Wall clock time and date at job start Fri Apr 10 2020 22:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00071 * 2 1 4 4 H 1.48507 * 109.46818 * 269.99612 * 3 2 1 5 5 H 1.48497 * 109.47252 * 29.99572 * 3 2 1 6 6 H 1.48503 * 109.47392 * 149.99787 * 3 2 1 7 7 C 1.37881 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47333 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47520 * 179.97438 * 10 9 7 12 12 C 1.34770 * 120.00136 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00262 * 354.92078 * 12 11 10 14 14 N 1.34777 * 120.00033 * 174.91416 * 12 11 10 15 15 C 1.47151 * 120.90947 * 4.69910 * 14 12 11 16 16 C 1.52906 * 108.40390 * 230.20804 * 15 14 12 17 17 O 1.42816 * 109.26377 * 308.16414 * 16 15 14 18 18 C 1.43889 * 114.02430 * 63.69390 * 17 16 15 19 19 C 1.46996 * 120.91029 * 184.97885 * 14 12 11 20 20 C 1.54828 * 107.01728 * 50.83232 * 18 17 16 21 21 C 1.50189 * 109.19699 * 43.70389 * 20 18 17 22 22 C 1.54322 * 112.84623 * 94.11786 * 21 20 18 23 23 C 1.53983 * 112.76368 * 318.04847 * 22 21 20 24 24 C 1.50513 * 112.02941 * 318.60542 * 23 22 21 25 25 C 1.45947 * 111.63233 * 173.09250 * 18 17 16 26 26 H 0.97003 * 119.99789 * 0.02562 * 1 2 3 27 27 H 1.09010 * 109.47083 * 59.99866 * 9 7 2 28 28 H 1.08995 * 109.47090 * 299.99914 * 9 7 2 29 29 H 1.09000 * 109.46735 * 60.00155 * 10 9 7 30 30 H 1.09004 * 109.47465 * 300.00417 * 10 9 7 31 31 H 0.97008 * 119.99834 * 0.02562 * 11 10 9 32 32 H 1.09004 * 109.71622 * 349.93629 * 15 14 12 33 33 H 1.08997 * 109.72459 * 110.58996 * 15 14 12 34 34 H 1.09001 * 109.58667 * 188.15494 * 16 15 14 35 35 H 1.09005 * 109.37563 * 68.03557 * 16 15 14 36 36 H 1.08996 * 109.67515 * 248.27713 * 19 14 12 37 37 H 1.08997 * 109.67573 * 8.78725 * 19 14 12 38 38 H 1.08997 * 109.51759 * 163.62606 * 20 18 17 39 39 H 1.09006 * 109.51602 * 283.79315 * 20 18 17 40 40 H 1.09003 * 108.80774 * 333.25571 * 21 20 18 41 41 H 1.08994 * 108.81269 * 214.99106 * 21 20 18 42 42 H 1.09000 * 108.82524 * 197.19691 * 22 21 20 43 43 H 1.09003 * 108.82210 * 78.89360 * 22 21 20 44 44 H 1.09007 * 108.96502 * 197.95025 * 23 22 21 45 45 H 1.08999 * 108.97004 * 79.26553 * 23 22 21 46 46 H 1.08994 * 109.70606 * 334.83357 * 24 23 22 47 47 H 1.09004 * 109.73177 * 214.25006 * 24 23 22 48 48 H 1.08996 * 108.76502 * 62.81565 * 25 18 17 49 49 H 1.08998 * 108.76171 * 180.96401 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0018 13 8 3.3990 -6.1001 -0.0914 14 7 1.5168 -7.2628 0.1058 15 6 0.0456 -7.2904 0.1165 16 6 -0.4128 -8.1288 1.3102 17 8 0.2525 -9.3922 1.2819 18 6 1.6806 -9.3058 1.4344 19 6 2.2359 -8.5400 0.2178 20 6 1.9509 -8.4347 2.6855 21 6 1.0161 -8.8477 3.7861 22 6 1.6373 -9.8894 4.7404 23 6 2.4351 -10.9769 3.9975 24 6 1.7354 -11.4345 2.7459 25 6 2.2892 -10.6264 1.5603 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8720 -3.6044 -0.8894 31 1 0.5428 -4.9308 0.0011 32 1 -0.3405 -6.2754 0.2114 33 1 -0.3207 -7.7391 -0.8068 34 1 -1.4905 -8.2833 1.2559 35 1 -0.1650 -7.6074 2.2349 36 1 2.0827 -9.1280 -0.6871 37 1 3.3002 -8.3510 0.3570 38 1 2.9815 -8.5749 3.0112 39 1 1.7848 -7.3854 2.4414 40 1 0.1155 -9.2714 3.3417 41 1 0.7392 -7.9647 4.3619 42 1 0.8387 -10.3657 5.3091 43 1 2.3034 -9.3771 5.4347 44 1 2.5708 -11.8317 4.6602 45 1 3.4139 -10.5784 3.7307 46 1 0.6634 -11.2613 2.8398 47 1 1.9233 -12.4963 2.5864 48 1 2.1097 -11.1842 0.6413 49 1 3.3647 -10.5058 1.6902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335992089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:27 Heat of formation + Delta-G solvation = -97.882520 kcal Electronic energy + Delta-G solvation = -27399.048652 eV Core-core repulsion = 23746.061700 eV Total energy + Delta-G solvation = -3652.986952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.24800 -40.55126 -37.74666 -36.70622 -35.70404 -34.85795 -33.93772 -32.81623 -31.47336 -30.06445 -28.00242 -26.40450 -25.86285 -24.78477 -23.69195 -22.86800 -21.28285 -20.54725 -20.15440 -19.31752 -18.52115 -17.56408 -17.51018 -16.90715 -16.62751 -16.44356 -16.19942 -15.87869 -15.49931 -15.32799 -15.15663 -14.96130 -14.52383 -14.29854 -13.99640 -13.92159 -13.68977 -13.32231 -13.11188 -13.04452 -12.95176 -12.81752 -12.53409 -12.43999 -12.26745 -11.96334 -11.77415 -11.68745 -11.57081 -11.40722 -11.35134 -11.22272 -11.15726 -11.00159 -10.95538 -10.61554 -10.15554 -9.40668 -8.25190 -6.35443 1.41003 1.41804 1.50675 1.55300 2.05304 2.39601 2.69277 2.90705 3.09709 3.45696 3.66107 3.78708 3.91683 4.03013 4.10900 4.16815 4.26766 4.28970 4.39662 4.40430 4.43311 4.47362 4.49574 4.56810 4.66841 4.70416 4.79868 4.83025 4.90126 4.93998 4.99523 5.10673 5.17476 5.25529 5.28963 5.32102 5.33625 5.37285 5.44198 5.45995 5.49708 5.56478 5.64125 5.75839 5.85160 6.15340 6.15669 6.77124 6.90038 7.33822 7.47722 8.86760 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.002807 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.004364 B = 9971.305031 C =10117.055984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.161 3.839 11 N -0.734 5.734 12 C 0.702 3.298 13 O -0.635 6.635 14 N -0.626 5.626 15 C 0.071 3.929 16 C 0.043 3.957 17 O -0.369 6.369 18 C 0.124 3.876 19 C 0.105 3.895 20 C -0.140 4.140 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.105 4.105 25 C -0.106 4.106 26 H 0.266 0.734 27 H 0.008 0.992 28 H 0.009 0.991 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.404 0.596 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -25.130 6.299 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.011 4.011 10 C 0.036 3.964 11 N -0.390 5.390 12 C 0.403 3.597 13 O -0.517 6.517 14 N -0.363 5.363 15 C -0.052 4.052 16 C -0.034 4.034 17 O -0.288 6.288 18 C 0.084 3.916 19 C -0.019 4.019 20 C -0.178 4.178 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.143 4.143 25 C -0.144 4.144 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.242 0.758 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.150 0.850 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.393 -25.158 6.224 25.954 hybrid contribution 0.074 1.698 -0.146 1.706 sum -1.319 -23.461 6.078 24.271 Atomic orbital electron populations 1.70052 1.07494 1.28023 1.50933 1.25855 0.95806 1.03030 0.94363 0.85451 0.78640 0.78465 0.78534 1.19773 1.20420 1.19103 1.21446 0.93578 0.91869 1.51643 0.92361 1.19107 0.94151 0.91567 0.96312 1.21092 0.94675 0.81063 0.99535 1.45389 1.10343 1.04458 1.78824 1.16019 0.84849 0.81091 0.77692 1.90844 1.13893 1.86843 1.60075 1.47193 1.07164 1.04620 1.77365 1.22513 0.78697 1.02511 1.01459 1.23057 0.98876 0.84954 0.96562 1.88095 1.18668 1.28797 1.93266 1.21040 0.81757 0.96220 0.92554 1.22353 0.97476 0.82860 0.99189 1.21950 1.01053 0.98785 0.95982 1.21321 0.99730 0.98674 0.96119 1.21918 0.99593 0.96120 0.97513 1.21390 0.98886 0.98167 0.97282 1.21102 1.00875 0.99232 0.93049 1.20378 1.00185 0.92858 1.00955 0.92500 0.97371 0.97251 0.93888 0.93909 0.75834 0.88984 0.89102 0.84953 0.92346 0.90144 0.90080 0.91531 0.93761 0.90037 0.93238 0.91563 0.92965 0.91189 0.92545 0.91238 0.90360 0.90405 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.10 13.29 21.45 0.28 -53.82 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.76 9.11 25.60 0.23 -30.53 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.33 5.09 29.85 0.15 1.48 16 10 C 0.16 7.15 5.62 86.38 0.49 7.63 16 11 N -0.73 -26.96 5.47 -478.55 -2.62 -29.57 16 12 C 0.70 25.69 8.11 179.06 1.45 27.14 16 13 O -0.63 -28.34 15.83 -3.98 -0.06 -28.41 16 14 N -0.63 -17.06 1.99 -834.94 -1.66 -18.72 16 15 C 0.07 1.42 6.62 86.22 0.57 1.99 16 16 C 0.04 0.72 5.80 71.95 0.42 1.14 16 17 O -0.37 -6.88 8.21 -148.98 -1.22 -8.10 16 18 C 0.12 2.39 0.75 -11.96 -0.01 2.38 16 19 C 0.10 2.51 5.34 86.66 0.46 2.97 16 20 C -0.14 -3.02 3.86 30.31 0.12 -2.91 16 21 C -0.12 -2.20 3.99 30.14 0.12 -2.08 16 22 C -0.11 -1.73 5.86 31.37 0.18 -1.55 16 23 C -0.12 -1.60 5.35 30.12 0.16 -1.44 16 24 C -0.11 -1.38 5.58 30.06 0.17 -1.21 16 25 C -0.11 -1.60 4.31 28.70 0.12 -1.48 16 26 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.40 12.75 5.98 -92.70 -0.55 12.19 16 32 H 0.09 1.79 5.67 -2.38 -0.01 1.77 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.10 5.18 -2.38 -0.01 1.09 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 2.27 7.09 -2.39 -0.02 2.25 16 38 H 0.07 1.49 7.03 -2.39 -0.02 1.47 16 39 H 0.04 1.20 5.99 -2.38 -0.01 1.18 16 40 H 0.08 1.45 4.79 -2.39 -0.01 1.44 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.06 0.81 6.64 -2.39 -0.02 0.79 16 46 H 0.07 1.04 6.28 -2.39 -0.02 1.03 16 47 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 49 H 0.08 1.21 7.40 -2.39 -0.02 1.19 16 Total: -1.00 -68.25 360.42 2.23 -66.01 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.39 Total: 22.41 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.10 Total: 4.48 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -3.99 Total: -102.11 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.29 Total: -36.51 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.25 2.23 -66.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335992089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.869 kcal (2) G-P(sol) polarization free energy of solvation -68.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds