Wall clock time and date at job start Fri Apr 10 2020 22:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00071 * 2 1 4 4 H 1.48507 * 109.46818 * 269.99612 * 3 2 1 5 5 H 1.48497 * 109.47252 * 29.99572 * 3 2 1 6 6 H 1.48503 * 109.47392 * 149.99787 * 3 2 1 7 7 C 1.37881 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47333 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47520 * 179.97438 * 10 9 7 12 12 C 1.34770 * 120.00136 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00262 * 354.92078 * 12 11 10 14 14 N 1.34777 * 120.00033 * 174.91416 * 12 11 10 15 15 C 1.47151 * 120.90947 * 4.69910 * 14 12 11 16 16 C 1.52906 * 108.40390 * 230.20804 * 15 14 12 17 17 O 1.42816 * 109.26377 * 308.16414 * 16 15 14 18 18 C 1.43889 * 114.02430 * 63.69390 * 17 16 15 19 19 C 1.46996 * 120.91029 * 184.97885 * 14 12 11 20 20 C 1.54828 * 107.01728 * 50.83232 * 18 17 16 21 21 C 1.50189 * 109.19699 * 43.70389 * 20 18 17 22 22 C 1.54322 * 112.84623 * 94.11786 * 21 20 18 23 23 C 1.53983 * 112.76368 * 318.04847 * 22 21 20 24 24 C 1.50513 * 112.02941 * 318.60542 * 23 22 21 25 25 C 1.45947 * 111.63233 * 173.09250 * 18 17 16 26 26 H 0.97003 * 119.99789 * 0.02562 * 1 2 3 27 27 H 1.09010 * 109.47083 * 59.99866 * 9 7 2 28 28 H 1.08995 * 109.47090 * 299.99914 * 9 7 2 29 29 H 1.09000 * 109.46735 * 60.00155 * 10 9 7 30 30 H 1.09004 * 109.47465 * 300.00417 * 10 9 7 31 31 H 0.97008 * 119.99834 * 0.02562 * 11 10 9 32 32 H 1.09004 * 109.71622 * 349.93629 * 15 14 12 33 33 H 1.08997 * 109.72459 * 110.58996 * 15 14 12 34 34 H 1.09001 * 109.58667 * 188.15494 * 16 15 14 35 35 H 1.09005 * 109.37563 * 68.03557 * 16 15 14 36 36 H 1.08996 * 109.67515 * 248.27713 * 19 14 12 37 37 H 1.08997 * 109.67573 * 8.78725 * 19 14 12 38 38 H 1.08997 * 109.51759 * 163.62606 * 20 18 17 39 39 H 1.09006 * 109.51602 * 283.79315 * 20 18 17 40 40 H 1.09003 * 108.80774 * 333.25571 * 21 20 18 41 41 H 1.08994 * 108.81269 * 214.99106 * 21 20 18 42 42 H 1.09000 * 108.82524 * 197.19691 * 22 21 20 43 43 H 1.09003 * 108.82210 * 78.89360 * 22 21 20 44 44 H 1.09007 * 108.96502 * 197.95025 * 23 22 21 45 45 H 1.08999 * 108.97004 * 79.26553 * 23 22 21 46 46 H 1.08994 * 109.70606 * 334.83357 * 24 23 22 47 47 H 1.09004 * 109.73177 * 214.25006 * 24 23 22 48 48 H 1.08996 * 108.76502 * 62.81565 * 25 18 17 49 49 H 1.08998 * 108.76171 * 180.96401 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0018 13 8 3.3990 -6.1001 -0.0914 14 7 1.5168 -7.2628 0.1058 15 6 0.0456 -7.2904 0.1165 16 6 -0.4128 -8.1288 1.3102 17 8 0.2525 -9.3922 1.2819 18 6 1.6806 -9.3058 1.4344 19 6 2.2359 -8.5400 0.2178 20 6 1.9509 -8.4347 2.6855 21 6 1.0161 -8.8477 3.7861 22 6 1.6373 -9.8894 4.7404 23 6 2.4351 -10.9769 3.9975 24 6 1.7354 -11.4345 2.7459 25 6 2.2892 -10.6264 1.5603 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8720 -3.6044 -0.8894 31 1 0.5428 -4.9308 0.0011 32 1 -0.3405 -6.2754 0.2114 33 1 -0.3207 -7.7391 -0.8068 34 1 -1.4905 -8.2833 1.2559 35 1 -0.1650 -7.6074 2.2349 36 1 2.0827 -9.1280 -0.6871 37 1 3.3002 -8.3510 0.3570 38 1 2.9815 -8.5749 3.0112 39 1 1.7848 -7.3854 2.4414 40 1 0.1155 -9.2714 3.3417 41 1 0.7392 -7.9647 4.3619 42 1 0.8387 -10.3657 5.3091 43 1 2.3034 -9.3771 5.4347 44 1 2.5708 -11.8317 4.6602 45 1 3.4139 -10.5784 3.7307 46 1 0.6634 -11.2613 2.8398 47 1 1.9233 -12.4963 2.5864 48 1 2.1097 -11.1842 0.6413 49 1 3.3647 -10.5058 1.6902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335992089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:28 Heat of formation + Delta-G solvation = -79.305907 kcal Electronic energy + Delta-G solvation = -27398.243110 eV Core-core repulsion = 23746.061700 eV Total energy + Delta-G solvation = -3652.181410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.26996 -39.27196 -36.89804 -34.99910 -34.54846 -33.28281 -32.75160 -31.99976 -29.63851 -29.18744 -26.79250 -25.19266 -24.56585 -23.89901 -22.65151 -21.04746 -20.21912 -19.58176 -19.29805 -18.06418 -16.72365 -16.56919 -16.24413 -15.75986 -15.38336 -15.27977 -15.04533 -14.53890 -14.37276 -14.11527 -14.02554 -13.56745 -13.48522 -13.18163 -12.88087 -12.76317 -12.38169 -12.29068 -12.22783 -11.98021 -11.68377 -11.19455 -11.15815 -11.04549 -10.99840 -10.71589 -10.64483 -10.56559 -10.50829 -10.35089 -10.31087 -10.05780 -9.89947 -9.55267 -9.27749 -8.68321 -8.45450 -8.17746 -6.10464 -4.13049 2.77019 3.28983 3.35117 3.39529 3.49038 3.49665 4.17330 4.29055 4.43213 4.47313 4.58114 4.73864 4.80028 4.87843 4.92647 5.05348 5.05461 5.12746 5.15204 5.26781 5.27881 5.42016 5.44341 5.55969 5.60550 5.65737 5.71329 5.74873 5.80192 5.90062 5.99521 6.01481 6.02778 6.11012 6.18489 6.22249 6.32495 6.37674 6.50136 6.74988 6.96435 6.98196 7.11871 7.53555 7.61047 7.88489 8.21985 8.33518 8.89510 8.94933 9.51777 11.01229 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.002807 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.004364 B = 9971.305031 C =10117.055984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.014 3.986 10 C 0.139 3.861 11 N -0.738 5.738 12 C 0.704 3.296 13 O -0.593 6.593 14 N -0.634 5.634 15 C 0.077 3.923 16 C 0.041 3.959 17 O -0.369 6.369 18 C 0.113 3.887 19 C 0.110 3.890 20 C -0.144 4.144 21 C -0.126 4.126 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.111 4.111 25 C -0.104 4.104 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.392 0.608 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 -23.875 5.994 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.394 5.394 12 C 0.405 3.595 13 O -0.472 6.472 14 N -0.373 5.373 15 C -0.047 4.047 16 C -0.037 4.037 17 O -0.288 6.288 18 C 0.073 3.927 19 C -0.014 4.014 20 C -0.181 4.181 21 C -0.164 4.164 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.148 4.148 25 C -0.142 4.142 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.813 -23.854 5.914 24.590 hybrid contribution -0.050 1.357 -0.045 1.358 sum -0.863 -22.497 5.869 23.266 Atomic orbital electron populations 1.69954 1.06091 1.26868 1.50436 1.24994 0.94897 0.99408 0.94984 0.86509 0.79846 0.82969 0.78216 1.20548 1.21173 1.19710 1.21045 0.93272 0.90328 1.51283 0.92216 1.19317 0.94232 0.91092 0.97738 1.21611 0.95676 0.80393 1.00664 1.45699 1.09882 1.05311 1.78482 1.15929 0.85303 0.80292 0.77935 1.90878 1.11987 1.86096 1.58235 1.47181 1.05698 1.05515 1.78934 1.22233 0.80934 1.01688 0.99868 1.22954 0.97427 0.85570 0.97703 1.88082 1.18888 1.28441 1.93431 1.21094 0.81634 0.95753 0.94253 1.22167 0.98371 0.83435 0.97467 1.22011 1.00956 1.00231 0.94940 1.21376 1.00008 0.98517 0.96463 1.21917 0.99292 0.96219 0.97760 1.21386 0.99314 0.98041 0.97040 1.21135 1.01524 0.98534 0.93643 1.20330 1.00017 0.93808 0.99996 0.92852 0.96011 0.96034 0.92860 0.92675 0.77270 0.89274 0.90762 0.87856 0.91635 0.91424 0.88249 0.90987 0.91018 0.90264 0.92526 0.92474 0.92644 0.92475 0.92123 0.90526 0.91908 0.91270 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 3.02 5.62 -4.04 -0.02 3.00 16 11 N -0.74 -13.35 5.47 -65.23 -0.36 -13.71 16 12 C 0.70 12.68 8.11 -86.92 -0.70 11.97 16 13 O -0.59 -12.88 15.83 5.29 0.08 -12.79 16 14 N -0.63 -8.74 1.99 -177.88 -0.35 -9.09 16 15 C 0.08 0.82 6.62 -3.73 -0.02 0.80 16 16 C 0.04 0.39 5.80 37.11 0.22 0.60 16 17 O -0.37 -3.82 8.21 -35.23 -0.29 -4.11 16 18 C 0.11 1.14 0.75 -92.42 -0.07 1.08 16 19 C 0.11 1.34 5.34 -3.20 -0.02 1.32 16 20 C -0.14 -1.57 3.86 -27.17 -0.10 -1.67 16 21 C -0.13 -1.20 3.99 -27.44 -0.11 -1.31 16 22 C -0.11 -0.95 5.86 -25.53 -0.15 -1.10 16 23 C -0.12 -0.92 5.35 -27.46 -0.15 -1.06 16 24 C -0.11 -0.86 5.58 -27.56 -0.15 -1.01 16 25 C -0.10 -0.87 4.31 -29.66 -0.13 -1.00 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.39 6.17 5.98 -40.82 -0.24 5.92 16 32 H 0.09 0.92 5.67 -51.93 -0.29 0.62 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.65 5.18 -51.93 -0.27 0.38 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.36 7.09 -51.93 -0.37 0.99 16 38 H 0.07 0.80 7.03 -51.93 -0.37 0.43 16 39 H 0.07 0.95 5.99 -51.93 -0.31 0.64 16 40 H 0.08 0.77 4.79 -51.93 -0.25 0.52 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.48 6.64 -51.93 -0.34 0.13 16 46 H 0.08 0.67 6.28 -51.93 -0.33 0.35 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.63 7.40 -51.93 -0.38 0.24 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -31.75 360.42 -9.93 -41.68 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.19 Total: 2.96 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.97 Total: -1.42 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.03 Total: -48.12 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.21 Total: -16.91 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.75 -9.93 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335992089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.623 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds