Wall clock time and date at job start Fri Apr 10 2020 22:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00028 * 2 1 4 4 H 1.48498 * 109.47386 * 240.00377 * 3 2 1 5 5 H 1.48499 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46879 * 120.00354 * 3 2 1 7 7 C 1.37879 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99148 * 180.27026 * 7 2 1 9 9 C 1.50697 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46865 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47008 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47203 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00161 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00188 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99879 * 179.97438 * 13 12 11 16 16 C 1.47421 * 125.65089 * 354.92574 * 15 13 12 17 17 C 1.54911 * 104.83158 * 204.09383 * 16 15 13 18 18 C 1.55155 * 101.58292 * 322.99021 * 17 16 15 19 19 C 1.47023 * 125.64647 * 174.61898 * 15 13 12 20 20 H 1.09002 * 109.88045 * 59.55745 * 19 15 13 21 21 C 1.53000 * 109.88427 * 298.39810 * 19 15 13 22 22 C 1.53184 * 109.54046 * 302.15326 * 21 19 15 23 23 C 1.53102 * 109.15910 * 183.24075 * 22 21 19 24 24 O 1.42911 * 109.48447 * 57.47200 * 23 22 21 25 25 C 1.42902 * 114.09776 * 298.89248 * 24 23 22 26 26 C 1.53089 * 109.41890 * 61.15880 * 25 24 23 27 27 H 0.97009 * 119.99767 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47193 * 299.99798 * 9 7 2 29 29 H 1.09000 * 109.47234 * 60.00318 * 9 7 2 30 30 H 1.09001 * 109.46896 * 299.99791 * 10 9 7 31 31 H 1.08997 * 109.47679 * 59.99603 * 10 9 7 32 32 H 1.09001 * 109.47130 * 299.99658 * 11 10 9 33 33 H 1.09000 * 109.47154 * 60.00091 * 11 10 9 34 34 H 0.97008 * 120.00057 * 359.97438 * 12 11 10 35 35 H 1.08997 * 110.36698 * 322.92916 * 16 15 13 36 36 H 1.08995 * 110.36757 * 85.14658 * 16 15 13 37 37 H 1.08995 * 111.00583 * 81.06664 * 17 16 15 38 38 H 1.09005 * 111.00292 * 204.88004 * 17 16 15 39 39 H 1.08991 * 110.72153 * 153.86791 * 18 17 16 40 40 H 1.09006 * 110.71910 * 277.14104 * 18 17 16 41 41 H 1.08999 * 109.54391 * 62.32690 * 21 19 15 42 42 H 1.08999 * 109.52185 * 303.05942 * 22 21 19 43 43 H 1.09001 * 109.52237 * 63.24461 * 22 21 19 44 44 H 1.09002 * 109.40500 * 297.49493 * 23 22 21 45 45 H 1.08996 * 109.48564 * 177.49939 * 23 22 21 46 46 H 1.09004 * 109.48041 * 301.17189 * 25 24 23 47 47 H 1.09003 * 109.47867 * 181.14552 * 25 24 23 48 48 H 1.09000 * 109.52118 * 182.49070 * 26 25 24 49 49 H 1.08998 * 109.52400 * 62.29753 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 0.0039 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4321 -6.1006 0.0007 13 6 1.9828 -7.3713 0.0008 14 8 0.7874 -7.5935 0.0009 15 7 2.8587 -8.3957 0.0009 16 6 4.3240 -8.2734 -0.1051 17 6 4.7956 -9.6357 -0.6720 18 6 3.8289 -10.6200 0.0379 19 6 2.5114 -9.8199 0.1130 20 1 1.8575 -10.1079 -0.7101 21 6 1.8156 -10.0821 1.4502 22 6 2.7325 -9.6494 2.5985 23 6 2.0624 -9.9898 3.9323 24 8 1.7808 -11.3900 3.9806 25 6 0.8896 -11.8416 2.9589 26 6 1.5135 -11.5777 1.5861 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 0.8897 29 1 0.6240 -2.5567 -0.8903 30 1 2.8718 -3.6043 -0.8906 31 1 2.8719 -3.6044 0.8894 32 1 0.8538 -5.0446 0.8904 33 1 0.8532 -5.0451 -0.8896 34 1 3.3858 -5.9234 0.0003 35 1 4.5888 -7.4662 -0.7880 36 1 4.7620 -8.0973 0.8773 37 1 4.6675 -9.6742 -1.7537 38 1 5.8308 -9.8365 -0.3959 39 1 3.6992 -11.5266 -0.5530 40 1 4.1884 -10.8590 1.0389 41 1 0.8848 -9.5166 1.4940 42 1 3.6830 -10.1778 2.5245 43 1 2.9066 -8.5750 2.5404 44 1 1.1324 -9.4286 4.0239 45 1 2.7294 -9.7246 4.7524 46 1 -0.0558 -11.3047 3.0378 47 1 0.7117 -12.9104 3.0780 48 1 0.8165 -11.8809 0.8048 49 1 2.4386 -12.1463 1.4910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346745697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:38 Heat of formation + Delta-G solvation = -117.657837 kcal Electronic energy + Delta-G solvation = -26552.435758 eV Core-core repulsion = 22898.591284 eV Total energy + Delta-G solvation = -3653.844474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78500 -40.22523 -38.66056 -36.91449 -35.34778 -34.78082 -33.22465 -32.18693 -31.96034 -29.67209 -28.44092 -25.84525 -25.08239 -24.54782 -23.52986 -22.66771 -22.29939 -20.91525 -20.08371 -18.92337 -18.46848 -17.72863 -17.20053 -16.91727 -16.66060 -16.49888 -16.30093 -15.77613 -15.70846 -15.47785 -15.28428 -14.79541 -14.32158 -14.14307 -14.05868 -13.74962 -13.64834 -13.47383 -13.36069 -13.02008 -12.88460 -12.71617 -12.56780 -12.41601 -12.36789 -12.06024 -11.75930 -11.69432 -11.68244 -11.57953 -11.47903 -11.28717 -11.13799 -10.99640 -10.58444 -10.55593 -10.22372 -9.46252 -8.19982 -6.31866 1.41092 1.44474 1.52154 1.58249 2.11061 2.41467 2.92020 3.01433 3.13645 3.56793 3.62426 3.74710 3.89360 3.93045 4.06106 4.13950 4.15225 4.19806 4.25993 4.37624 4.42605 4.47436 4.52820 4.62805 4.67785 4.74387 4.79710 4.85333 4.92312 4.92785 4.95227 4.99716 5.00817 5.10173 5.12654 5.14008 5.15144 5.31143 5.38229 5.45086 5.52722 5.54251 5.68959 5.82807 6.06328 6.20711 6.21358 6.84976 6.98585 7.37732 7.55051 8.92085 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.002530 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.490950 B =11065.412029 C =11657.761622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.098 4.098 11 C 0.151 3.849 12 N -0.730 5.730 13 C 0.713 3.287 14 O -0.637 6.637 15 N -0.630 5.630 16 C 0.087 3.913 17 C -0.121 4.121 18 C -0.121 4.121 19 C 0.158 3.842 20 H 0.056 0.944 21 C -0.100 4.100 22 C -0.136 4.136 23 C 0.058 3.942 24 O -0.395 6.395 25 C 0.055 3.945 26 C -0.140 4.140 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.008 1.008 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.408 0.592 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.042 0.958 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.032 0.968 45 H 0.106 0.894 46 H 0.037 0.963 47 H 0.115 0.885 48 H 0.079 0.921 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.280 -27.260 2.366 30.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.136 4.136 11 C 0.027 3.973 12 N -0.386 5.386 13 C 0.415 3.585 14 O -0.519 6.519 15 N -0.367 5.367 16 C -0.035 4.035 17 C -0.159 4.159 18 C -0.159 4.159 19 C 0.054 3.946 20 H 0.074 0.926 21 C -0.120 4.120 22 C -0.173 4.173 23 C -0.018 4.018 24 O -0.315 6.315 25 C -0.021 4.021 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.245 0.755 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.050 0.950 45 H 0.124 0.876 46 H 0.055 0.945 47 H 0.133 0.867 48 H 0.097 0.903 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.296 -27.346 2.491 30.086 hybrid contribution -0.373 1.713 -0.268 1.773 sum 11.923 -25.633 2.223 28.357 Atomic orbital electron populations 1.70116 1.08004 1.27887 1.51599 1.26045 0.95750 1.03624 0.94731 0.85452 0.78178 0.77809 0.79314 1.18937 1.21184 1.18968 1.21645 0.93761 0.91939 1.50623 0.91451 1.18926 0.94401 0.92944 0.95012 1.21573 0.98413 0.91597 1.02049 1.21055 0.91329 0.84714 1.00231 1.45079 1.10668 1.03541 1.79330 1.15687 0.84248 0.80791 0.77806 1.90873 1.16145 1.84524 1.60369 1.47659 1.07191 1.05139 1.76723 1.22609 0.78486 1.00425 1.01932 1.22751 1.00648 0.91990 1.00514 1.22825 0.91944 0.98175 1.02944 1.21517 0.98001 0.79080 0.95981 0.92603 1.21470 0.98430 0.97098 0.94995 1.22131 0.99902 1.01191 0.94121 1.22621 0.99188 0.81712 0.98313 1.87889 1.66820 1.24064 1.52682 1.22719 0.91439 1.01013 0.86940 1.22170 1.03096 0.94602 0.97891 0.92796 0.99061 0.99009 0.91374 0.91411 0.93762 0.93727 0.75515 0.90332 0.90189 0.90578 0.87110 0.88187 0.88836 0.93961 0.88863 0.92570 0.94994 0.87559 0.94460 0.86729 0.90250 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -30.44 9.11 25.60 0.23 -30.20 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.32 4.97 29.85 0.15 1.46 16 10 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 11 C 0.15 5.67 5.67 86.38 0.49 6.16 16 12 N -0.73 -22.00 5.51 -478.54 -2.64 -24.63 16 13 C 0.71 22.94 8.24 179.05 1.47 24.42 16 14 O -0.64 -26.63 15.60 -3.99 -0.06 -26.69 16 15 N -0.63 -14.11 2.31 -805.87 -1.86 -15.96 16 16 C 0.09 1.19 6.47 86.86 0.56 1.75 16 17 C -0.12 -1.03 7.09 31.99 0.23 -0.80 16 18 C -0.12 -1.19 5.16 31.78 0.16 -1.02 16 19 C 0.16 2.99 2.66 45.34 0.12 3.11 16 20 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 21 C -0.10 -2.05 2.00 -10.67 -0.02 -2.07 16 22 C -0.14 -2.49 5.00 30.69 0.15 -2.33 16 23 C 0.06 1.14 6.84 72.02 0.49 1.63 16 24 O -0.40 -8.03 10.77 -148.98 -1.60 -9.63 16 25 C 0.06 0.92 6.84 72.01 0.49 1.41 16 26 C -0.14 -2.09 5.23 30.68 0.16 -1.93 16 27 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.41 9.58 7.08 -92.70 -0.66 8.92 16 35 H 0.08 1.01 7.50 -2.39 -0.02 0.99 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 0.78 5.44 -2.38 -0.01 0.76 16 41 H 0.04 1.25 7.09 -2.39 -0.02 1.23 16 42 H 0.09 1.31 6.01 -2.39 -0.01 1.30 16 43 H 0.06 1.21 7.69 -2.39 -0.02 1.19 16 44 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.09 1.05 6.95 -2.39 -0.02 1.03 16 Total: -1.00 -75.24 378.43 1.73 -73.51 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.26 Total: 16.81 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.32 Total: -1.89 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -4.21 Total: -98.03 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -1.67 Total: -36.32 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -75.24 1.73 -73.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346745697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.151 kcal (2) G-P(sol) polarization free energy of solvation -75.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds