Wall clock time and date at job start Fri Apr 10 2020 22:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47205 * 274.28301 * 3 2 1 5 5 H 1.48500 * 109.47045 * 34.28782 * 3 2 1 6 6 H 1.48505 * 109.47059 * 154.28412 * 3 2 1 7 7 C 1.37884 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99315 * 352.99212 * 7 2 1 9 9 C 1.50699 * 120.00004 * 173.27131 * 7 2 1 10 10 C 1.53000 * 115.55006 * 301.64420 * 9 7 2 11 11 N 1.46500 * 109.47388 * 294.23355 * 10 9 7 12 12 C 1.34767 * 120.00059 * 184.73569 * 11 10 9 13 13 O 1.21582 * 120.00487 * 5.08390 * 12 11 10 14 14 N 1.34781 * 119.99883 * 185.08734 * 12 11 10 15 15 C 1.46503 * 120.00044 * 185.11926 * 14 12 11 16 16 H 1.08998 * 109.47069 * 330.10808 * 15 14 12 17 17 C 1.53005 * 109.46861 * 90.10775 * 15 14 12 18 18 O 1.42893 * 109.47297 * 65.00035 * 17 15 14 19 19 C 1.53001 * 109.47124 * 210.10504 * 15 14 12 20 20 C 1.53007 * 109.46812 * 62.20528 * 19 15 14 21 21 C 1.54257 * 110.03397 * 289.90194 * 20 19 15 22 22 C 1.54889 * 104.19891 * 217.10614 * 21 20 19 23 23 C 1.54892 * 102.74491 * 37.93964 * 22 21 20 24 24 C 1.53877 * 110.02901 * 172.73308 * 20 19 15 25 25 C 1.52996 * 117.49866 * 155.97604 * 9 7 2 26 26 C 1.53005 * 117.49769 * 87.31610 * 9 7 2 27 27 H 0.97003 * 120.00406 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46922 * 54.23324 * 10 9 7 29 29 H 1.09001 * 109.47213 * 174.23148 * 10 9 7 30 30 H 0.97004 * 119.99649 * 4.73167 * 11 10 9 31 31 H 0.97000 * 120.00042 * 5.12235 * 14 12 11 32 32 H 1.09001 * 109.47013 * 184.99886 * 17 15 14 33 33 H 1.09002 * 109.47266 * 304.99727 * 17 15 14 34 34 H 0.96700 * 114.00221 * 179.97438 * 18 17 15 35 35 H 1.08999 * 109.46756 * 182.20442 * 19 15 14 36 36 H 1.09002 * 109.47023 * 302.20755 * 19 15 14 37 37 H 1.08997 * 110.01506 * 51.34643 * 20 19 15 38 38 H 1.09009 * 110.48458 * 335.78418 * 21 20 19 39 39 H 1.09005 * 110.49138 * 98.42710 * 21 20 19 40 40 H 1.08993 * 110.75471 * 279.63226 * 22 21 20 41 41 H 1.08995 * 110.91798 * 156.32444 * 22 21 20 42 42 H 1.09003 * 110.49052 * 203.37941 * 23 22 21 43 43 H 1.09007 * 110.59610 * 80.79100 * 23 22 21 44 44 H 1.09003 * 110.03083 * 238.57074 * 24 20 19 45 45 H 1.08999 * 110.03179 * 359.95535 * 24 20 19 46 46 H 1.09004 * 117.49788 * 359.97438 * 25 9 7 47 47 H 1.08999 * 117.50012 * 145.01900 * 25 9 7 48 48 H 1.08999 * 117.49471 * 214.98042 * 26 9 7 49 49 H 1.08996 * 117.50217 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4060 2.0988 -1.3962 5 1 1.4947 2.6248 0.7887 6 1 3.5890 1.4158 0.6075 7 6 2.0046 -1.1941 -0.0005 8 1 1.4706 -2.1259 0.1132 9 6 3.5038 -1.1984 -0.1535 10 6 4.0388 -0.5457 -1.4296 11 7 3.6155 -1.3287 -2.5932 12 6 4.0512 -0.9957 -3.8242 13 8 4.8673 -0.1047 -3.9599 14 7 3.5823 -1.6504 -4.9050 15 6 4.1370 -1.3667 -6.2310 16 1 4.4754 -0.3313 -6.2693 17 6 5.3193 -2.3001 -6.4995 18 8 4.8553 -3.6500 -6.5647 19 6 3.0589 -1.5907 -7.2933 20 6 1.9006 -0.6193 -7.0571 21 6 1.1327 -1.0134 -5.7786 22 6 -0.3494 -0.7205 -6.1201 23 6 -0.4492 -1.1500 -7.6049 24 6 0.8948 -0.7061 -8.2184 25 6 4.2664 -2.4058 0.3956 26 6 4.3439 -1.0582 1.1176 27 1 -0.4851 0.8400 0.0004 28 1 3.6462 0.4679 -1.5114 29 1 5.1276 -0.5115 -1.3913 30 1 3.0215 -2.0869 -2.4774 31 1 2.8775 -2.3093 -4.8049 32 1 5.7871 -2.0306 -7.4464 33 1 6.0477 -2.2047 -5.6942 34 1 5.5530 -4.2980 -6.7332 35 1 3.4823 -1.4176 -8.2827 36 1 2.6927 -2.6153 -7.2289 37 1 2.2798 0.3986 -6.9670 38 1 1.2721 -2.0724 -5.5611 39 1 1.4575 -0.4039 -4.9353 40 1 -0.5686 0.3414 -6.0096 41 1 -1.0171 -1.3180 -5.4995 42 1 -1.2790 -0.6402 -8.0946 43 1 -0.5664 -2.2308 -7.6845 44 1 0.7852 0.2699 -8.6912 45 1 1.2323 -1.4397 -8.9506 46 1 3.6837 -3.1968 0.8679 47 1 5.1495 -2.7348 -0.1520 48 1 5.2780 -0.5012 1.0445 49 1 3.8124 -0.9623 2.0643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338068639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:30 Heat of formation + Delta-G solvation = -72.948958 kcal Electronic energy + Delta-G solvation = -27409.146958 eV Core-core repulsion = 23757.241206 eV Total energy + Delta-G solvation = -3651.905752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96080 -38.43030 -37.23726 -36.77951 -34.48150 -33.31957 -32.18266 -31.26356 -28.72146 -28.55152 -26.58790 -24.98399 -24.73957 -21.68879 -21.21890 -20.78687 -20.10771 -19.55082 -19.21753 -17.83910 -17.30659 -16.67620 -16.15766 -15.49710 -15.26103 -15.04458 -14.77079 -14.40000 -14.07183 -13.91648 -13.53970 -13.35154 -13.21948 -13.10284 -12.89117 -12.49897 -12.31027 -12.08222 -11.90440 -11.33801 -11.07405 -11.03815 -10.88684 -10.71837 -10.65956 -10.59155 -10.53411 -10.46380 -10.33778 -10.21517 -10.04603 -9.74058 -9.46942 -9.17209 -8.83088 -8.71529 -8.47272 -8.06152 -6.16918 -4.17887 3.19763 3.31469 3.40433 3.46179 3.73313 4.25710 4.39759 4.49496 4.67433 4.67885 4.70060 4.98667 5.04422 5.15435 5.25041 5.27103 5.33488 5.50047 5.53141 5.59413 5.67538 5.71119 5.72074 5.76627 5.86445 5.90180 5.97973 5.99098 6.03411 6.16670 6.17862 6.26682 6.29388 6.36592 6.40352 6.47333 6.53903 6.54944 6.72967 6.88130 6.96013 7.10256 7.26436 7.50944 7.55655 7.69038 8.42759 8.64012 8.85308 9.17110 9.47211 10.93945 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.004847 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.140444 B = 5774.883556 C = 7151.682879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.084 3.916 3 Si 0.870 3.130 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.253 1.253 7 C -0.488 4.488 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.173 3.827 11 N -0.719 5.719 12 C 0.700 3.300 13 O -0.611 6.611 14 N -0.737 5.737 15 C 0.167 3.833 16 H 0.101 0.899 17 C 0.062 3.938 18 O -0.567 6.567 19 C -0.113 4.113 20 C -0.092 4.092 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.180 4.180 26 C -0.189 4.189 27 H 0.265 0.735 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.403 0.597 31 H 0.399 0.601 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.374 0.626 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -5.144 -15.990 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.119 4.119 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.177 1.177 7 C -0.525 4.525 8 H 0.096 0.904 9 C -0.016 4.016 10 C 0.049 3.951 11 N -0.372 5.372 12 C 0.400 3.600 13 O -0.492 6.492 14 N -0.394 5.394 15 C 0.060 3.940 16 H 0.119 0.881 17 C -0.017 4.017 18 O -0.372 6.372 19 C -0.151 4.151 20 C -0.110 4.110 21 C -0.151 4.151 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.217 4.217 26 C -0.228 4.228 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.237 0.763 31 H 0.235 0.765 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.220 0.780 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.402 -3.905 -15.966 17.302 hybrid contribution 0.387 0.117 0.070 0.410 sum 5.789 -3.787 -15.896 17.336 Atomic orbital electron populations 1.69891 1.06339 1.27215 1.49267 1.24893 0.94487 0.98985 0.93551 0.87017 0.81255 0.83653 0.78270 1.20430 1.22085 1.17675 1.20236 0.86712 0.94602 1.50911 0.90443 1.19607 0.94737 0.97706 0.89599 1.20920 0.96610 0.93859 0.83745 1.44987 1.52637 1.35025 1.04537 1.16050 0.81323 0.81800 0.80844 1.90841 1.38174 1.34375 1.85778 1.45260 1.43026 1.45727 1.05397 1.20874 0.92427 0.98703 0.81965 0.88145 1.22733 0.96825 0.82584 0.99558 1.86477 1.38562 1.16586 1.95591 1.21905 0.95127 1.00491 0.97570 1.21792 0.94944 0.99297 0.95016 1.22528 0.94185 1.01051 0.97373 1.22523 0.97172 1.01249 0.95607 1.22350 0.96919 1.00674 0.96189 1.22211 0.95085 1.00911 0.97492 1.22763 1.01771 0.91868 1.05323 1.23061 1.01227 0.99866 0.98600 0.92509 0.93013 0.93436 0.76283 0.76482 0.93296 0.93222 0.77959 0.91041 0.90425 0.91185 0.91755 0.91088 0.91767 0.91451 0.92230 0.91856 0.92236 0.91956 0.89726 0.90930 0.91184 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 2 C 0.08 2.33 5.46 -17.82 -0.10 2.23 16 3 Si 0.87 21.67 24.67 -169.99 -4.19 17.48 16 4 H -0.28 -7.10 6.96 56.52 0.39 -6.71 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.25 -5.99 6.14 56.52 0.35 -5.65 16 7 C -0.49 -12.79 9.22 -34.44 -0.32 -13.11 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 C -0.02 -0.34 0.84 -155.66 -0.13 -0.47 16 10 C 0.17 3.81 5.07 -4.04 -0.02 3.78 16 11 N -0.72 -14.18 5.49 -65.23 -0.36 -14.54 16 12 C 0.70 13.34 8.52 -86.92 -0.74 12.60 16 13 O -0.61 -13.64 15.88 5.29 0.08 -13.55 16 14 N -0.74 -10.87 3.20 -58.67 -0.19 -11.05 16 15 C 0.17 2.11 2.51 -67.93 -0.17 1.94 16 16 H 0.10 1.43 7.35 -51.93 -0.38 1.05 16 17 C 0.06 0.69 6.88 37.16 0.26 0.94 16 18 O -0.57 -5.84 12.77 -35.23 -0.45 -6.29 16 19 C -0.11 -1.19 3.87 -26.73 -0.10 -1.29 16 20 C -0.09 -1.06 2.91 -89.50 -0.26 -1.32 16 21 C -0.11 -1.51 4.58 -25.08 -0.11 -1.62 16 22 C -0.13 -1.61 6.91 -24.74 -0.17 -1.78 16 23 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 24 C -0.12 -1.20 6.46 -25.61 -0.17 -1.36 16 25 C -0.18 -3.50 9.96 -26.69 -0.27 -3.77 16 26 C -0.19 -3.90 8.73 -26.69 -0.23 -4.13 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.05 1.26 4.21 -51.93 -0.22 1.05 16 29 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16 30 H 0.40 7.51 8.38 -40.82 -0.34 7.16 16 31 H 0.40 5.45 6.50 -40.82 -0.27 5.19 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.37 2.32 9.12 45.56 0.42 2.74 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.85 7.43 -51.93 -0.39 0.47 16 37 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 38 H 0.06 0.81 6.16 -51.92 -0.32 0.49 16 39 H 0.07 1.16 7.68 -51.93 -0.40 0.76 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 46 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -31.34 379.67 -9.15 -40.48 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -7.83 Total: 15.90 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.71 Total: -8.83 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.23 Total: -50.91 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.37 Total: -19.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.19 Total: 17.48 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.34 -9.15 -40.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338068639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.467 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds