Wall clock time and date at job start Fri Apr 10 2020 22:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 C 1.50709 * 109.46989 * 119.99439 * 2 1 3 5 5 N 1.29023 * 124.91372 * 119.99927 * 4 2 1 6 6 C 1.31784 * 117.12236 * 179.97438 * 5 4 2 7 7 C 1.50706 * 122.74680 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46642 * 295.00158 * 7 6 5 9 9 C 1.52999 * 109.47075 * 55.00168 * 7 6 5 10 10 N 1.46897 * 109.46791 * 175.00243 * 7 6 5 11 11 C 1.46900 * 110.99851 * 154.99783 * 10 7 6 12 12 C 1.52999 * 109.47333 * 179.97438 * 11 10 7 13 13 C 1.52998 * 109.47106 * 300.00563 * 12 11 10 14 14 C 1.53002 * 109.47130 * 59.99814 * 12 11 10 15 15 C 1.52997 * 109.47368 * 180.02562 * 12 11 10 16 16 C 1.50697 * 109.47128 * 179.97438 * 15 12 11 17 17 H 1.08003 * 120.00492 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00000 * 179.97438 * 16 15 12 19 19 N 1.31508 * 119.99969 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99958 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47430 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47263 * 120.00257 * 20 18 16 23 23 H 1.48502 * 109.47254 * 239.99985 * 20 18 16 24 24 C 1.33639 * 114.50230 * 0.02562 * 6 5 4 25 25 S 1.70979 * 124.91513 * 300.00276 * 4 2 1 26 26 H 1.09003 * 109.46619 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47324 * 299.99925 * 1 2 3 28 28 H 1.08997 * 109.46804 * 60.00274 * 1 2 3 29 29 H 1.08993 * 109.47557 * 239.99642 * 2 1 3 30 30 H 1.08996 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46613 * 299.99836 * 3 2 1 32 32 H 1.09001 * 109.47324 * 59.99212 * 3 2 1 33 33 H 1.09000 * 109.46642 * 179.97438 * 9 7 6 34 34 H 1.08999 * 109.47025 * 300.00038 * 9 7 6 35 35 H 1.09001 * 109.46710 * 60.00218 * 9 7 6 36 36 H 1.00899 * 111.00159 * 31.04547 * 10 7 6 37 37 H 1.08999 * 109.47232 * 300.00212 * 11 10 7 38 38 H 1.09000 * 109.46766 * 60.00122 * 11 10 7 39 39 H 1.09004 * 109.47631 * 59.99370 * 13 12 11 40 40 H 1.08998 * 109.47599 * 179.97438 * 13 12 11 41 41 H 1.09008 * 109.46777 * 299.99666 * 13 12 11 42 42 H 1.09009 * 109.46774 * 60.00283 * 14 12 11 43 43 H 1.08997 * 109.47343 * 180.02562 * 14 12 11 44 44 H 1.09000 * 109.47300 * 300.00600 * 14 12 11 45 45 H 1.08998 * 109.46608 * 299.99759 * 15 12 11 46 46 H 1.08995 * 109.47286 * 59.99666 * 15 12 11 47 47 H 0.97007 * 120.00335 * 179.97438 * 19 18 16 48 48 H 1.07997 * 126.03746 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 2.7773 -1.7638 1.2228 6 6 3.1287 -2.2598 2.3921 7 6 3.9956 -3.4847 2.5308 8 1 3.4672 -4.3507 2.1319 9 6 5.2973 -3.2789 1.7535 10 7 4.3027 -3.7091 3.9497 11 6 4.6052 -5.1237 4.2055 12 6 4.9198 -5.3176 5.6901 13 6 6.1284 -4.4604 6.0715 14 6 3.7107 -4.8951 6.5271 15 6 5.2355 -6.7907 5.9565 16 6 5.5460 -6.9815 7.4187 17 1 5.5204 -6.1367 8.0910 18 6 5.8619 -8.2350 7.8986 19 7 5.8927 -9.2638 7.0801 20 14 6.2475 -8.4713 9.7110 21 1 6.1456 -7.1668 10.4131 22 1 5.2782 -9.4283 10.3026 23 1 7.6247 -9.0070 9.8583 24 6 2.6533 -1.5876 3.4448 25 16 1.6976 -0.2368 2.8391 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9565 0.8899 33 1 5.9244 -4.1647 1.8542 34 1 5.0693 -3.1124 0.7007 35 1 5.8255 -2.4129 2.1524 36 1 3.5483 -3.3886 4.5380 37 1 3.7443 -5.7343 3.9334 38 1 5.4669 -5.4244 3.6095 39 1 5.9040 -3.4108 5.8817 40 1 6.3524 -4.5982 7.1293 41 1 6.9899 -4.7614 5.4752 42 1 2.8496 -5.5058 6.2554 43 1 3.9350 -5.0328 7.5849 44 1 3.4862 -3.8455 6.3373 45 1 4.3746 -7.4016 5.6847 46 1 6.0970 -7.0913 5.3602 47 1 6.1152 -10.1457 7.4176 48 1 2.8251 -1.8292 4.4833 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348206413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:43 Heat of formation + Delta-G solvation = 16.960183 kcal Electronic energy + Delta-G solvation = -23609.576055 eV Core-core repulsion = 20404.321927 eV Total energy + Delta-G solvation = -3205.254128 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.177 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.31552 -37.84362 -36.18279 -34.67969 -32.34206 -29.92670 -29.51010 -27.62352 -26.88185 -26.34071 -25.42429 -25.26624 -23.16596 -21.96511 -20.87691 -19.43305 -18.26365 -17.34680 -16.46049 -16.17361 -15.45377 -15.21426 -14.72387 -14.60828 -14.42680 -13.94493 -13.55710 -13.30521 -13.22492 -13.05515 -12.70052 -12.61353 -12.40927 -12.03216 -12.00915 -11.97228 -11.77931 -11.64662 -11.49874 -11.37129 -11.05272 -10.92212 -10.77138 -10.73175 -10.50403 -10.24919 -10.10529 -9.76441 -9.68847 -9.52964 -9.03400 -8.87035 -8.80101 -8.31451 -8.15140 -5.95684 -3.95695 0.58496 1.21757 1.60993 2.66460 3.32715 3.40637 3.43944 3.65324 4.31377 4.47037 4.51284 4.65884 4.68402 4.98119 5.13008 5.15999 5.23000 5.35712 5.36367 5.39623 5.40246 5.51846 5.60633 5.68762 5.77737 5.78306 5.79922 5.89665 5.95846 5.98743 6.07400 6.26061 6.33631 6.37609 6.51508 6.65792 6.78519 6.82841 7.20159 7.20370 7.26167 7.36267 7.54733 7.68409 7.71851 7.86144 8.04661 8.48901 9.09850 9.67083 11.15992 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.033907 B = 0.002478 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.579850 B =11296.378479 C =11584.038464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.020 4.020 3 C -0.147 4.147 4 C 0.055 3.945 5 N -0.465 5.465 6 C 0.075 3.925 7 C 0.157 3.843 8 H 0.059 0.941 9 C -0.127 4.127 10 N -0.680 5.680 11 C 0.070 3.930 12 C -0.057 4.057 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.033 3.967 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.253 4.253 25 S 0.112 5.888 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.337 0.663 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.013 0.987 46 H 0.016 0.984 47 H 0.258 0.742 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 20.956 -13.785 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.042 4.042 3 C -0.205 4.205 4 C -0.224 4.224 5 N -0.179 5.179 6 C -0.057 4.057 7 C 0.044 3.956 8 H 0.076 0.924 9 C -0.185 4.185 10 N -0.315 5.315 11 C -0.059 4.059 12 C -0.058 4.058 13 C -0.173 4.173 14 C -0.187 4.187 15 C -0.004 4.004 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.537 5.537 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.392 4.392 25 S 0.366 5.634 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.049 0.951 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.068 0.932 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.813 21.537 -13.879 27.436 hybrid contribution -0.094 -1.566 1.145 1.942 sum -9.907 19.971 -12.735 25.674 Atomic orbital electron populations 1.21928 0.93199 1.02753 1.02668 1.19816 0.96048 0.95405 0.92935 1.21925 1.01875 0.94066 1.02654 1.27070 0.99989 0.96471 0.98899 1.65989 1.13027 1.10353 1.28513 1.20341 0.99494 0.99436 0.86390 1.19951 0.93801 0.91122 0.90694 0.92358 1.21659 0.95740 1.02361 0.98755 1.60823 1.46468 1.21156 1.03023 1.22192 0.99545 0.85605 0.98547 1.20621 0.95042 0.99360 0.90729 1.21603 0.96884 0.97675 1.01176 1.21780 0.97523 0.97617 1.01741 1.19129 0.96553 0.87980 0.96773 1.21266 1.45737 0.93467 0.93912 0.92249 1.25022 0.95947 0.96316 0.97382 1.69975 1.49644 0.99626 1.34459 0.86610 0.77872 0.78082 0.85874 1.19793 1.21219 1.21155 1.26815 1.06751 1.00671 1.04916 1.83817 1.48755 1.29053 1.01734 0.91986 0.92184 0.91169 0.88148 0.91946 0.91185 0.92188 0.92012 0.92198 0.92297 0.84142 0.95658 0.91176 0.93943 0.92683 0.94085 0.94046 0.91587 0.95108 0.96898 0.96595 0.93227 0.80195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.09 37.16 0.34 -0.56 16 2 C -0.02 -0.15 3.35 -91.76 -0.31 -0.46 16 3 C -0.15 -0.89 9.09 37.16 0.34 -0.55 16 4 C 0.05 0.58 6.03 -13.45 -0.08 0.50 16 5 N -0.46 -6.07 10.34 -8.05 -0.08 -6.16 16 6 C 0.07 1.00 6.06 -84.22 -0.51 0.49 16 7 C 0.16 2.18 3.15 -68.86 -0.22 1.97 16 8 H 0.06 0.85 7.80 -51.93 -0.40 0.45 16 9 C -0.13 -1.69 9.32 37.16 0.35 -1.35 16 10 N -0.68 -10.03 5.35 -107.95 -0.58 -10.60 16 11 C 0.07 1.20 4.45 -3.82 -0.02 1.19 16 12 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 13 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 14 C -0.13 -2.38 7.89 37.16 0.29 -2.08 16 15 C 0.03 0.83 4.04 -27.89 -0.11 0.72 16 16 C -0.51 -13.79 7.65 -34.44 -0.26 -14.06 16 17 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C -0.25 -3.01 10.26 29.12 0.30 -2.71 16 25 S 0.11 1.09 22.53 -107.50 -2.42 -1.34 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.35 7.93 -51.93 -0.41 -0.06 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.35 7.93 -51.93 -0.41 -0.06 16 33 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 34 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.34 4.71 4.16 -39.29 -0.16 4.55 16 37 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 38 H 0.07 1.25 7.43 -51.93 -0.39 0.86 16 39 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 40 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 41 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.04 0.76 8.14 -51.92 -0.42 0.33 16 43 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 44 H 0.03 0.47 6.57 -51.93 -0.34 0.13 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.18 1.99 6.41 -52.49 -0.34 1.66 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -30.00 384.93 -9.78 -39.77 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.42 Total: 0.70 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 0.21 Total: -18.65 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.08 Total: -42.90 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.42 Total: -1.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.00 -9.78 -39.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348206413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.734 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds