Wall clock time and date at job start Fri Apr 10 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00031 * 2 1 4 4 H 1.48500 * 109.46921 * 239.99685 * 3 2 1 5 5 H 1.48497 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46826 * 119.99472 * 3 2 1 7 7 C 1.37879 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99850 * 173.56553 * 7 2 1 9 9 C 1.50704 * 120.00108 * 353.55801 * 7 2 1 10 10 C 1.52992 * 115.54770 * 85.40902 * 9 7 2 11 11 N 1.46500 * 109.47387 * 65.13965 * 10 9 7 12 12 C 1.34779 * 120.00236 * 178.28629 * 11 10 9 13 13 O 1.21583 * 120.00125 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99769 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99594 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.47725 * 34.99882 * 15 14 12 17 17 C 1.53001 * 109.47044 * 274.99647 * 15 14 12 18 18 O 1.42899 * 109.47387 * 295.00330 * 17 15 14 19 19 C 1.52999 * 109.47028 * 155.00079 * 15 14 12 20 20 C 1.52999 * 109.46906 * 294.99505 * 19 15 14 21 21 C 1.54900 * 110.75540 * 174.99972 * 20 19 15 22 22 C 1.54260 * 104.31064 * 156.32458 * 21 20 19 23 23 C 1.53874 * 106.60362 * 336.32232 * 22 21 20 24 24 C 1.54267 * 106.59447 * 0.02562 * 23 22 21 25 25 C 1.52996 * 117.49675 * 231.07757 * 9 7 2 26 26 C 1.53001 * 117.49985 * 299.73762 * 9 7 2 27 27 H 0.97001 * 120.00021 * 5.07847 * 1 2 3 28 28 H 1.09006 * 109.47342 * 305.13880 * 10 9 7 29 29 H 1.09000 * 109.47248 * 185.14217 * 10 9 7 30 30 H 0.97000 * 119.99885 * 358.28467 * 11 10 9 31 31 H 0.97000 * 120.00352 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.47255 * 55.00349 * 17 15 14 33 33 H 1.09001 * 109.47285 * 175.00019 * 17 15 14 34 34 H 0.96698 * 114.00493 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.47081 * 174.99634 * 19 15 14 36 36 H 1.08995 * 109.47517 * 55.00009 * 19 15 14 37 37 H 1.08996 * 110.81549 * 51.66731 * 20 19 15 38 38 H 1.09004 * 110.48311 * 37.57990 * 21 20 19 39 39 H 1.08999 * 110.48663 * 275.06923 * 21 20 19 40 40 H 1.08995 * 110.03653 * 95.61235 * 22 21 20 41 41 H 1.09008 * 110.03227 * 217.03944 * 22 21 20 42 42 H 1.09000 * 110.02980 * 119.28067 * 23 22 21 43 43 H 1.08995 * 110.03487 * 240.66824 * 23 22 21 44 44 H 1.09010 * 110.48756 * 142.28822 * 24 23 22 45 45 H 1.09001 * 110.48758 * 264.79234 * 24 23 22 46 46 H 1.09007 * 117.49395 * 215.00370 * 25 9 7 47 47 H 1.08999 * 117.50150 * 0.02562 * 25 9 7 48 48 H 1.09000 * 117.49866 * 359.97438 * 26 9 7 49 49 H 1.08995 * 117.49469 * 144.97368 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1043 9 6 1.2581 -2.4950 0.1475 10 6 0.7022 -3.0870 -1.1491 11 7 1.8113 -3.4600 -2.0305 12 6 1.5603 -4.0372 -3.2223 13 8 0.4132 -4.2479 -3.5662 14 7 2.5807 -4.3809 -4.0329 15 6 2.3077 -5.0078 -5.3286 16 1 1.3919 -4.5914 -5.7480 17 6 2.1422 -6.5171 -5.1401 18 8 3.3796 -7.0808 -4.7005 19 6 3.4739 -4.7377 -6.2815 20 6 3.5612 -3.2374 -6.5682 21 6 4.8073 -2.9148 -7.4300 22 6 4.4551 -1.5843 -8.1266 23 6 2.9191 -1.4977 -8.1584 24 6 2.3915 -2.7785 -7.4794 25 6 1.7469 -3.4728 1.2180 26 6 0.4415 -2.7006 1.4250 27 1 -0.4850 0.8368 -0.0744 28 1 0.0755 -2.3470 -1.6470 29 1 0.1075 -3.9711 -0.9193 30 1 2.7264 -3.2916 -1.7564 31 1 3.4958 -4.2125 -3.7588 32 1 1.3708 -6.7076 -4.3940 33 1 1.8519 -6.9718 -6.0872 34 1 3.3482 -8.0370 -4.5598 35 1 3.3128 -5.2772 -7.2149 36 1 4.4034 -5.0748 -5.8229 37 1 3.5749 -2.6659 -5.6403 38 1 4.9741 -3.6994 -8.1681 39 1 5.6871 -2.7935 -6.7982 40 1 4.8646 -0.7471 -7.5615 41 1 4.8504 -1.5785 -9.1424 42 1 2.5832 -0.6186 -7.6085 43 1 2.5691 -1.4491 -9.1895 44 1 1.5069 -2.5570 -6.8822 45 1 2.1659 -3.5406 -8.2254 46 1 1.6724 -4.5379 0.9983 47 1 2.6080 -3.1750 1.8161 48 1 0.4445 -1.8951 2.1593 49 1 -0.4918 -3.2572 1.3415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338068640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:32 Heat of formation + Delta-G solvation = -84.753387 kcal Electronic energy + Delta-G solvation = -26715.303609 eV Core-core repulsion = 23062.885978 eV Total energy + Delta-G solvation = -3652.417630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.74647 -38.39611 -37.13994 -36.54665 -34.50838 -33.18706 -31.95182 -31.24153 -28.84832 -28.49791 -26.06754 -25.06347 -24.80962 -21.46107 -21.10729 -20.38217 -20.15360 -19.73655 -19.32748 -17.86567 -17.24839 -16.32854 -15.85015 -15.69170 -15.22142 -14.84845 -14.64472 -14.26947 -14.11719 -13.94121 -13.66250 -13.47298 -13.23789 -13.15712 -12.60478 -12.22162 -11.93111 -11.74968 -11.66321 -11.54256 -11.31842 -11.11963 -10.98049 -10.90237 -10.67426 -10.54456 -10.52923 -10.49415 -10.46798 -10.24268 -10.00369 -9.67009 -9.45635 -8.94187 -8.73122 -8.46897 -8.21897 -7.90640 -6.05203 -4.13583 3.28040 3.30171 3.34109 3.35450 3.85259 4.30409 4.37044 4.42687 4.56197 4.62390 4.85015 5.00642 5.14664 5.22485 5.23116 5.34273 5.37766 5.40629 5.49256 5.55095 5.58698 5.64316 5.67883 5.78140 5.82966 5.89497 5.95943 6.06257 6.09091 6.13306 6.21409 6.33341 6.37821 6.43435 6.50751 6.63842 6.72710 6.90079 6.92051 7.11705 7.39441 7.46807 7.51138 7.56074 7.68994 7.83759 8.37198 8.75026 8.86969 9.28921 9.52833 11.02663 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.004129 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.025691 B = 6779.993982 C = 8516.614495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.183 3.817 11 N -0.720 5.720 12 C 0.699 3.301 13 O -0.609 6.609 14 N -0.740 5.740 15 C 0.170 3.830 16 H 0.098 0.902 17 C 0.061 3.939 18 O -0.568 6.568 19 C -0.111 4.111 20 C -0.094 4.094 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.210 4.210 26 C -0.148 4.148 27 H 0.262 0.738 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.395 0.605 31 H 0.395 0.605 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.374 0.626 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 -9.721 -14.168 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.060 3.940 11 N -0.372 5.372 12 C 0.398 3.602 13 O -0.489 6.489 14 N -0.396 5.396 15 C 0.064 3.936 16 H 0.116 0.884 17 C -0.018 4.018 18 O -0.373 6.373 19 C -0.149 4.149 20 C -0.113 4.113 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.248 4.248 26 C -0.186 4.186 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.229 0.771 31 H 0.228 0.772 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.220 0.780 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.057 -9.118 -14.441 18.479 hybrid contribution 0.959 0.556 0.314 1.152 sum 8.016 -8.562 -14.127 18.361 Atomic orbital electron populations 1.69967 1.05871 1.26984 1.48220 1.24973 0.94781 0.98865 0.94341 0.86709 0.79668 0.83296 0.78594 1.20309 1.21296 1.20215 1.20288 0.92740 0.88636 1.52032 0.92328 1.19033 0.98519 0.93855 0.85772 1.20816 0.86661 0.96517 0.90044 1.45134 1.11223 1.63662 1.17218 1.16068 0.84624 0.78637 0.80833 1.90850 1.19965 1.62481 1.75595 1.45053 1.08437 1.66967 1.19102 1.20804 0.99588 0.89771 0.83419 0.88417 1.22740 0.86202 0.94704 0.98156 1.86465 1.34208 1.26290 1.90329 1.21746 0.98765 0.95561 0.98778 1.22240 0.94644 0.95655 0.98751 1.22399 0.97749 0.96970 0.98538 1.22120 0.96031 0.97895 1.00202 1.22119 0.95354 0.98495 1.00348 1.22495 0.98227 0.96930 0.98239 1.23013 0.98603 0.95680 1.07485 1.22487 0.92274 1.01070 1.02785 0.92817 0.91304 0.94896 0.77134 0.77171 0.92918 0.93433 0.78020 0.90899 0.90560 0.90015 0.91822 0.91849 0.91981 0.92262 0.91868 0.92213 0.91428 0.91819 0.91686 0.90436 0.89858 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.44 12.91 55.43 0.72 -23.73 16 2 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.50 -12.91 8.63 -34.44 -0.30 -13.20 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.69 1.38 -155.66 -0.21 0.47 16 10 C 0.18 4.26 5.50 -4.05 -0.02 4.23 16 11 N -0.72 -14.38 5.48 -65.23 -0.36 -14.73 16 12 C 0.70 13.48 8.53 -86.91 -0.74 12.74 16 13 O -0.61 -13.91 16.01 5.29 0.08 -13.82 16 14 N -0.74 -10.84 4.40 -58.68 -0.26 -11.09 16 15 C 0.17 2.15 2.32 -67.93 -0.16 1.99 16 16 H 0.10 1.40 6.90 -51.93 -0.36 1.04 16 17 C 0.06 0.71 6.85 37.16 0.25 0.96 16 18 O -0.57 -6.05 12.83 -35.23 -0.45 -6.50 16 19 C -0.11 -1.12 3.97 -26.73 -0.11 -1.23 16 20 C -0.09 -1.01 2.83 -88.45 -0.25 -1.26 16 21 C -0.12 -1.11 6.27 -25.07 -0.16 -1.27 16 22 C -0.12 -1.18 6.80 -25.62 -0.17 -1.35 16 23 C -0.13 -1.28 6.80 -25.61 -0.17 -1.46 16 24 C -0.12 -1.32 5.68 -24.90 -0.14 -1.46 16 25 C -0.21 -4.43 9.96 -26.69 -0.27 -4.70 16 26 C -0.15 -3.41 9.42 -26.69 -0.25 -3.67 16 27 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 28 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.40 7.27 8.38 -40.82 -0.34 6.92 16 31 H 0.39 5.14 8.62 -40.82 -0.35 4.79 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.37 2.48 9.12 45.56 0.42 2.89 16 35 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 36 H 0.08 0.79 7.73 -51.93 -0.40 0.39 16 37 H 0.08 1.03 7.62 -51.93 -0.40 0.63 16 38 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.86 8.00 -51.92 -0.42 0.44 16 45 H 0.06 0.62 7.95 -51.93 -0.41 0.20 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 48 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 49 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -30.55 395.11 -10.26 -40.82 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -8.13 Total: 14.72 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.79 Total: -7.29 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.10 Total: -49.55 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.37 Total: -20.33 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.55 -10.26 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338068640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.936 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds