Wall clock time and date at job start Fri Apr 10 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00031 * 2 1 4 4 H 1.48500 * 109.46921 * 239.99685 * 3 2 1 5 5 H 1.48497 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46826 * 119.99472 * 3 2 1 7 7 C 1.37879 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99850 * 173.56553 * 7 2 1 9 9 C 1.50704 * 120.00108 * 353.55801 * 7 2 1 10 10 C 1.52992 * 115.54770 * 85.40902 * 9 7 2 11 11 N 1.46500 * 109.47387 * 65.13965 * 10 9 7 12 12 C 1.34779 * 120.00236 * 178.28629 * 11 10 9 13 13 O 1.21583 * 120.00125 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99769 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99594 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.47725 * 34.99882 * 15 14 12 17 17 C 1.53001 * 109.47044 * 274.99647 * 15 14 12 18 18 O 1.42899 * 109.47387 * 295.00330 * 17 15 14 19 19 C 1.52999 * 109.47028 * 155.00079 * 15 14 12 20 20 C 1.52999 * 109.46906 * 294.99505 * 19 15 14 21 21 C 1.54900 * 110.75540 * 174.99972 * 20 19 15 22 22 C 1.54260 * 104.31064 * 156.32458 * 21 20 19 23 23 C 1.53874 * 106.60362 * 336.32232 * 22 21 20 24 24 C 1.54267 * 106.59447 * 0.02562 * 23 22 21 25 25 C 1.52996 * 117.49675 * 231.07757 * 9 7 2 26 26 C 1.53001 * 117.49985 * 299.73762 * 9 7 2 27 27 H 0.97001 * 120.00021 * 5.07847 * 1 2 3 28 28 H 1.09006 * 109.47342 * 305.13880 * 10 9 7 29 29 H 1.09000 * 109.47248 * 185.14217 * 10 9 7 30 30 H 0.97000 * 119.99885 * 358.28467 * 11 10 9 31 31 H 0.97000 * 120.00352 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.47255 * 55.00349 * 17 15 14 33 33 H 1.09001 * 109.47285 * 175.00019 * 17 15 14 34 34 H 0.96698 * 114.00493 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.47081 * 174.99634 * 19 15 14 36 36 H 1.08995 * 109.47517 * 55.00009 * 19 15 14 37 37 H 1.08996 * 110.81549 * 51.66731 * 20 19 15 38 38 H 1.09004 * 110.48311 * 37.57990 * 21 20 19 39 39 H 1.08999 * 110.48663 * 275.06923 * 21 20 19 40 40 H 1.08995 * 110.03653 * 95.61235 * 22 21 20 41 41 H 1.09008 * 110.03227 * 217.03944 * 22 21 20 42 42 H 1.09000 * 110.02980 * 119.28067 * 23 22 21 43 43 H 1.08995 * 110.03487 * 240.66824 * 23 22 21 44 44 H 1.09010 * 110.48756 * 142.28822 * 24 23 22 45 45 H 1.09001 * 110.48758 * 264.79234 * 24 23 22 46 46 H 1.09007 * 117.49395 * 215.00370 * 25 9 7 47 47 H 1.08999 * 117.50150 * 0.02562 * 25 9 7 48 48 H 1.09000 * 117.49866 * 359.97438 * 26 9 7 49 49 H 1.08995 * 117.49469 * 144.97368 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1043 9 6 1.2581 -2.4950 0.1475 10 6 0.7022 -3.0870 -1.1491 11 7 1.8113 -3.4600 -2.0305 12 6 1.5603 -4.0372 -3.2223 13 8 0.4132 -4.2479 -3.5662 14 7 2.5807 -4.3809 -4.0329 15 6 2.3077 -5.0078 -5.3286 16 1 1.3919 -4.5914 -5.7480 17 6 2.1422 -6.5171 -5.1401 18 8 3.3796 -7.0808 -4.7005 19 6 3.4739 -4.7377 -6.2815 20 6 3.5612 -3.2374 -6.5682 21 6 4.8073 -2.9148 -7.4300 22 6 4.4551 -1.5843 -8.1266 23 6 2.9191 -1.4977 -8.1584 24 6 2.3915 -2.7785 -7.4794 25 6 1.7469 -3.4728 1.2180 26 6 0.4415 -2.7006 1.4250 27 1 -0.4850 0.8368 -0.0744 28 1 0.0755 -2.3470 -1.6470 29 1 0.1075 -3.9711 -0.9193 30 1 2.7264 -3.2916 -1.7564 31 1 3.4958 -4.2125 -3.7588 32 1 1.3708 -6.7076 -4.3940 33 1 1.8519 -6.9718 -6.0872 34 1 3.3482 -8.0370 -4.5598 35 1 3.3128 -5.2772 -7.2149 36 1 4.4034 -5.0748 -5.8229 37 1 3.5749 -2.6659 -5.6403 38 1 4.9741 -3.6994 -8.1681 39 1 5.6871 -2.7935 -6.7982 40 1 4.8646 -0.7471 -7.5615 41 1 4.8504 -1.5785 -9.1424 42 1 2.5832 -0.6186 -7.6085 43 1 2.5691 -1.4491 -9.1895 44 1 1.5069 -2.5570 -6.8822 45 1 2.1659 -3.5406 -8.2254 46 1 1.6724 -4.5379 0.9983 47 1 2.6080 -3.1750 1.8161 48 1 0.4445 -1.8951 2.1593 49 1 -0.4918 -3.2572 1.3415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338068640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:32 Heat of formation + Delta-G solvation = -105.231555 kcal Electronic energy + Delta-G solvation = -26716.191609 eV Core-core repulsion = 23062.885978 eV Total energy + Delta-G solvation = -3653.305630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12946 -39.47630 -38.54122 -37.82773 -35.62304 -34.89694 -33.96056 -32.35162 -29.74967 -29.39561 -27.91479 -26.87672 -25.73169 -23.01443 -22.46533 -21.67889 -21.23595 -20.97385 -20.67349 -19.32502 -18.24891 -18.05110 -17.14020 -16.73019 -16.66963 -16.36823 -16.03065 -15.71583 -15.51258 -15.12220 -14.88565 -14.72789 -14.43371 -14.27905 -14.08270 -13.68729 -13.45387 -13.06418 -12.91649 -12.79543 -12.78993 -12.62231 -12.38859 -12.12167 -12.03786 -11.91604 -11.56600 -11.50728 -11.40311 -11.37429 -11.24924 -11.18596 -10.85275 -10.83176 -10.44992 -10.18924 -10.02479 -9.53251 -8.08761 -6.21683 1.42931 1.44107 1.50676 1.89508 2.30191 2.42817 3.19264 3.35189 3.47104 3.56751 3.65288 3.75309 3.83183 4.09140 4.20866 4.26217 4.38552 4.49443 4.57240 4.60127 4.63351 4.64217 4.66683 4.73881 4.75599 4.78712 4.85227 4.93849 4.97485 4.99932 5.04348 5.10321 5.15499 5.26455 5.27369 5.28585 5.36969 5.53411 5.58190 5.60285 5.61984 5.69129 5.76073 5.80656 6.21535 6.38138 6.84781 6.92012 7.28459 7.47406 7.74438 8.98703 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.004129 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.025691 B = 6779.993982 C = 8516.614495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 0.948 3.052 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.007 3.993 10 C 0.202 3.798 11 N -0.717 5.717 12 C 0.696 3.304 13 O -0.647 6.647 14 N -0.721 5.721 15 C 0.163 3.837 16 H 0.078 0.922 17 C 0.069 3.931 18 O -0.575 6.575 19 C -0.096 4.096 20 C -0.095 4.095 21 C -0.113 4.113 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.176 4.176 26 C -0.158 4.158 27 H 0.258 0.742 28 H 0.024 0.976 29 H 0.030 0.970 30 H 0.404 0.596 31 H 0.405 0.595 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.393 0.607 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.064 0.936 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.679 -10.997 -15.361 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.006 3.994 10 C 0.077 3.923 11 N -0.370 5.370 12 C 0.396 3.604 13 O -0.530 6.530 14 N -0.376 5.376 15 C 0.057 3.943 16 H 0.096 0.904 17 C -0.010 4.010 18 O -0.383 6.383 19 C -0.133 4.133 20 C -0.114 4.114 21 C -0.151 4.151 22 C -0.162 4.162 23 C -0.165 4.165 24 C -0.159 4.159 25 C -0.213 4.213 26 C -0.197 4.197 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.239 0.761 31 H 0.241 0.759 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.242 0.758 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.083 0.917 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.670 -10.426 -15.646 21.142 hybrid contribution 0.168 0.898 0.653 1.123 sum 9.838 -9.528 -14.993 20.306 Atomic orbital electron populations 1.70099 1.07265 1.27344 1.49825 1.25687 0.95423 1.01995 0.94399 0.85770 0.78407 0.79548 0.78818 1.19825 1.21727 1.19387 1.20605 0.93041 0.89569 1.50884 0.91937 1.19046 0.99669 0.94441 0.86259 1.20353 0.87012 0.94977 0.89985 1.44924 1.10817 1.63928 1.17355 1.16215 0.84907 0.78384 0.80862 1.90820 1.21903 1.63955 1.76330 1.44952 1.07842 1.65793 1.19038 1.21026 1.00045 0.90583 0.82599 0.90441 1.22540 0.85869 0.93869 0.98700 1.86410 1.33341 1.28180 1.90357 1.21663 0.97559 0.95242 0.98881 1.22200 0.95473 0.95772 0.97944 1.22375 0.96854 0.97255 0.98567 1.22131 0.95102 0.97865 1.01126 1.22139 0.96249 0.97433 1.00724 1.22493 0.97267 0.97815 0.98367 1.22992 0.97367 0.96205 1.04735 1.22430 0.93732 1.01381 1.02124 0.93251 0.95759 0.95173 0.76070 0.75908 0.95749 0.90602 0.75793 0.88687 0.89992 0.92472 0.90149 0.91489 0.92650 0.90634 0.93572 0.90948 0.94264 0.90179 0.89477 0.89542 0.91734 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.10 12.91 21.45 0.28 -51.82 16 2 C 0.03 1.38 5.39 84.66 0.46 1.83 16 3 Si 0.95 42.72 29.55 68.60 2.03 44.75 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.50 -25.99 8.63 25.60 0.22 -25.77 16 8 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 9 C 0.01 0.32 1.38 -52.93 -0.07 0.24 16 10 C 0.20 9.60 5.50 86.38 0.48 10.07 16 11 N -0.72 -28.86 5.48 -478.54 -2.62 -31.48 16 12 C 0.70 27.29 8.53 179.05 1.53 28.82 16 13 O -0.65 -30.54 16.01 -3.98 -0.06 -30.61 16 14 N -0.72 -20.81 4.40 -457.82 -2.02 -22.83 16 15 C 0.16 3.95 2.32 44.99 0.10 4.06 16 16 H 0.08 2.24 6.90 -2.39 -0.02 2.22 16 17 C 0.07 1.48 6.85 71.98 0.49 1.98 16 18 O -0.58 -10.69 12.83 -148.98 -1.91 -12.60 16 19 C -0.10 -1.71 3.97 30.59 0.12 -1.59 16 20 C -0.10 -1.91 2.83 -9.39 -0.03 -1.93 16 21 C -0.11 -1.83 6.27 31.67 0.20 -1.63 16 22 C -0.12 -2.13 6.80 31.32 0.21 -1.91 16 23 C -0.13 -2.52 6.80 31.32 0.21 -2.30 16 24 C -0.12 -2.57 5.68 31.78 0.18 -2.39 16 25 C -0.18 -7.11 9.96 30.62 0.30 -6.80 16 26 C -0.16 -7.33 9.42 30.62 0.29 -7.04 16 27 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 28 H 0.02 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.03 1.43 8.09 -2.39 -0.02 1.41 16 30 H 0.40 14.63 8.38 -92.71 -0.78 13.86 16 31 H 0.41 10.08 8.62 -92.71 -0.80 9.28 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.39 4.07 9.12 -74.06 -0.68 3.39 16 35 H 0.09 1.35 8.00 -2.39 -0.02 1.33 16 36 H 0.08 1.44 7.73 -2.39 -0.02 1.42 16 37 H 0.06 1.42 7.62 -2.39 -0.02 1.41 16 38 H 0.08 1.06 8.05 -2.38 -0.02 1.04 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.04 1.03 8.00 -2.38 -0.02 1.02 16 45 H 0.08 1.41 7.95 -2.39 -0.02 1.39 16 46 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 47 H 0.09 3.35 8.14 -2.39 -0.02 3.34 16 48 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 49 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -67.16 395.11 -0.92 -68.08 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -1.31 Total: 40.88 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.70 Total: -4.36 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -4.36 Total: -106.13 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.97 Total: -43.21 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -67.16 -0.92 -68.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338068640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.156 kcal (2) G-P(sol) polarization free energy of solvation -67.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds