Wall clock time and date at job start Fri Apr 10 2020 22:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35719 * 116.99796 * 2 1 4 4 C 1.38892 * 119.65841 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.14066 * 179.97438 * 4 3 2 6 6 C 1.50708 * 120.76995 * 180.02562 * 5 4 3 7 7 H 1.08992 * 109.47068 * 144.99797 * 6 5 4 8 8 C 1.52998 * 109.46843 * 264.99895 * 6 5 4 9 9 N 1.46906 * 109.46635 * 24.99800 * 6 5 4 10 10 C 1.46900 * 110.99517 * 155.00311 * 9 6 5 11 11 C 1.52999 * 109.47005 * 179.97438 * 10 9 6 12 12 C 1.53004 * 109.47187 * 300.00093 * 11 10 9 13 13 C 1.52998 * 109.46933 * 59.99963 * 11 10 9 14 14 C 1.52996 * 109.47287 * 179.97438 * 11 10 9 15 15 C 1.50705 * 109.47255 * 180.02562 * 14 11 10 16 16 H 1.07992 * 119.99782 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99993 * 180.02562 * 15 14 11 18 18 N 1.31518 * 120.00067 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00175 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47019 * 59.99681 * 19 17 15 21 21 H 1.48499 * 109.47516 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47314 * 299.99922 * 19 17 15 23 23 C 1.39000 * 118.46631 * 359.72997 * 5 4 3 24 24 F 1.35100 * 120.38183 * 180.26417 * 23 5 4 25 25 C 1.38250 * 119.23742 * 0.53451 * 23 5 4 26 26 N 1.31986 * 120.79725 * 359.45306 * 25 23 5 27 27 H 1.08995 * 109.47319 * 59.99493 * 1 2 3 28 28 H 1.09003 * 109.46785 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46734 * 299.99631 * 1 2 3 30 30 H 1.08001 * 120.42911 * 359.95426 * 4 3 2 31 31 H 1.09007 * 109.46942 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.47359 * 299.99803 * 8 6 5 33 33 H 1.08999 * 109.47063 * 59.99839 * 8 6 5 34 34 H 1.00898 * 110.99775 * 278.95390 * 9 6 5 35 35 H 1.09000 * 109.47188 * 299.99793 * 10 9 6 36 36 H 1.09004 * 109.47344 * 59.99526 * 10 9 6 37 37 H 1.09000 * 109.47072 * 59.99583 * 12 11 10 38 38 H 1.09000 * 109.46992 * 179.97438 * 12 11 10 39 39 H 1.09004 * 109.46678 * 299.99978 * 12 11 10 40 40 H 1.09000 * 109.47160 * 60.00069 * 13 11 10 41 41 H 1.09009 * 109.46888 * 179.97438 * 13 11 10 42 42 H 1.08996 * 109.47036 * 299.99703 * 13 11 10 43 43 H 1.09000 * 109.47196 * 300.00170 * 14 11 10 44 44 H 1.09005 * 109.47246 * 60.00248 * 14 11 10 45 45 H 0.97003 * 119.99899 * 180.02562 * 18 17 15 46 46 H 1.08002 * 119.60426 * 179.73453 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0496 2.5123 -0.0011 6 6 5.5524 2.6251 -0.0022 7 1 5.8513 3.4916 -0.5920 8 6 6.0527 2.7887 1.4344 9 7 6.1341 1.4098 -0.5880 10 6 7.4645 1.6807 -1.1489 11 6 8.0370 0.3944 -1.7477 12 6 8.1514 -0.6701 -0.6547 13 6 7.1094 -0.1094 -2.8552 14 6 9.4223 0.6766 -2.3325 15 6 9.9860 -0.5903 -2.9229 16 1 9.4135 -1.5052 -2.8844 17 6 11.2329 -0.5814 -3.5112 18 7 11.9302 0.5327 -3.5577 19 14 11.9319 -2.1518 -4.2424 20 1 11.0315 -2.6409 -5.3172 21 1 13.2764 -1.8779 -4.8101 22 1 12.0431 -3.1850 -3.1816 23 6 3.2513 3.6502 -0.0068 24 9 3.8129 4.8789 -0.0129 25 6 1.8759 3.5102 -0.0005 26 7 1.3184 2.3138 0.0000 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0222 0.3689 -0.0002 31 1 7.1397 2.8698 1.4336 32 1 5.6210 3.6903 1.8690 33 1 5.7537 1.9221 2.0241 34 1 6.1728 0.6642 0.0907 35 1 7.3830 2.4394 -1.9273 36 1 8.1254 2.0393 -0.3598 37 1 7.1643 -0.8710 -0.2384 38 1 8.5588 -1.5866 -1.0814 39 1 8.8122 -0.3111 0.1343 40 1 7.0279 0.6490 -3.6339 41 1 7.5175 -1.0256 -3.2822 42 1 6.1223 -0.3104 -2.4390 43 1 9.3404 1.4348 -3.1113 44 1 10.0834 1.0358 -1.5438 45 1 12.8073 0.5390 -3.9719 46 1 1.2500 4.3903 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348219639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:48 Heat of formation + Delta-G solvation = -61.286530 kcal Electronic energy + Delta-G solvation = -26026.486130 eV Core-core repulsion = 22251.625794 eV Total energy + Delta-G solvation = -3774.860336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.04236 -40.84570 -38.54478 -37.68787 -35.71975 -32.71065 -31.78062 -30.62121 -29.26813 -27.45503 -26.89343 -26.34677 -25.38292 -24.56557 -23.39152 -22.30703 -21.03259 -18.48593 -18.11502 -17.68094 -17.41436 -16.39664 -16.23185 -15.68014 -15.34641 -15.22750 -14.84415 -14.62178 -14.33803 -14.10448 -13.78125 -13.43850 -13.29846 -13.03341 -13.01184 -12.78896 -12.55335 -12.14518 -12.01349 -11.91216 -11.74669 -11.41386 -11.32784 -10.99710 -10.88907 -10.79152 -10.50324 -10.31145 -10.17119 -9.94878 -9.81142 -9.69806 -9.03591 -8.85801 -8.58675 -8.31618 -8.23821 -5.96356 -3.96594 0.79245 0.86463 2.82563 3.34751 3.37272 3.39521 3.41668 3.85526 3.96666 4.15404 4.47618 4.54901 4.66844 4.92908 4.98950 5.02085 5.06374 5.07249 5.32368 5.37030 5.39420 5.42476 5.57452 5.66415 5.68568 5.78435 5.90827 5.92122 6.02031 6.15763 6.23748 6.29659 6.47655 6.64100 6.76459 6.81902 6.95661 7.13296 7.19346 7.24581 7.32383 7.47080 7.54313 7.69456 7.84308 8.03667 8.47771 9.08556 9.66260 11.15265 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.002961 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.095135 B = 9454.803455 C =10353.408728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.303 6.303 3 C 0.309 3.691 4 C -0.136 4.136 5 C -0.019 4.019 6 C 0.119 3.881 7 H 0.097 0.903 8 C -0.176 4.176 9 N -0.678 5.678 10 C 0.070 3.930 11 C -0.058 4.058 12 C -0.129 4.129 13 C -0.116 4.116 14 C 0.034 3.966 15 C -0.508 4.508 16 H 0.059 0.941 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.010 3.990 24 F -0.130 7.130 25 C 0.111 3.889 26 N -0.522 5.522 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.156 0.844 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.342 0.658 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.015 0.985 44 H 0.013 0.987 45 H 0.259 0.741 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.004 4.282 10.427 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.130 3.870 4 C -0.157 4.157 5 C -0.028 4.028 6 C 0.008 3.992 7 H 0.115 0.885 8 C -0.235 4.235 9 N -0.310 5.310 10 C -0.058 4.058 11 C -0.058 4.058 12 C -0.186 4.186 13 C -0.174 4.174 14 C -0.003 4.003 15 C -0.546 4.546 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.012 4.012 24 F -0.109 7.109 25 C -0.046 4.046 26 N -0.246 5.246 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.174 0.826 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.162 0.838 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.069 0.931 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.931 4.101 9.755 24.350 hybrid contribution 1.747 -0.232 0.301 1.788 sum -20.184 3.869 10.056 22.879 Atomic orbital electron populations 1.22875 0.77208 1.03062 1.02391 1.86283 1.22868 1.24041 1.87780 1.19872 0.89426 0.84633 0.93032 1.20819 0.91255 0.99195 1.04446 1.20245 0.96861 0.91027 0.94618 1.20375 0.87970 0.95675 0.95164 0.88454 1.22448 1.02301 1.02571 0.96188 1.60657 1.25421 1.06382 1.38537 1.22171 0.86537 0.99320 0.97747 1.20636 0.97955 0.92211 0.95045 1.21775 0.98581 1.00332 0.97952 1.21606 0.97430 1.00894 0.97449 1.19113 0.88769 0.96968 0.95450 1.21195 1.01239 0.95640 1.36535 0.92332 1.25011 0.97240 0.95882 0.96424 1.69956 1.12490 1.26180 1.45138 0.86726 0.78181 0.83963 0.79534 1.20305 1.21457 1.20353 1.18390 0.92429 0.80556 1.09870 1.91499 1.85401 1.39691 1.94318 1.22348 0.90718 0.94954 0.96574 1.67309 1.40086 0.98096 1.19086 0.92243 0.88534 0.92357 0.82637 0.91194 0.91928 0.92057 0.83774 0.91365 0.95371 0.94851 0.91652 0.94046 0.94183 0.92651 0.93887 0.96681 0.96907 0.93102 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.36 16 2 O -0.30 -3.41 10.48 -18.86 -0.20 -3.60 16 3 C 0.31 3.68 7.49 -17.14 -0.13 3.55 16 4 C -0.14 -1.60 9.33 -39.29 -0.37 -1.97 16 5 C -0.02 -0.22 5.09 -104.28 -0.53 -0.75 16 6 C 0.12 1.41 2.63 -68.86 -0.18 1.23 16 7 H 0.10 1.23 7.52 -51.93 -0.39 0.84 16 8 C -0.18 -1.82 9.14 37.16 0.34 -1.48 16 9 N -0.68 -9.05 4.51 -107.95 -0.49 -9.53 16 10 C 0.07 1.14 4.45 -3.82 -0.02 1.13 16 11 C -0.06 -1.11 0.60 -154.51 -0.09 -1.21 16 12 C -0.13 -2.29 7.89 37.16 0.29 -2.00 16 13 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 14 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 15 C -0.51 -13.72 7.65 -34.44 -0.26 -13.99 16 16 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.01 0.11 7.28 -39.29 -0.29 -0.17 16 24 F -0.13 -1.49 16.69 2.25 0.04 -1.46 16 25 C 0.11 1.13 11.16 -17.48 -0.20 0.93 16 26 N -0.52 -5.94 9.21 -13.28 -0.12 -6.06 16 27 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.16 1.77 7.03 -52.49 -0.37 1.40 16 31 H 0.07 0.75 7.45 -51.93 -0.39 0.37 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.34 4.29 6.01 -39.29 -0.24 4.05 16 35 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 36 H 0.03 0.46 7.44 -51.93 -0.39 0.07 16 37 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 38 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 1.13 6.62 -51.92 -0.34 0.79 16 42 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -29.84 371.84 -7.01 -36.85 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.27 Total: 0.79 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.29 Total: -13.09 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.13 Total: -41.57 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.20 Total: -3.60 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.84 -7.01 -36.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348219639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.439 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds