Wall clock time and date at job start Fri Apr 10 2020 22:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99618 * 2 1 4 4 H 1.48500 * 109.47029 * 269.99966 * 3 2 1 5 5 H 1.48497 * 109.47075 * 30.00030 * 3 2 1 6 6 H 1.48501 * 109.46882 * 150.00186 * 3 2 1 7 7 C 1.37872 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00678 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99925 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47382 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47088 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47058 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99760 * 180.02562 * 12 11 10 14 14 O 1.21580 * 120.00034 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99727 * 179.97438 * 13 12 11 16 16 C 1.47424 * 125.64864 * 5.15462 * 15 13 12 17 17 C 1.54912 * 104.83418 * 155.84003 * 16 15 13 18 18 C 1.55153 * 101.58198 * 37.00818 * 17 16 15 19 19 C 1.47017 * 125.65125 * 185.11340 * 15 13 12 20 20 H 1.08999 * 109.88166 * 300.67103 * 19 15 13 21 21 C 1.53005 * 109.88340 * 61.67738 * 19 15 13 22 22 C 1.53174 * 109.54290 * 57.83803 * 21 19 15 23 23 C 1.53091 * 109.16337 * 176.85376 * 22 21 19 24 24 O 1.42905 * 109.41234 * 302.39047 * 23 22 21 25 25 C 1.42902 * 114.09766 * 61.15999 * 24 23 22 26 26 C 1.53096 * 109.41387 * 298.83895 * 25 24 23 27 27 H 0.96998 * 120.00689 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46786 * 59.99846 * 9 7 2 29 29 H 1.09001 * 109.47286 * 300.00190 * 9 7 2 30 30 H 1.09002 * 109.46999 * 59.99743 * 10 9 7 31 31 H 1.09001 * 109.47077 * 300.00332 * 10 9 7 32 32 H 1.08998 * 109.47029 * 59.99893 * 11 10 9 33 33 H 1.09001 * 109.47338 * 300.00055 * 11 10 9 34 34 H 0.96995 * 119.99536 * 359.97438 * 12 11 10 35 35 H 1.09010 * 110.36823 * 274.67583 * 16 15 13 36 36 H 1.08996 * 110.37065 * 36.99496 * 16 15 13 37 37 H 1.08999 * 111.01050 * 155.08775 * 17 16 15 38 38 H 1.09008 * 110.99874 * 278.89335 * 17 16 15 39 39 H 1.09002 * 110.71759 * 206.14175 * 18 17 16 40 40 H 1.08993 * 110.72219 * 82.86476 * 18 17 16 41 41 H 1.09005 * 109.61317 * 297.61907 * 21 19 15 42 42 H 1.09006 * 109.52503 * 296.75675 * 22 21 19 43 43 H 1.08997 * 109.52339 * 56.94130 * 22 21 19 44 44 H 1.08998 * 109.48095 * 182.40898 * 23 22 21 45 45 H 1.09001 * 109.48629 * 62.37023 * 23 22 21 46 46 H 1.09005 * 109.47991 * 178.86236 * 25 24 23 47 47 H 1.08998 * 109.47919 * 58.82548 * 25 24 23 48 48 H 1.09001 * 109.52280 * 297.70609 * 26 25 24 49 49 H 1.08994 * 109.57178 * 177.54438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0025 12 7 2.4325 -6.1006 -0.0031 13 6 1.9833 -7.3712 -0.0042 14 8 0.7879 -7.5934 -0.0052 15 7 2.8591 -8.3956 -0.0053 16 6 4.3243 -8.2734 0.1022 17 6 4.7955 -9.6360 0.6687 18 6 3.8295 -10.6199 -0.0428 19 6 2.5116 -9.8200 -0.1131 20 1 1.8575 -10.1054 0.7108 21 6 1.8125 -10.0856 -1.4480 22 6 2.7265 -9.6555 -2.5995 23 6 2.0521 -9.9969 -3.9308 24 8 1.7725 -11.3976 -3.9760 25 6 0.8848 -11.8488 -2.9512 26 6 1.5123 -11.5817 -1.5805 27 1 -0.4851 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 2.8728 -3.6046 0.8877 31 1 2.8714 -3.6038 -0.8922 32 1 0.8534 -5.0441 -0.8922 33 1 0.8541 -5.0455 0.8877 34 1 3.3861 -5.9232 -0.0034 35 1 4.7636 -8.0986 -0.8800 36 1 4.5886 -7.4665 0.7858 37 1 5.8307 -9.8370 0.3931 38 1 4.6669 -9.6749 1.7505 39 1 3.6991 -11.5269 0.5476 40 1 4.1898 -10.8583 -1.0434 41 1 0.8809 -9.5214 -1.4917 42 1 2.9006 -8.5808 -2.5445 43 1 3.6772 -10.1835 -2.5267 44 1 2.7166 -9.7321 -4.7533 45 1 1.1211 -9.4374 -4.0208 46 1 0.7083 -12.9181 -3.0679 47 1 -0.0615 -11.3134 -3.0284 48 1 2.4385 -12.1488 -1.4871 49 1 0.8188 -11.8849 -0.7961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346745698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:40 Heat of formation + Delta-G solvation = -117.632585 kcal Electronic energy + Delta-G solvation = -26551.916627 eV Core-core repulsion = 22898.073247 eV Total energy + Delta-G solvation = -3653.843379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.78627 -40.22736 -38.66138 -36.91468 -35.34937 -34.78237 -33.22474 -32.18652 -31.95929 -29.66909 -28.44209 -25.84306 -25.08264 -24.54625 -23.52799 -22.67173 -22.29959 -20.91468 -20.08408 -18.92294 -18.47200 -17.72849 -17.20067 -16.91700 -16.66002 -16.49747 -16.29621 -15.77562 -15.70492 -15.47863 -15.28760 -14.79443 -14.33007 -14.14707 -14.05835 -13.74514 -13.64889 -13.47205 -13.35996 -13.02199 -12.88108 -12.75138 -12.56599 -12.38565 -12.36373 -12.06057 -11.75748 -11.69799 -11.68222 -11.58042 -11.47827 -11.27652 -11.13363 -10.99666 -10.58345 -10.56418 -10.22317 -9.46179 -8.20159 -6.31974 1.41088 1.42761 1.53464 1.58377 2.11165 2.41267 2.92058 3.01514 3.13597 3.57021 3.62601 3.74752 3.89471 3.93082 4.06337 4.14045 4.15310 4.19845 4.25978 4.37641 4.42401 4.47571 4.52865 4.62926 4.67762 4.74407 4.79866 4.85364 4.92320 4.92875 4.95321 4.99791 5.00891 5.10242 5.12785 5.14048 5.15106 5.31194 5.38359 5.45221 5.52828 5.54255 5.68936 5.82842 6.06450 6.20781 6.21341 6.85080 6.98674 7.37720 7.55148 8.92131 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.002529 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.446605 B =11071.070900 C =11664.012464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.098 4.098 11 C 0.151 3.849 12 N -0.730 5.730 13 C 0.713 3.287 14 O -0.637 6.637 15 N -0.630 5.630 16 C 0.087 3.913 17 C -0.121 4.121 18 C -0.121 4.121 19 C 0.158 3.842 20 H 0.056 0.944 21 C -0.100 4.100 22 C -0.136 4.136 23 C 0.058 3.942 24 O -0.396 6.396 25 C 0.055 3.945 26 C -0.140 4.140 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.008 1.008 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.408 0.592 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.042 0.958 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.032 0.968 46 H 0.115 0.885 47 H 0.037 0.963 48 H 0.094 0.906 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.279 -27.285 -2.356 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.136 4.136 11 C 0.027 3.973 12 N -0.386 5.386 13 C 0.415 3.585 14 O -0.519 6.519 15 N -0.367 5.367 16 C -0.035 4.035 17 C -0.159 4.159 18 C -0.159 4.159 19 C 0.054 3.946 20 H 0.074 0.926 21 C -0.120 4.120 22 C -0.173 4.173 23 C -0.018 4.018 24 O -0.315 6.315 25 C -0.021 4.021 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.245 0.755 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.124 0.876 45 H 0.050 0.950 46 H 0.133 0.867 47 H 0.055 0.945 48 H 0.112 0.888 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.299 -27.373 -2.478 30.111 hybrid contribution -0.385 1.719 0.263 1.781 sum 11.914 -25.653 -2.216 28.372 Atomic orbital electron populations 1.70112 1.08002 1.27828 1.51682 1.26039 0.95744 1.03619 0.94754 0.85401 0.78690 0.78189 0.78480 1.19785 1.21047 1.18335 1.21669 0.93758 0.91924 1.50483 0.91458 1.18932 0.94409 0.92957 0.95024 1.21573 0.98412 0.91597 1.02050 1.21056 0.91327 0.84715 1.00231 1.45077 1.10666 1.03540 1.79337 1.15684 0.84246 0.80792 0.77809 1.90871 1.16147 1.84521 1.60368 1.47655 1.07188 1.05131 1.76736 1.22613 0.78490 1.00421 1.01929 1.22756 1.00664 0.92004 1.00510 1.22822 0.91918 0.98174 1.02949 1.21519 0.97962 0.79073 0.96012 0.92589 1.21474 0.98433 0.97087 0.95018 1.22130 0.99904 1.01194 0.94115 1.22622 0.99171 0.81700 0.98342 1.87887 1.67045 1.24020 1.52516 1.22718 0.91486 1.01012 0.86888 1.22171 1.03099 0.94596 0.97904 0.92796 0.99042 0.99006 0.91385 0.91400 0.93755 0.93735 0.75518 0.90176 0.90325 0.87118 0.90580 0.88199 0.88795 0.93961 0.92595 0.88847 0.87570 0.94982 0.86731 0.94462 0.88780 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.29 21.44 0.28 -57.41 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 11 C 0.15 5.67 5.67 86.38 0.49 6.16 16 12 N -0.73 -21.99 5.51 -478.54 -2.64 -24.63 16 13 C 0.71 22.93 8.24 179.06 1.48 24.41 16 14 O -0.64 -26.62 15.60 -3.97 -0.06 -26.68 16 15 N -0.63 -14.10 2.31 -805.88 -1.86 -15.95 16 16 C 0.09 1.19 6.47 86.86 0.56 1.75 16 17 C -0.12 -1.03 7.08 31.99 0.23 -0.80 16 18 C -0.12 -1.18 5.13 31.78 0.16 -1.02 16 19 C 0.16 2.99 2.67 45.34 0.12 3.11 16 20 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 21 C -0.10 -2.05 2.00 -10.68 -0.02 -2.07 16 22 C -0.14 -2.49 4.99 30.68 0.15 -2.34 16 23 C 0.06 1.14 6.84 72.01 0.49 1.63 16 24 O -0.40 -8.03 10.77 -148.98 -1.60 -9.64 16 25 C 0.06 0.92 6.84 72.01 0.49 1.41 16 26 C -0.14 -2.09 5.23 30.68 0.16 -1.93 16 27 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.41 9.58 7.08 -92.71 -0.66 8.92 16 35 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.08 1.01 7.50 -2.39 -0.02 0.99 16 37 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 0.78 5.44 -2.39 -0.01 0.76 16 41 H 0.04 1.25 7.09 -2.38 -0.02 1.23 16 42 H 0.06 1.21 7.69 -2.38 -0.02 1.19 16 43 H 0.09 1.31 6.00 -2.39 -0.01 1.30 16 44 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 1.05 6.94 -2.39 -0.02 1.03 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -75.25 378.40 1.73 -73.52 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.26 Total: 16.69 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.32 Total: -1.85 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -4.21 Total: -97.99 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.67 Total: -36.31 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -75.25 1.73 -73.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346745698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.114 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds