Wall clock time and date at job start Fri Apr 10 2020 22:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00108 * 2 1 4 4 H 1.48504 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46746 * 299.99409 * 3 2 1 6 6 H 1.48496 * 109.47128 * 59.99783 * 3 2 1 7 7 C 1.37879 * 119.99441 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99575 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00746 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47533 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47258 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47414 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00250 * 179.97438 * 12 11 10 14 14 O 1.21353 * 119.99801 * 0.02562 * 13 12 11 15 15 C 1.49444 * 120.00213 * 179.97438 * 13 12 11 16 16 O 1.21353 * 119.99986 * 0.02562 * 15 13 12 17 17 N 1.34780 * 120.00474 * 179.97438 * 15 13 12 18 18 C 1.46490 * 120.00363 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.47266 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.47400 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47126 * 180.02562 * 20 19 18 22 22 C 1.54961 * 110.92578 * 71.54077 * 21 20 19 23 23 C 1.54270 * 104.16191 * 156.29427 * 22 21 20 24 24 C 1.53869 * 106.63967 * 336.44607 * 23 22 21 25 25 C 1.54268 * 106.60115 * 359.97438 * 24 23 22 26 26 H 0.96999 * 119.99736 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47148 * 59.98904 * 9 7 2 28 28 H 1.09005 * 109.46905 * 299.99917 * 9 7 2 29 29 H 1.08999 * 109.47591 * 59.99839 * 10 9 7 30 30 H 1.09000 * 109.47025 * 299.99504 * 10 9 7 31 31 H 1.09012 * 109.47097 * 59.99673 * 11 10 9 32 32 H 1.08997 * 109.47472 * 300.00224 * 11 10 9 33 33 H 0.96995 * 119.99477 * 0.02562 * 12 11 10 34 34 H 0.97007 * 119.99391 * 0.02562 * 17 15 13 35 35 H 1.08999 * 109.47504 * 60.00267 * 18 17 15 36 36 H 1.09000 * 109.47105 * 299.99936 * 18 17 15 37 37 H 1.09001 * 109.47169 * 60.00313 * 19 18 17 38 38 H 1.09000 * 109.46864 * 299.99909 * 19 18 17 39 39 H 1.08995 * 109.46922 * 59.99869 * 20 19 18 40 40 H 1.09000 * 109.47141 * 299.99866 * 20 19 18 41 41 H 1.09001 * 110.67554 * 308.23161 * 21 20 19 42 42 H 1.08997 * 110.47708 * 37.64024 * 22 21 20 43 43 H 1.09002 * 110.53308 * 274.97416 * 22 21 20 44 44 H 1.09002 * 110.03399 * 217.13605 * 23 22 21 45 45 H 1.08995 * 110.02943 * 95.75505 * 23 22 21 46 46 H 1.08999 * 110.03405 * 119.26051 * 24 23 22 47 47 H 1.09001 * 110.03705 * 240.64196 * 24 23 22 48 48 H 1.08997 * 110.48788 * 142.28685 * 25 24 23 49 49 H 1.09000 * 110.48806 * 264.79985 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0006 13 6 1.9828 -7.3714 0.0015 14 8 0.7897 -7.5930 0.0024 15 6 2.9539 -8.5073 0.0003 16 8 4.1470 -8.2856 -0.0011 17 7 2.5046 -9.7780 0.0017 18 6 3.4565 -10.8915 0.0011 19 6 2.6915 -12.2165 0.0024 20 6 3.6857 -13.3795 0.0011 21 6 2.9206 -14.7044 0.0018 22 6 2.2455 -14.9543 -1.3705 23 6 2.0697 -16.4858 -1.4313 24 6 3.1182 -17.0878 -0.4796 25 6 3.8959 -15.9014 0.1267 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5568 0.8903 29 1 2.8719 -3.6045 0.8905 30 1 2.8717 -3.6044 -0.8895 31 1 0.8531 -5.0451 -0.8886 32 1 0.8537 -5.0446 0.8913 33 1 3.3857 -5.9235 0.0002 34 1 1.5509 -9.9552 0.0032 35 1 4.0844 -10.8333 0.8902 36 1 4.0819 -10.8344 -0.8898 37 1 2.0639 -12.2746 -0.8869 38 1 2.0658 -12.2739 0.8931 39 1 4.3136 -13.3217 0.8901 40 1 4.3110 -13.3220 -0.8898 41 1 2.1826 -14.7223 0.8037 42 1 2.8895 -14.6118 -2.1803 43 1 1.2766 -14.4571 -1.4160 44 1 2.2403 -16.8411 -2.4476 45 1 1.0670 -16.7598 -1.1036 46 1 2.6243 -17.6533 0.3106 47 1 3.7972 -17.7360 -1.0337 48 1 4.1309 -16.0943 1.1735 49 1 4.8080 -15.7136 -0.4397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340372353.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:35 Heat of formation + Delta-G solvation = -142.328396 kcal Electronic energy + Delta-G solvation = -24112.186764 eV Core-core repulsion = 20457.272494 eV Total energy + Delta-G solvation = -3654.914270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.72025 -39.78222 -39.28572 -37.28797 -36.67206 -35.23408 -33.93151 -33.03724 -30.13722 -29.49301 -28.92261 -26.71833 -25.29835 -23.78553 -22.68314 -22.36775 -21.33889 -20.99767 -20.68312 -19.45840 -18.51147 -17.94253 -17.33549 -16.85077 -16.67196 -16.47206 -16.41712 -16.21540 -15.79678 -15.58714 -14.94321 -14.85236 -14.28921 -14.24204 -14.21632 -13.77372 -13.59750 -13.50539 -13.22427 -12.91625 -12.78395 -12.58642 -12.53887 -12.37126 -12.16777 -11.91975 -11.86976 -11.70390 -11.58434 -11.49397 -11.39679 -11.23986 -11.22290 -11.21433 -10.69646 -10.55145 -10.36214 -10.26652 -8.19412 -6.30180 0.29884 1.29189 1.41908 1.42627 1.55527 2.09855 2.41891 2.63203 3.14770 3.40532 3.64306 3.73892 3.83249 4.05028 4.08263 4.08653 4.18164 4.29875 4.48158 4.52578 4.59827 4.66540 4.69451 4.74939 4.80262 4.86237 4.86740 4.91577 4.92187 4.99751 5.08579 5.12910 5.15000 5.17392 5.22799 5.26667 5.32212 5.33933 5.42257 5.52036 5.55048 5.61867 5.70930 5.84735 5.88981 6.23236 6.32607 6.69930 6.86926 6.90398 7.39338 8.92707 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.054634 B = 0.001477 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.377732 B =18950.357134 C =19282.646092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.687 5.687 13 C 0.501 3.499 14 O -0.548 6.548 15 C 0.512 3.488 16 O -0.542 6.542 17 N -0.688 5.688 18 C 0.115 3.885 19 C -0.124 4.124 20 C -0.104 4.104 21 C -0.090 4.090 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.122 4.122 26 H 0.263 0.737 27 H -0.003 1.003 28 H -0.003 1.003 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.419 0.581 34 H 0.420 0.580 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.566 -34.862 -0.619 35.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.014 4.014 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.339 5.339 13 C 0.281 3.719 14 O -0.427 6.427 15 C 0.292 3.708 16 O -0.420 6.420 17 N -0.341 5.341 18 C -0.008 4.008 19 C -0.161 4.161 20 C -0.142 4.142 21 C -0.109 4.109 22 C -0.160 4.160 23 C -0.167 4.167 24 C -0.165 4.165 25 C -0.160 4.160 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.257 0.743 34 H 0.257 0.743 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.435 -34.774 -0.623 35.566 hybrid contribution -0.068 1.101 -0.030 1.103 sum 7.367 -33.674 -0.653 34.476 Atomic orbital electron populations 1.70105 1.07804 1.27701 1.51719 1.25966 0.95729 1.03350 0.94772 0.85401 0.79166 0.78834 0.77650 1.18442 1.20539 1.20547 1.21712 0.93718 0.92138 1.50428 0.91792 1.18942 0.94361 0.92590 0.95465 1.21642 0.98640 0.91907 1.02226 1.21484 0.91596 0.84527 1.02013 1.45890 1.12267 1.04704 1.71032 1.20364 0.88536 0.84837 0.78121 1.90748 1.17044 1.85064 1.49808 1.19944 0.87909 0.84839 0.78067 1.90760 1.16700 1.85082 1.49443 1.45817 1.12560 1.04299 1.71471 1.21682 0.91746 0.84501 1.02829 1.21781 0.98836 0.91701 1.03817 1.21456 0.97435 0.92453 1.02868 1.22136 0.97267 0.93836 0.97647 1.22482 1.00689 0.95653 0.97180 1.22159 0.99171 0.95695 0.99640 1.22145 0.97758 0.97861 0.98741 1.22429 0.98206 0.94394 1.00931 0.92805 0.98493 0.98486 0.91462 0.91456 0.91708 0.91697 0.74349 0.74283 0.90998 0.91066 0.90437 0.90393 0.91164 0.91342 0.90558 0.91644 0.91579 0.91977 0.91982 0.91897 0.91859 0.91504 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.97 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.24 4.97 29.84 0.15 1.38 16 10 C -0.11 -4.09 5.27 30.59 0.16 -3.93 16 11 C 0.13 4.33 5.67 86.38 0.49 4.82 16 12 N -0.69 -20.08 5.55 -464.40 -2.58 -22.66 16 13 C 0.50 14.54 7.89 87.27 0.69 15.23 16 14 O -0.55 -18.20 16.48 -3.26 -0.05 -18.25 16 15 C 0.51 12.83 7.89 87.27 0.69 13.52 16 16 O -0.54 -15.67 16.48 -3.26 -0.05 -15.73 16 17 N -0.69 -12.50 5.55 -464.43 -2.58 -15.08 16 18 C 0.11 1.56 5.67 86.38 0.49 2.05 16 19 C -0.12 -1.06 5.22 30.60 0.16 -0.90 16 20 C -0.10 -0.80 4.72 30.59 0.14 -0.66 16 21 C -0.09 -0.73 2.86 -9.48 -0.03 -0.75 16 22 C -0.12 -1.06 5.71 31.70 0.18 -0.88 16 23 C -0.13 -1.13 6.80 31.32 0.21 -0.92 16 24 C -0.13 -1.07 6.80 31.32 0.21 -0.85 16 25 C -0.12 -1.00 6.27 31.67 0.20 -0.80 16 26 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 27 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 28 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.42 11.02 7.94 -92.71 -0.74 10.28 16 34 H 0.42 6.65 7.95 -92.70 -0.74 5.91 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.63 7.66 -2.39 -0.02 0.62 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.54 8.00 -2.39 -0.02 0.52 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 0.59 7.95 -2.39 -0.02 0.57 16 43 H 0.07 0.56 8.10 -2.39 -0.02 0.54 16 44 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.07 0.55 8.05 -2.39 -0.02 0.53 16 Total: -1.00 -67.35 400.49 0.94 -66.41 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -0.55 Total: 17.80 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 4.44 Total: -2.22 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -4.87 Total: -93.89 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.11 Total: -33.98 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -67.35 0.94 -66.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340372353.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.921 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds