1.21761 0.97844 0.98546 0.96832 1.21792 0.94001 0.81773 1.02725 1.47379 1.49443 1.12351 1.27053 1.16010 0.79531 0.83405 0.80495 1.90841 1.55888 1.28053 1.76806 1.45447 1.54388 1.19579 1.19883 1.19967 0.95870 0.89399 0.88608 0.91477 1.21568 0.95244 0.99220 0.99412 1.21855 1.03358 0.97006 0.96482 1.23167 0.82269 0.99394 0.97238 1.87454 1.23004 1.77513 1.44069 1.22163 0.94652 0.95644 0.87524 1.21524 0.98615 1.01297 0.98402 1.21396 0.91823 0.98501 0.86762 1.21943 0.97868 0.94706 1.01566 0.93818 1.00030 1.00296 0.91829 0.93955 0.90618 0.89672 0.88343 0.75506 0.90305 0.89677 0.91753 0.87961 0.92041 0.88171 0.91994 0.89146 0.93208 0.91353 0.90243 0.90154 0.90958 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.21 13.65 21.45 0.29 -58.92 16 2 C -0.05 -2.59 5.46 84.65 0.46 -2.13 16 3 Si 1.12 49.31 29.90 68.60 2.05 51.37 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.60 -32.99 8.39 25.60 0.21 -32.78 16 8 H 0.06 3.12 7.06 -2.91 -0.02 3.10 16 9 C 0.02 0.83 3.76 29.85 0.11 0.95 16 10 C -0.07 -2.54 2.10 -10.77 -0.02 -2.57 16 11 C -0.11 -3.72 5.19 30.67 0.16 -3.56 16 12 C 0.12 2.92 6.43 86.36 0.56 3.47 16 13 N -0.63 -17.68 2.97 -836.88 -2.49 -20.16 16 14 C 0.70 20.85 8.12 179.06 1.45 22.31 16 15 O -0.63 -23.27 15.40 -3.98 -0.06 -23.33 16 16 N -0.74 -16.19 4.92 -465.88 -2.29 -18.48 16 17 C 0.17 3.25 2.07 43.33 0.09 3.34 16 18 H 0.07 1.56 6.93 -2.38 -0.02 1.54 16 19 C -0.12 -1.49 5.07 30.25 0.15 -1.34 16 20 C -0.15 -1.49 5.33 30.12 0.16 -1.33 16 21 C 0.05 0.62 6.67 72.26 0.48 1.10 16 22 O -0.40 -7.13 10.17 -143.46 -1.46 -8.59 16 23 C 0.08 1.37 6.38 72.36 0.46 1.83 16 24 C -0.16 -3.36 4.93 28.90 0.14 -3.22 16 25 C 0.14 4.09 6.41 86.36 0.55 4.64 16 26 C -0.12 -4.18 5.36 30.67 0.16 -4.01 16 27 H 0.25 16.13 7.22 -92.71 -0.67 15.46 16 28 H -0.02 -1.03 8.01 -2.38 -0.02 -1.05 16 29 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.68 6.91 -2.39 -0.02 2.66 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.10 1.80 5.56 -2.38 -0.01 1.79 16 35 H 0.41 7.05 6.06 -92.70 -0.56 6.48 16 36 H 0.08 1.02 7.82 -2.39 -0.02 1.00 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.73 6.83 -2.38 -0.02 0.71 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.96 6.98 -2.38 -0.02 0.95 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.32 8.03 -2.38 -0.02 1.30 16 45 H 0.07 1.50 8.13 -2.38 -0.02 1.48 16 46 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.08 2.51 7.04 -2.39 -0.02 2.49 16 48 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -72.74 370.15 1.65 -71.09 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.46 Total: 20.33 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.14 Total: -13.30 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -4.49 Total: -97.56 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.52 Total: -31.92 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.37 kcal Total: -72.74 1.65 -71.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335440095.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.652 kcal (2) G-P(sol) polarization free energy of solvation -72.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds