Wall clock time and date at job start Fri Apr 10 2020 22:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47205 * 274.28301 * 3 2 1 5 5 H 1.48500 * 109.47045 * 34.28782 * 3 2 1 6 6 H 1.48505 * 109.47059 * 154.28412 * 3 2 1 7 7 C 1.37884 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99315 * 352.99212 * 7 2 1 9 9 C 1.50699 * 120.00004 * 173.27131 * 7 2 1 10 10 C 1.53000 * 115.55006 * 301.64420 * 9 7 2 11 11 N 1.46500 * 109.47388 * 294.23355 * 10 9 7 12 12 C 1.34767 * 120.00059 * 184.73569 * 11 10 9 13 13 O 1.21582 * 120.00487 * 5.08390 * 12 11 10 14 14 N 1.34781 * 119.99883 * 185.08734 * 12 11 10 15 15 C 1.46503 * 120.00044 * 185.11926 * 14 12 11 16 16 H 1.08998 * 109.47069 * 330.10808 * 15 14 12 17 17 C 1.53005 * 109.46861 * 90.10775 * 15 14 12 18 18 O 1.42893 * 109.47297 * 65.00035 * 17 15 14 19 19 C 1.53001 * 109.47124 * 210.10504 * 15 14 12 20 20 C 1.53007 * 109.46812 * 62.20528 * 19 15 14 21 21 C 1.54257 * 110.03397 * 289.90194 * 20 19 15 22 22 C 1.54889 * 104.19891 * 217.10614 * 21 20 19 23 23 C 1.54892 * 102.74491 * 37.93964 * 22 21 20 24 24 C 1.53877 * 110.02901 * 172.73308 * 20 19 15 25 25 C 1.52996 * 117.49866 * 155.97604 * 9 7 2 26 26 C 1.53005 * 117.49769 * 87.31610 * 9 7 2 27 27 H 0.97003 * 120.00406 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46922 * 54.23324 * 10 9 7 29 29 H 1.09001 * 109.47213 * 174.23148 * 10 9 7 30 30 H 0.97004 * 119.99649 * 4.73167 * 11 10 9 31 31 H 0.97000 * 120.00042 * 5.12235 * 14 12 11 32 32 H 1.09001 * 109.47013 * 184.99886 * 17 15 14 33 33 H 1.09002 * 109.47266 * 304.99727 * 17 15 14 34 34 H 0.96700 * 114.00221 * 179.97438 * 18 17 15 35 35 H 1.08999 * 109.46756 * 182.20442 * 19 15 14 36 36 H 1.09002 * 109.47023 * 302.20755 * 19 15 14 37 37 H 1.08997 * 110.01506 * 51.34643 * 20 19 15 38 38 H 1.09009 * 110.48458 * 335.78418 * 21 20 19 39 39 H 1.09005 * 110.49138 * 98.42710 * 21 20 19 40 40 H 1.08993 * 110.75471 * 279.63226 * 22 21 20 41 41 H 1.08995 * 110.91798 * 156.32444 * 22 21 20 42 42 H 1.09003 * 110.49052 * 203.37941 * 23 22 21 43 43 H 1.09007 * 110.59610 * 80.79100 * 23 22 21 44 44 H 1.09003 * 110.03083 * 238.57074 * 24 20 19 45 45 H 1.08999 * 110.03179 * 359.95535 * 24 20 19 46 46 H 1.09004 * 117.49788 * 359.97438 * 25 9 7 47 47 H 1.08999 * 117.50012 * 145.01900 * 25 9 7 48 48 H 1.08999 * 117.49471 * 214.98042 * 26 9 7 49 49 H 1.08996 * 117.50217 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4060 2.0988 -1.3962 5 1 1.4947 2.6248 0.7887 6 1 3.5890 1.4158 0.6075 7 6 2.0046 -1.1941 -0.0005 8 1 1.4706 -2.1259 0.1132 9 6 3.5038 -1.1984 -0.1535 10 6 4.0388 -0.5457 -1.4296 11 7 3.6155 -1.3287 -2.5932 12 6 4.0512 -0.9957 -3.8242 13 8 4.8673 -0.1047 -3.9599 14 7 3.5823 -1.6504 -4.9050 15 6 4.1370 -1.3667 -6.2310 16 1 4.4754 -0.3313 -6.2693 17 6 5.3193 -2.3001 -6.4995 18 8 4.8553 -3.6500 -6.5647 19 6 3.0589 -1.5907 -7.2933 20 6 1.9006 -0.6193 -7.0571 21 6 1.1327 -1.0134 -5.7786 22 6 -0.3494 -0.7205 -6.1201 23 6 -0.4492 -1.1500 -7.6049 24 6 0.8948 -0.7061 -8.2184 25 6 4.2664 -2.4058 0.3956 26 6 4.3439 -1.0582 1.1176 27 1 -0.4851 0.8400 0.0004 28 1 3.6462 0.4679 -1.5114 29 1 5.1276 -0.5115 -1.3913 30 1 3.0215 -2.0869 -2.4774 31 1 2.8775 -2.3093 -4.8049 32 1 5.7871 -2.0306 -7.4464 33 1 6.0477 -2.2047 -5.6942 34 1 5.5530 -4.2980 -6.7332 35 1 3.4823 -1.4176 -8.2827 36 1 2.6927 -2.6153 -7.2289 37 1 2.2798 0.3986 -6.9670 38 1 1.2721 -2.0724 -5.5611 39 1 1.4575 -0.4039 -4.9353 40 1 -0.5686 0.3414 -6.0096 41 1 -1.0171 -1.3180 -5.4995 42 1 -1.2790 -0.6402 -8.0946 43 1 -0.5664 -2.2308 -7.6845 44 1 0.7852 0.2699 -8.6912 45 1 1.2323 -1.4397 -8.9506 46 1 3.6837 -3.1968 0.8679 47 1 5.1495 -2.7348 -0.1520 48 1 5.2780 -0.5012 1.0445 49 1 3.8124 -0.9623 2.0643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338068639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:29 Heat of formation + Delta-G solvation = -95.103078 kcal Electronic energy + Delta-G solvation = -27410.107632 eV Core-core repulsion = 23757.241206 eV Total energy + Delta-G solvation = -3652.866427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30030 -39.63884 -38.70782 -37.84731 -35.58416 -34.94455 -34.28773 -32.39885 -29.73066 -29.52258 -28.36648 -26.82365 -25.66377 -23.26367 -22.51244 -21.81776 -21.32926 -21.05743 -20.50482 -19.28411 -18.34986 -18.27611 -17.45658 -17.11334 -16.70748 -16.15660 -16.00158 -15.76629 -15.58332 -15.13716 -14.90577 -14.86795 -14.46185 -14.34463 -14.12033 -14.07828 -13.81507 -13.47812 -13.02362 -12.81588 -12.62703 -12.32314 -12.16849 -12.07289 -11.96125 -11.91505 -11.68111 -11.58180 -11.48777 -11.47549 -11.29696 -11.17822 -11.03935 -10.85013 -10.70964 -10.37958 -10.15207 -9.56631 -8.32585 -6.33676 1.28874 1.35434 1.44833 1.83159 2.22705 2.32018 2.93675 3.28157 3.46382 3.49691 3.63136 3.74695 3.76292 4.01820 4.06300 4.21191 4.29958 4.38986 4.47487 4.52548 4.53002 4.54511 4.59437 4.64171 4.70102 4.75872 4.79780 4.85644 4.91781 4.94156 5.00085 5.06323 5.07478 5.12917 5.23265 5.26081 5.28079 5.34913 5.48565 5.50841 5.55928 5.62119 5.68471 5.73017 6.13990 6.29792 6.71257 6.93144 7.19015 7.33240 7.66488 8.81618 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.004847 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.140444 B = 5774.883556 C = 7151.682879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.038 3.962 3 Si 0.918 3.082 4 H -0.293 1.293 5 H -0.296 1.296 6 H -0.230 1.230 7 C -0.472 4.472 8 H 0.046 0.954 9 C -0.042 4.042 10 C 0.180 3.820 11 N -0.721 5.721 12 C 0.698 3.302 13 O -0.645 6.645 14 N -0.721 5.721 15 C 0.157 3.843 16 H 0.082 0.918 17 C 0.072 3.928 18 O -0.577 6.577 19 C -0.099 4.099 20 C -0.090 4.090 21 C -0.114 4.114 22 C -0.134 4.134 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.153 4.153 26 C -0.184 4.184 27 H 0.264 0.736 28 H 0.025 0.975 29 H 0.057 0.943 30 H 0.406 0.594 31 H 0.405 0.595 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.394 0.606 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.128 -6.399 -17.742 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.161 4.161 3 Si 0.745 3.255 4 H -0.221 1.221 5 H -0.224 1.224 6 H -0.153 1.153 7 C -0.510 4.510 8 H 0.065 0.935 9 C -0.043 4.043 10 C 0.056 3.944 11 N -0.374 5.374 12 C 0.398 3.602 13 O -0.528 6.528 14 N -0.377 5.377 15 C 0.052 3.948 16 H 0.100 0.900 17 C -0.007 4.007 18 O -0.384 6.384 19 C -0.137 4.137 20 C -0.109 4.109 21 C -0.152 4.152 22 C -0.172 4.172 23 C -0.155 4.155 24 C -0.151 4.151 25 C -0.190 4.190 26 C -0.222 4.222 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.241 0.759 31 H 0.242 0.758 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.243 0.757 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.116 0.884 48 H 0.109 0.891 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.141 -5.209 -17.738 19.818 hybrid contribution -0.160 0.412 0.600 0.745 sum 6.980 -4.797 -17.138 19.116 Atomic orbital electron populations 1.69998 1.07764 1.27675 1.52011 1.25480 0.94881 1.01681 0.94024 0.86250 0.81295 0.80608 0.77297 1.22097 1.22385 1.15284 1.20351 0.88940 0.92940 1.48735 0.93532 1.19455 0.92687 1.01279 0.90884 1.20709 0.96872 0.92686 0.84173 1.44920 1.52898 1.35009 1.04572 1.16188 0.81024 0.81693 0.81326 1.90809 1.39820 1.35913 1.86260 1.45224 1.42449 1.44767 1.05283 1.21121 0.94015 0.98452 0.81188 0.90039 1.22528 0.95183 0.82812 1.00226 1.86423 1.39817 1.16540 1.95662 1.21838 0.93870 1.00151 0.97861 1.21764 0.95669 0.98712 0.94745 1.22487 0.95071 1.00542 0.97081 1.22548 0.96504 1.00467 0.97655 1.22326 0.97715 1.01372 0.94077 1.22183 0.94045 1.01905 0.96961 1.22802 1.01541 0.91013 1.03683 1.23106 1.01229 1.00833 0.97024 0.92724 0.95729 0.92474 0.75867 0.75769 0.90400 0.95328 0.75686 0.88435 0.90002 0.92789 0.91173 0.95000 0.92976 0.92228 0.91173 0.90883 0.91699 0.89910 0.89539 0.88423 0.89070 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 2 C 0.04 2.17 5.46 84.66 0.46 2.63 16 3 Si 0.92 45.57 24.67 68.60 1.69 47.26 16 4 H -0.29 -15.22 6.96 99.48 0.69 -14.52 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.23 -10.44 6.14 99.48 0.61 -9.83 16 7 C -0.47 -25.10 9.22 25.60 0.24 -24.86 16 8 H 0.05 2.72 8.06 -2.91 -0.02 2.69 16 9 C -0.04 -1.83 0.84 -52.93 -0.04 -1.87 16 10 C 0.18 7.84 5.07 86.38 0.44 8.28 16 11 N -0.72 -28.51 5.49 -478.54 -2.63 -31.13 16 12 C 0.70 26.78 8.52 179.06 1.53 28.31 16 13 O -0.64 -29.08 15.88 -3.97 -0.06 -29.14 16 14 N -0.72 -21.11 3.20 -457.81 -1.46 -22.58 16 15 C 0.16 3.80 2.51 44.99 0.11 3.92 16 16 H 0.08 2.31 7.35 -2.39 -0.02 2.30 16 17 C 0.07 1.42 6.88 71.98 0.50 1.92 16 18 O -0.58 -10.19 12.77 -148.98 -1.90 -12.10 16 19 C -0.10 -1.86 3.87 30.60 0.12 -1.74 16 20 C -0.09 -1.99 2.91 -10.07 -0.03 -2.02 16 21 C -0.11 -3.08 4.58 31.67 0.14 -2.93 16 22 C -0.13 -3.42 6.91 31.89 0.22 -3.20 16 23 C -0.12 -2.24 6.83 31.67 0.22 -2.02 16 24 C -0.11 -2.00 6.46 31.32 0.20 -1.80 16 25 C -0.15 -5.57 9.96 30.62 0.30 -5.26 16 26 C -0.18 -7.11 8.73 30.62 0.27 -6.84 16 27 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.02 1.21 4.21 -2.38 -0.01 1.20 16 29 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 30 H 0.41 15.24 8.38 -92.71 -0.78 14.46 16 31 H 0.40 10.93 6.50 -92.71 -0.60 10.33 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.39 3.64 9.12 -74.06 -0.68 2.97 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.53 7.43 -2.39 -0.02 1.52 16 37 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 38 H 0.07 1.76 6.16 -2.38 -0.01 1.75 16 39 H 0.03 1.09 7.68 -2.38 -0.02 1.07 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.16 7.67 -2.39 -0.02 1.14 16 46 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 47 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 48 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 49 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -69.37 379.67 -0.60 -69.97 By element: Atomic # 1 Polarization: 42.78 SS G_CDS: -1.21 Total: 41.57 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 4.67 Total: -7.50 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -3.79 Total: -110.07 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.97 Total: -41.24 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.69 Total: 47.26 kcal Total: -69.37 -0.60 -69.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338068639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.130 kcal (2) G-P(sol) polarization free energy of solvation -69.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds