Wall clock time and date at job start Fri Apr 10 2020 22:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 C 1.50709 * 109.46989 * 119.99439 * 2 1 3 5 5 N 1.29023 * 124.91372 * 119.99927 * 4 2 1 6 6 C 1.31784 * 117.12236 * 179.97438 * 5 4 2 7 7 C 1.50706 * 122.74680 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46642 * 295.00158 * 7 6 5 9 9 C 1.52999 * 109.47075 * 55.00168 * 7 6 5 10 10 N 1.46897 * 109.46791 * 175.00243 * 7 6 5 11 11 C 1.46900 * 110.99851 * 154.99783 * 10 7 6 12 12 C 1.52999 * 109.47333 * 179.97438 * 11 10 7 13 13 C 1.52998 * 109.47106 * 300.00563 * 12 11 10 14 14 C 1.53002 * 109.47130 * 59.99814 * 12 11 10 15 15 C 1.52997 * 109.47368 * 180.02562 * 12 11 10 16 16 C 1.50697 * 109.47128 * 179.97438 * 15 12 11 17 17 H 1.08003 * 120.00492 * 0.02562 * 16 15 12 18 18 C 1.37879 * 120.00000 * 179.97438 * 16 15 12 19 19 N 1.31508 * 119.99969 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99958 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47430 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47263 * 120.00257 * 20 18 16 23 23 H 1.48502 * 109.47254 * 239.99985 * 20 18 16 24 24 C 1.33639 * 114.50230 * 0.02562 * 6 5 4 25 25 S 1.70979 * 124.91513 * 300.00276 * 4 2 1 26 26 H 1.09003 * 109.46619 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47324 * 299.99925 * 1 2 3 28 28 H 1.08997 * 109.46804 * 60.00274 * 1 2 3 29 29 H 1.08993 * 109.47557 * 239.99642 * 2 1 3 30 30 H 1.08996 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46613 * 299.99836 * 3 2 1 32 32 H 1.09001 * 109.47324 * 59.99212 * 3 2 1 33 33 H 1.09000 * 109.46642 * 179.97438 * 9 7 6 34 34 H 1.08999 * 109.47025 * 300.00038 * 9 7 6 35 35 H 1.09001 * 109.46710 * 60.00218 * 9 7 6 36 36 H 1.00899 * 111.00159 * 31.04547 * 10 7 6 37 37 H 1.08999 * 109.47232 * 300.00212 * 11 10 7 38 38 H 1.09000 * 109.46766 * 60.00122 * 11 10 7 39 39 H 1.09004 * 109.47631 * 59.99370 * 13 12 11 40 40 H 1.08998 * 109.47599 * 179.97438 * 13 12 11 41 41 H 1.09008 * 109.46777 * 299.99666 * 13 12 11 42 42 H 1.09009 * 109.46774 * 60.00283 * 14 12 11 43 43 H 1.08997 * 109.47343 * 180.02562 * 14 12 11 44 44 H 1.09000 * 109.47300 * 300.00600 * 14 12 11 45 45 H 1.08998 * 109.46608 * 299.99759 * 15 12 11 46 46 H 1.08995 * 109.47286 * 59.99666 * 15 12 11 47 47 H 0.97007 * 120.00335 * 179.97438 * 19 18 16 48 48 H 1.07997 * 126.03746 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 1.2306 5 7 2.7773 -1.7638 1.2228 6 6 3.1287 -2.2598 2.3921 7 6 3.9956 -3.4847 2.5308 8 1 3.4672 -4.3507 2.1319 9 6 5.2973 -3.2789 1.7535 10 7 4.3027 -3.7091 3.9497 11 6 4.6052 -5.1237 4.2055 12 6 4.9198 -5.3176 5.6901 13 6 6.1284 -4.4604 6.0715 14 6 3.7107 -4.8951 6.5271 15 6 5.2355 -6.7907 5.9565 16 6 5.5460 -6.9815 7.4187 17 1 5.5204 -6.1367 8.0910 18 6 5.8619 -8.2350 7.8986 19 7 5.8927 -9.2638 7.0801 20 14 6.2475 -8.4713 9.7110 21 1 6.1456 -7.1668 10.4131 22 1 5.2782 -9.4283 10.3026 23 1 7.6247 -9.0070 9.8583 24 6 2.6533 -1.5876 3.4448 25 16 1.6976 -0.2368 2.8391 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9565 0.8899 33 1 5.9244 -4.1647 1.8542 34 1 5.0693 -3.1124 0.7007 35 1 5.8255 -2.4129 2.1524 36 1 3.5483 -3.3886 4.5380 37 1 3.7443 -5.7343 3.9334 38 1 5.4669 -5.4244 3.6095 39 1 5.9040 -3.4108 5.8817 40 1 6.3524 -4.5982 7.1293 41 1 6.9899 -4.7614 5.4752 42 1 2.8496 -5.5058 6.2554 43 1 3.9350 -5.0328 7.5849 44 1 3.4862 -3.8455 6.3373 45 1 4.3746 -7.4016 5.6847 46 1 6.0970 -7.0913 5.3602 47 1 6.1152 -10.1457 7.4176 48 1 2.8251 -1.8292 4.4833 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348206413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:42 Heat of formation + Delta-G solvation = 0.413605 kcal Electronic energy + Delta-G solvation = -23610.293569 eV Core-core repulsion = 20404.321927 eV Total energy + Delta-G solvation = -3205.971641 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.23824 -39.26351 -37.12718 -35.81870 -34.35208 -31.19828 -30.47267 -28.83477 -28.08080 -27.89568 -26.78181 -26.23835 -24.76441 -23.24020 -21.63391 -20.40294 -19.71422 -18.43671 -18.28002 -17.48410 -16.56611 -16.39129 -16.14301 -15.56192 -15.48063 -15.21824 -14.88137 -14.69779 -14.19254 -14.10291 -13.93387 -13.90409 -13.54617 -13.41501 -13.07458 -13.01495 -12.86898 -12.71383 -12.61444 -12.56512 -12.43316 -12.25787 -12.14954 -12.13607 -12.00689 -11.85373 -11.77840 -11.38373 -10.87555 -10.75031 -10.60835 -10.51014 -10.37324 -9.74221 -9.38076 -8.13775 -6.20560 -0.25899 0.41114 0.75999 1.40162 1.41283 1.53315 1.74934 2.43580 2.77855 3.20326 3.29418 3.72405 3.98021 4.08905 4.13816 4.15394 4.17812 4.22750 4.33879 4.37492 4.51474 4.62325 4.70967 4.74879 4.75855 4.88202 4.89475 4.92172 4.92815 4.95624 5.03511 5.07238 5.14667 5.21021 5.21947 5.30046 5.31707 5.31894 5.51898 5.54216 5.58868 5.64818 5.86884 5.92691 5.99549 6.35913 6.38806 6.78062 6.94751 7.46682 8.98798 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.033907 B = 0.002478 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.579850 B =11296.378479 C =11584.038464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.022 4.022 3 C -0.143 4.143 4 C 0.048 3.952 5 N -0.495 5.495 6 C 0.059 3.941 7 C 0.159 3.841 8 H 0.048 0.952 9 C -0.120 4.120 10 N -0.670 5.670 11 C 0.082 3.918 12 C -0.052 4.052 13 C -0.107 4.107 14 C -0.124 4.124 15 C 0.039 3.961 16 C -0.511 4.511 17 H 0.067 0.933 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.957 3.043 21 H -0.260 1.260 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.268 4.268 25 S 0.163 5.837 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.344 0.656 37 H 0.018 0.982 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.040 0.960 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.049 0.951 44 H 0.066 0.934 45 H -0.016 1.016 46 H -0.015 1.015 47 H 0.259 0.741 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 23.708 -13.363 29.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.230 4.230 5 N -0.210 5.210 6 C -0.073 4.073 7 C 0.046 3.954 8 H 0.066 0.934 9 C -0.178 4.178 10 N -0.306 5.306 11 C -0.047 4.047 12 C -0.053 4.053 13 C -0.164 4.164 14 C -0.181 4.181 15 C 0.001 3.999 16 C -0.549 4.549 17 H 0.085 0.915 18 C -0.203 4.203 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.184 1.184 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.408 4.408 25 S 0.418 5.582 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.166 0.834 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.002 0.998 46 H 0.003 0.997 47 H 0.068 0.932 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.892 24.321 -13.454 29.852 hybrid contribution 0.188 -2.360 0.935 2.546 sum -10.704 21.960 -12.519 27.451 Atomic orbital electron populations 1.21927 0.91876 1.02451 1.03966 1.19990 0.97038 0.95946 0.91474 1.21922 1.01240 0.93059 1.03943 1.27658 0.98919 0.95814 1.00580 1.65985 1.14543 1.11723 1.28741 1.20198 1.00337 0.99613 0.87170 1.19858 0.94189 0.91566 0.89743 0.93407 1.21580 0.95401 1.01860 0.98942 1.60741 1.46922 1.18926 1.03970 1.21897 0.98989 0.87240 0.96571 1.20466 0.96239 0.95791 0.92782 1.21508 0.96119 0.98899 0.99906 1.21704 0.96403 0.99766 1.00219 1.19015 0.93974 0.91362 0.95520 1.21636 1.44682 0.93647 0.94928 0.91492 1.25933 0.96054 0.96202 1.02086 1.70118 1.51033 1.00144 1.36672 0.85517 0.77509 0.78440 0.80312 1.18383 1.20884 1.20929 1.27001 1.07074 1.01610 1.05065 1.83596 1.47172 1.27148 1.00265 0.93075 0.91695 0.89096 0.88617 0.92941 0.89117 0.91712 0.92581 0.91824 0.92570 0.83380 0.96362 0.92031 0.91408 0.94133 0.95033 0.94464 0.93150 0.91534 0.99788 0.99671 0.93211 0.79492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.09 71.98 0.65 -0.78 16 2 C -0.02 -0.30 3.35 -11.53 -0.04 -0.34 16 3 C -0.14 -1.40 9.09 71.98 0.65 -0.74 16 4 C 0.05 0.95 6.03 88.52 0.53 1.49 16 5 N -0.50 -12.54 10.34 -179.39 -1.86 -14.40 16 6 C 0.06 1.50 6.06 41.52 0.25 1.76 16 7 C 0.16 4.36 3.15 44.17 0.14 4.50 16 8 H 0.05 1.41 7.80 -2.38 -0.02 1.40 16 9 C -0.12 -3.17 9.32 71.98 0.67 -2.50 16 10 N -0.67 -19.11 5.35 -495.45 -2.65 -21.76 16 11 C 0.08 2.86 4.45 86.30 0.38 3.24 16 12 C -0.05 -2.07 0.60 -52.18 -0.03 -2.11 16 13 C -0.11 -4.05 8.06 71.98 0.58 -3.47 16 14 C -0.12 -4.41 7.89 71.98 0.57 -3.84 16 15 C 0.04 2.02 4.04 29.85 0.12 2.14 16 16 C -0.51 -28.26 7.65 25.60 0.20 -28.06 16 17 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 18 C -0.01 -0.36 5.46 84.66 0.46 0.11 16 19 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 20 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 C -0.27 -5.91 10.26 66.78 0.69 -5.23 16 25 S 0.16 2.79 22.53 -56.49 -1.27 1.52 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.58 7.93 -2.39 -0.02 0.56 16 28 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.57 7.93 -2.39 -0.02 0.55 16 33 H 0.06 1.52 7.45 -2.39 -0.02 1.50 16 34 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.34 8.97 4.16 -89.69 -0.37 8.60 16 37 H 0.02 0.66 8.06 -2.39 -0.02 0.64 16 38 H 0.06 2.24 7.43 -2.39 -0.02 2.23 16 39 H 0.07 2.21 7.60 -2.38 -0.02 2.19 16 40 H 0.04 1.63 6.62 -2.39 -0.02 1.61 16 41 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.05 1.95 6.62 -2.39 -0.02 1.93 16 44 H 0.07 1.88 6.57 -2.39 -0.02 1.87 16 45 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 46 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 47 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 48 H 0.19 3.70 6.41 -2.91 -0.02 3.68 16 Total: -1.00 -65.57 384.93 2.92 -62.66 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.55 Total: 16.56 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 5.83 Total: -33.82 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -4.22 Total: -93.57 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.27 Total: 1.52 kcal Total: -65.57 2.92 -62.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348206413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.070 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds