Wall clock time and date at job start Fri Apr 10 2020 22:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99618 * 2 1 4 4 H 1.48500 * 109.47029 * 269.99966 * 3 2 1 5 5 H 1.48497 * 109.47075 * 30.00030 * 3 2 1 6 6 H 1.48501 * 109.46882 * 150.00186 * 3 2 1 7 7 C 1.37872 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00678 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99925 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47382 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47088 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47058 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99760 * 180.02562 * 12 11 10 14 14 O 1.21580 * 120.00034 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99727 * 179.97438 * 13 12 11 16 16 C 1.47424 * 125.64864 * 5.15462 * 15 13 12 17 17 C 1.54912 * 104.83418 * 155.84003 * 16 15 13 18 18 C 1.55153 * 101.58198 * 37.00818 * 17 16 15 19 19 C 1.47017 * 125.65125 * 185.11340 * 15 13 12 20 20 H 1.08999 * 109.88166 * 300.67103 * 19 15 13 21 21 C 1.53005 * 109.88340 * 61.67738 * 19 15 13 22 22 C 1.53174 * 109.54290 * 57.83803 * 21 19 15 23 23 C 1.53091 * 109.16337 * 176.85376 * 22 21 19 24 24 O 1.42905 * 109.41234 * 302.39047 * 23 22 21 25 25 C 1.42902 * 114.09766 * 61.15999 * 24 23 22 26 26 C 1.53096 * 109.41387 * 298.83895 * 25 24 23 27 27 H 0.96998 * 120.00689 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46786 * 59.99846 * 9 7 2 29 29 H 1.09001 * 109.47286 * 300.00190 * 9 7 2 30 30 H 1.09002 * 109.46999 * 59.99743 * 10 9 7 31 31 H 1.09001 * 109.47077 * 300.00332 * 10 9 7 32 32 H 1.08998 * 109.47029 * 59.99893 * 11 10 9 33 33 H 1.09001 * 109.47338 * 300.00055 * 11 10 9 34 34 H 0.96995 * 119.99536 * 359.97438 * 12 11 10 35 35 H 1.09010 * 110.36823 * 274.67583 * 16 15 13 36 36 H 1.08996 * 110.37065 * 36.99496 * 16 15 13 37 37 H 1.08999 * 111.01050 * 155.08775 * 17 16 15 38 38 H 1.09008 * 110.99874 * 278.89335 * 17 16 15 39 39 H 1.09002 * 110.71759 * 206.14175 * 18 17 16 40 40 H 1.08993 * 110.72219 * 82.86476 * 18 17 16 41 41 H 1.09005 * 109.61317 * 297.61907 * 21 19 15 42 42 H 1.09006 * 109.52503 * 296.75675 * 22 21 19 43 43 H 1.08997 * 109.52339 * 56.94130 * 22 21 19 44 44 H 1.08998 * 109.48095 * 182.40898 * 23 22 21 45 45 H 1.09001 * 109.48629 * 62.37023 * 23 22 21 46 46 H 1.09005 * 109.47991 * 178.86236 * 25 24 23 47 47 H 1.08998 * 109.47919 * 58.82548 * 25 24 23 48 48 H 1.09001 * 109.52280 * 297.70609 * 26 25 24 49 49 H 1.08994 * 109.57178 * 177.54438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0025 12 7 2.4325 -6.1006 -0.0031 13 6 1.9833 -7.3712 -0.0042 14 8 0.7879 -7.5934 -0.0052 15 7 2.8591 -8.3956 -0.0053 16 6 4.3243 -8.2734 0.1022 17 6 4.7955 -9.6360 0.6687 18 6 3.8295 -10.6199 -0.0428 19 6 2.5116 -9.8200 -0.1131 20 1 1.8575 -10.1054 0.7108 21 6 1.8125 -10.0856 -1.4480 22 6 2.7265 -9.6555 -2.5995 23 6 2.0521 -9.9969 -3.9308 24 8 1.7725 -11.3976 -3.9760 25 6 0.8848 -11.8488 -2.9512 26 6 1.5123 -11.5817 -1.5805 27 1 -0.4851 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.8728 -3.6046 0.8877 31 1 2.8714 -3.6038 -0.8922 32 1 0.8534 -5.0441 -0.8922 33 1 0.8541 -5.0455 0.8877 34 1 3.3861 -5.9232 -0.0034 35 1 4.7636 -8.0986 -0.8800 36 1 4.5886 -7.4665 0.7858 37 1 5.8307 -9.8370 0.3931 38 1 4.6669 -9.6749 1.7505 39 1 3.6991 -11.5269 0.5476 40 1 4.1898 -10.8583 -1.0434 41 1 0.8809 -9.5214 -1.4917 42 1 2.9006 -8.5808 -2.5445 43 1 3.6772 -10.1835 -2.5267 44 1 2.7166 -9.7321 -4.7533 45 1 1.1211 -9.4374 -4.0208 46 1 0.7083 -12.9181 -3.0679 47 1 -0.0615 -11.3134 -3.0284 48 1 2.4385 -12.1488 -1.4871 49 1 0.8188 -11.8849 -0.7961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346745698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:41 Heat of formation + Delta-G solvation = -96.720139 kcal Electronic energy + Delta-G solvation = -26551.009795 eV Core-core repulsion = 22898.073247 eV Total energy + Delta-G solvation = -3652.936548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.85986 -39.24899 -37.72600 -35.33193 -34.18918 -33.22044 -31.90580 -31.31476 -30.74682 -28.90590 -26.65799 -24.99009 -23.81583 -23.51004 -22.43400 -21.93798 -20.60262 -19.94202 -19.07524 -17.86736 -16.93224 -16.40080 -16.23499 -16.03631 -15.44806 -15.28104 -14.96324 -14.77485 -14.48037 -14.28274 -14.16128 -13.90378 -13.34059 -13.19093 -12.77954 -12.70079 -12.32229 -12.29144 -12.20111 -11.79832 -11.71527 -11.67191 -11.47296 -11.15422 -10.91047 -10.88995 -10.74793 -10.70572 -10.59293 -10.33481 -9.99855 -9.86086 -9.78796 -9.43862 -9.12738 -8.90395 -8.44718 -8.37464 -6.01995 -4.05170 2.65367 3.30341 3.34517 3.36726 3.39420 3.66027 4.01020 4.24261 4.34900 4.44363 4.48544 4.59865 4.63156 4.73058 4.79480 5.00781 5.05816 5.06912 5.14352 5.30462 5.33756 5.35490 5.43440 5.45929 5.52941 5.56453 5.61618 5.63483 5.69582 5.72864 5.78424 5.81220 5.86946 5.99346 6.11078 6.18425 6.32333 6.54752 6.62082 6.85038 6.96918 7.02264 7.14617 7.63597 7.76469 7.96850 8.11179 8.37797 8.76334 9.01528 9.58999 11.09324 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.002529 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.446605 B =11071.070900 C =11664.012464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.740 5.740 13 C 0.719 3.281 14 O -0.589 6.589 15 N -0.636 5.636 16 C 0.098 3.902 17 C -0.131 4.131 18 C -0.132 4.132 19 C 0.165 3.835 20 H 0.073 0.927 21 C -0.103 4.103 22 C -0.145 4.145 23 C 0.060 3.940 24 O -0.385 6.385 25 C 0.061 3.939 26 C -0.148 4.148 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.393 0.607 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.073 0.927 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.665 -26.006 -2.439 27.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.395 5.395 13 C 0.421 3.579 14 O -0.467 6.467 15 N -0.375 5.375 16 C -0.025 4.025 17 C -0.169 4.169 18 C -0.170 4.170 19 C 0.061 3.939 20 H 0.091 0.909 21 C -0.122 4.122 22 C -0.182 4.182 23 C -0.017 4.017 24 O -0.304 6.304 25 C -0.016 4.016 26 C -0.186 4.186 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.226 0.774 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.110 0.890 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.610 -26.054 -2.563 27.559 hybrid contribution 0.792 1.379 0.292 1.617 sum 9.402 -24.675 -2.271 26.503 Atomic orbital electron populations 1.69960 1.06060 1.26694 1.50558 1.25027 0.94852 0.99291 0.95290 0.86586 0.79796 0.83460 0.78095 1.20654 1.21198 1.19908 1.21199 0.92972 0.90945 1.50929 0.92672 1.19024 0.93839 0.90793 0.97676 1.21883 0.99776 0.93340 1.00762 1.21509 0.91293 0.84149 1.01829 1.45431 1.10444 1.04324 1.79262 1.15512 0.84353 0.80110 0.77946 1.90905 1.13706 1.83751 1.58302 1.47625 1.05924 1.05413 1.78501 1.22271 0.81002 0.98572 1.00690 1.22743 0.99488 0.93996 1.00679 1.22828 0.94262 0.98044 1.01864 1.21311 0.96039 0.79576 0.96956 0.90852 1.21562 1.00218 0.96082 0.94341 1.22207 0.99283 1.02057 0.94685 1.22587 0.99620 0.81911 0.97539 1.87905 1.66771 1.24013 1.51736 1.22556 0.92217 0.99929 0.86882 1.22210 1.02050 0.96172 0.98152 0.92915 0.96265 0.96251 0.92826 0.92822 0.91993 0.92013 0.77382 0.91599 0.90856 0.89885 0.90565 0.90114 0.89814 0.89459 0.90965 0.90979 0.89003 0.93147 0.88978 0.93151 0.90850 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.14 2.45 5.67 -4.04 -0.02 2.43 16 12 N -0.74 -11.13 5.51 -65.22 -0.36 -11.49 16 13 C 0.72 11.29 8.24 -86.92 -0.72 10.58 16 14 O -0.59 -11.59 15.60 5.30 0.08 -11.51 16 15 N -0.64 -7.32 2.31 -168.69 -0.39 -7.71 16 16 C 0.10 0.80 6.47 -2.53 -0.02 0.78 16 17 C -0.13 -0.80 7.08 -24.58 -0.17 -0.98 16 18 C -0.13 -0.87 5.13 -24.90 -0.13 -1.00 16 19 C 0.17 1.64 2.67 -66.95 -0.18 1.46 16 20 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 21 C -0.10 -1.04 2.00 -90.44 -0.18 -1.23 16 22 C -0.14 -1.39 4.99 -26.59 -0.13 -1.52 16 23 C 0.06 0.59 6.84 37.20 0.25 0.85 16 24 O -0.39 -4.11 10.77 -35.23 -0.38 -4.49 16 25 C 0.06 0.53 6.84 37.21 0.25 0.78 16 26 C -0.15 -1.20 5.23 -26.59 -0.14 -1.33 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.39 4.88 7.08 -40.82 -0.29 4.59 16 35 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.07 0.57 7.50 -51.93 -0.39 0.18 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.53 5.44 -51.93 -0.28 0.25 16 41 H 0.09 1.19 7.09 -51.93 -0.37 0.82 16 42 H 0.07 0.79 7.69 -51.93 -0.40 0.39 16 43 H 0.07 0.61 6.00 -51.93 -0.31 0.30 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.53 6.94 -51.93 -0.36 0.17 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -33.20 378.40 -10.20 -43.41 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.71 Total: 0.38 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.87 Total: -4.60 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.01 Total: -45.37 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.30 Total: -16.00 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.20 -10.20 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346745698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.312 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds