Wall clock time and date at job start Fri Apr 10 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00108 * 2 1 4 4 H 1.48504 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46746 * 299.99409 * 3 2 1 6 6 H 1.48496 * 109.47128 * 59.99783 * 3 2 1 7 7 C 1.37879 * 119.99441 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99575 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00746 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47533 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47258 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47414 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00250 * 179.97438 * 12 11 10 14 14 O 1.21353 * 119.99801 * 0.02562 * 13 12 11 15 15 C 1.49444 * 120.00213 * 179.97438 * 13 12 11 16 16 O 1.21353 * 119.99986 * 0.02562 * 15 13 12 17 17 N 1.34780 * 120.00474 * 179.97438 * 15 13 12 18 18 C 1.46490 * 120.00363 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.47266 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.47400 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47126 * 180.02562 * 20 19 18 22 22 C 1.54961 * 110.92578 * 71.54077 * 21 20 19 23 23 C 1.54270 * 104.16191 * 156.29427 * 22 21 20 24 24 C 1.53869 * 106.63967 * 336.44607 * 23 22 21 25 25 C 1.54268 * 106.60115 * 359.97438 * 24 23 22 26 26 H 0.96999 * 119.99736 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47148 * 59.98904 * 9 7 2 28 28 H 1.09005 * 109.46905 * 299.99917 * 9 7 2 29 29 H 1.08999 * 109.47591 * 59.99839 * 10 9 7 30 30 H 1.09000 * 109.47025 * 299.99504 * 10 9 7 31 31 H 1.09012 * 109.47097 * 59.99673 * 11 10 9 32 32 H 1.08997 * 109.47472 * 300.00224 * 11 10 9 33 33 H 0.96995 * 119.99477 * 0.02562 * 12 11 10 34 34 H 0.97007 * 119.99391 * 0.02562 * 17 15 13 35 35 H 1.08999 * 109.47504 * 60.00267 * 18 17 15 36 36 H 1.09000 * 109.47105 * 299.99936 * 18 17 15 37 37 H 1.09001 * 109.47169 * 60.00313 * 19 18 17 38 38 H 1.09000 * 109.46864 * 299.99909 * 19 18 17 39 39 H 1.08995 * 109.46922 * 59.99869 * 20 19 18 40 40 H 1.09000 * 109.47141 * 299.99866 * 20 19 18 41 41 H 1.09001 * 110.67554 * 308.23161 * 21 20 19 42 42 H 1.08997 * 110.47708 * 37.64024 * 22 21 20 43 43 H 1.09002 * 110.53308 * 274.97416 * 22 21 20 44 44 H 1.09002 * 110.03399 * 217.13605 * 23 22 21 45 45 H 1.08995 * 110.02943 * 95.75505 * 23 22 21 46 46 H 1.08999 * 110.03405 * 119.26051 * 24 23 22 47 47 H 1.09001 * 110.03705 * 240.64196 * 24 23 22 48 48 H 1.08997 * 110.48788 * 142.28685 * 25 24 23 49 49 H 1.09000 * 110.48806 * 264.79985 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0006 13 6 1.9828 -7.3714 0.0015 14 8 0.7897 -7.5930 0.0024 15 6 2.9539 -8.5073 0.0003 16 8 4.1470 -8.2856 -0.0011 17 7 2.5046 -9.7780 0.0017 18 6 3.4565 -10.8915 0.0011 19 6 2.6915 -12.2165 0.0024 20 6 3.6857 -13.3795 0.0011 21 6 2.9206 -14.7044 0.0018 22 6 2.2455 -14.9543 -1.3705 23 6 2.0697 -16.4858 -1.4313 24 6 3.1182 -17.0878 -0.4796 25 6 3.8959 -15.9014 0.1267 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5568 0.8903 29 1 2.8719 -3.6045 0.8905 30 1 2.8717 -3.6044 -0.8895 31 1 0.8531 -5.0451 -0.8886 32 1 0.8537 -5.0446 0.8913 33 1 3.3857 -5.9235 0.0002 34 1 1.5509 -9.9552 0.0032 35 1 4.0844 -10.8333 0.8902 36 1 4.0819 -10.8344 -0.8898 37 1 2.0639 -12.2746 -0.8869 38 1 2.0658 -12.2739 0.8931 39 1 4.3136 -13.3217 0.8901 40 1 4.3110 -13.3220 -0.8898 41 1 2.1826 -14.7223 0.8037 42 1 2.8895 -14.6118 -2.1803 43 1 1.2766 -14.4571 -1.4160 44 1 2.2403 -16.8411 -2.4476 45 1 1.0670 -16.7598 -1.1036 46 1 2.6243 -17.6533 0.3106 47 1 3.7972 -17.7360 -1.0337 48 1 4.1309 -16.0943 1.1735 49 1 4.8080 -15.7136 -0.4397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340372353.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:36 Heat of formation + Delta-G solvation = -122.524173 kcal Electronic energy + Delta-G solvation = -24111.327988 eV Core-core repulsion = 20457.272494 eV Total energy + Delta-G solvation = -3654.055494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60352 -39.03605 -38.48773 -36.20432 -35.49834 -33.50762 -33.14663 -31.24546 -29.55946 -29.09556 -27.27457 -25.73159 -24.01699 -22.52187 -22.05177 -20.78551 -20.64726 -20.43263 -19.96179 -18.31488 -16.93847 -16.49935 -16.33909 -16.18560 -15.79267 -15.54356 -15.24878 -14.86280 -14.66292 -14.43985 -13.96486 -13.85081 -13.70763 -13.45690 -13.06725 -12.68197 -12.32057 -12.13079 -11.88915 -11.80498 -11.78258 -11.68380 -11.53483 -11.44753 -11.08010 -11.01674 -10.93190 -10.87172 -10.84349 -10.76251 -10.58115 -9.90716 -9.78323 -9.47539 -9.37460 -9.12012 -8.97957 -8.38436 -6.03062 -4.05940 1.42668 2.35122 3.23431 3.30079 3.37696 3.41621 3.65609 4.05550 4.12951 4.21470 4.43479 4.48401 4.53277 4.55516 4.74718 4.90372 5.00475 5.07887 5.13422 5.17690 5.19302 5.28262 5.33125 5.33977 5.44736 5.50722 5.50959 5.59384 5.63824 5.69060 5.70194 5.72846 5.80243 5.91869 5.98393 6.00943 6.07957 6.27169 6.53967 6.69216 6.92147 6.95117 7.40814 7.61735 7.72893 7.73117 7.95479 8.05425 8.36798 9.00808 9.58548 11.08274 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.054634 B = 0.001477 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.377732 B =18950.357134 C =19282.646092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.527 6.527 15 C 0.508 3.492 16 O -0.521 6.521 17 N -0.705 5.705 18 C 0.116 3.884 19 C -0.133 4.133 20 C -0.108 4.108 21 C -0.093 4.093 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.121 4.121 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.411 0.589 34 H 0.413 0.587 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.258 -34.038 -0.680 34.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.279 3.721 14 O -0.404 6.404 15 C 0.288 3.712 16 O -0.397 6.397 17 N -0.359 5.359 18 C -0.007 4.007 19 C -0.171 4.171 20 C -0.146 4.146 21 C -0.111 4.111 22 C -0.159 4.159 23 C -0.164 4.164 24 C -0.164 4.164 25 C -0.159 4.159 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.247 0.753 34 H 0.249 0.751 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.117 -33.906 -0.685 34.460 hybrid contribution 0.377 0.929 -0.007 1.002 sum 6.494 -32.977 -0.691 33.618 Atomic orbital electron populations 1.69975 1.06062 1.26595 1.50667 1.25024 0.94854 0.99319 0.95229 0.86522 0.80103 0.83703 0.77591 1.19711 1.20998 1.21002 1.21243 0.93101 0.90877 1.50832 0.92511 1.19039 0.93812 0.90807 0.97729 1.21928 0.99879 0.92953 1.01327 1.21850 0.91745 0.84728 1.02536 1.46072 1.12232 1.05009 1.70981 1.20019 0.88465 0.84542 0.79029 1.90758 1.16016 1.84730 1.48925 1.20347 0.88769 0.84461 0.77604 1.90762 1.16265 1.84815 1.47811 1.45775 1.11684 1.04896 1.73498 1.21501 0.91874 0.84408 1.02896 1.21840 0.98929 0.92997 1.03305 1.21492 0.97602 0.92823 1.02678 1.22166 0.97309 0.93852 0.97809 1.22473 1.00686 0.95629 0.97121 1.22137 0.99096 0.95656 0.99548 1.22128 0.97742 0.97782 0.98705 1.22420 0.98251 0.94452 1.00772 0.92982 0.96185 0.96179 0.92422 0.92413 0.91089 0.91082 0.75305 0.75079 0.90971 0.90984 0.90864 0.90969 0.91427 0.91403 0.90513 0.91486 0.91613 0.91998 0.91974 0.92003 0.92012 0.91747 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.39 5.27 -26.74 -0.14 -2.54 16 11 C 0.11 1.95 5.67 -4.04 -0.02 1.93 16 12 N -0.69 -10.44 5.55 -60.73 -0.34 -10.78 16 13 C 0.50 7.49 7.89 -11.59 -0.09 7.40 16 14 O -0.53 -8.94 16.48 5.49 0.09 -8.85 16 15 C 0.51 6.68 7.89 -11.59 -0.09 6.59 16 16 O -0.52 -7.87 16.48 5.49 0.09 -7.78 16 17 N -0.70 -6.96 5.55 -60.74 -0.34 -7.30 16 18 C 0.12 0.89 5.67 -4.05 -0.02 0.87 16 19 C -0.13 -0.70 5.22 -26.73 -0.14 -0.84 16 20 C -0.11 -0.51 4.72 -26.73 -0.13 -0.64 16 21 C -0.09 -0.44 2.86 -88.59 -0.25 -0.70 16 22 C -0.12 -0.60 5.71 -25.03 -0.14 -0.75 16 23 C -0.13 -0.62 6.80 -25.61 -0.17 -0.79 16 24 C -0.13 -0.59 6.80 -25.62 -0.17 -0.77 16 25 C -0.12 -0.57 6.27 -25.07 -0.16 -0.73 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.41 5.68 7.94 -40.82 -0.32 5.36 16 34 H 0.41 3.62 7.95 -40.82 -0.32 3.29 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.38 7.66 -51.93 -0.40 -0.02 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.33 8.00 -51.93 -0.42 -0.09 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.34 7.95 -51.93 -0.41 -0.07 16 43 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.07 0.32 8.05 -51.93 -0.42 -0.10 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -31.83 400.49 -9.85 -41.68 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -9.02 Total: 0.28 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.09 Total: -3.83 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.06 Total: -44.00 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.18 Total: -16.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.83 -9.85 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340372353.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.847 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds