Wall clock time and date at job start Fri Apr 10 2020 22:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35719 * 116.99796 * 2 1 4 4 C 1.38892 * 119.65841 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.14066 * 179.97438 * 4 3 2 6 6 C 1.50708 * 120.76995 * 180.02562 * 5 4 3 7 7 H 1.08992 * 109.47068 * 144.99797 * 6 5 4 8 8 C 1.52998 * 109.46843 * 264.99895 * 6 5 4 9 9 N 1.46906 * 109.46635 * 24.99800 * 6 5 4 10 10 C 1.46900 * 110.99517 * 155.00311 * 9 6 5 11 11 C 1.52999 * 109.47005 * 179.97438 * 10 9 6 12 12 C 1.53004 * 109.47187 * 300.00093 * 11 10 9 13 13 C 1.52998 * 109.46933 * 59.99963 * 11 10 9 14 14 C 1.52996 * 109.47287 * 179.97438 * 11 10 9 15 15 C 1.50705 * 109.47255 * 180.02562 * 14 11 10 16 16 H 1.07992 * 119.99782 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99993 * 180.02562 * 15 14 11 18 18 N 1.31518 * 120.00067 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00175 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47019 * 59.99681 * 19 17 15 21 21 H 1.48499 * 109.47516 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47314 * 299.99922 * 19 17 15 23 23 C 1.39000 * 118.46631 * 359.72997 * 5 4 3 24 24 F 1.35100 * 120.38183 * 180.26417 * 23 5 4 25 25 C 1.38250 * 119.23742 * 0.53451 * 23 5 4 26 26 N 1.31986 * 120.79725 * 359.45306 * 25 23 5 27 27 H 1.08995 * 109.47319 * 59.99493 * 1 2 3 28 28 H 1.09003 * 109.46785 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46734 * 299.99631 * 1 2 3 30 30 H 1.08001 * 120.42911 * 359.95426 * 4 3 2 31 31 H 1.09007 * 109.46942 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.47359 * 299.99803 * 8 6 5 33 33 H 1.08999 * 109.47063 * 59.99839 * 8 6 5 34 34 H 1.00898 * 110.99775 * 278.95390 * 9 6 5 35 35 H 1.09000 * 109.47188 * 299.99793 * 10 9 6 36 36 H 1.09004 * 109.47344 * 59.99526 * 10 9 6 37 37 H 1.09000 * 109.47072 * 59.99583 * 12 11 10 38 38 H 1.09000 * 109.46992 * 179.97438 * 12 11 10 39 39 H 1.09004 * 109.46678 * 299.99978 * 12 11 10 40 40 H 1.09000 * 109.47160 * 60.00069 * 13 11 10 41 41 H 1.09009 * 109.46888 * 179.97438 * 13 11 10 42 42 H 1.08996 * 109.47036 * 299.99703 * 13 11 10 43 43 H 1.09000 * 109.47196 * 300.00170 * 14 11 10 44 44 H 1.09005 * 109.47246 * 60.00248 * 14 11 10 45 45 H 0.97003 * 119.99899 * 180.02562 * 18 17 15 46 46 H 1.08002 * 119.60426 * 179.73453 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0496 2.5123 -0.0011 6 6 5.5524 2.6251 -0.0022 7 1 5.8513 3.4916 -0.5920 8 6 6.0527 2.7887 1.4344 9 7 6.1341 1.4098 -0.5880 10 6 7.4645 1.6807 -1.1489 11 6 8.0370 0.3944 -1.7477 12 6 8.1514 -0.6701 -0.6547 13 6 7.1094 -0.1094 -2.8552 14 6 9.4223 0.6766 -2.3325 15 6 9.9860 -0.5903 -2.9229 16 1 9.4135 -1.5052 -2.8844 17 6 11.2329 -0.5814 -3.5112 18 7 11.9302 0.5327 -3.5577 19 14 11.9319 -2.1518 -4.2424 20 1 11.0315 -2.6409 -5.3172 21 1 13.2764 -1.8779 -4.8101 22 1 12.0431 -3.1850 -3.1816 23 6 3.2513 3.6502 -0.0068 24 9 3.8129 4.8789 -0.0129 25 6 1.8759 3.5102 -0.0005 26 7 1.3184 2.3138 0.0000 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0222 0.3689 -0.0002 31 1 7.1397 2.8698 1.4336 32 1 5.6210 3.6903 1.8690 33 1 5.7537 1.9221 2.0241 34 1 6.1728 0.6642 0.0907 35 1 7.3830 2.4394 -1.9273 36 1 8.1254 2.0393 -0.3598 37 1 7.1643 -0.8710 -0.2384 38 1 8.5588 -1.5866 -1.0814 39 1 8.8122 -0.3111 0.1343 40 1 7.0279 0.6490 -3.6339 41 1 7.5175 -1.0256 -3.2822 42 1 6.1223 -0.3104 -2.4390 43 1 9.3404 1.4348 -3.1113 44 1 10.0834 1.0358 -1.5438 45 1 12.8073 0.5390 -3.9719 46 1 1.2500 4.3903 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348219639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:47 Heat of formation + Delta-G solvation = -79.760134 kcal Electronic energy + Delta-G solvation = -26027.287205 eV Core-core repulsion = 22251.625794 eV Total energy + Delta-G solvation = -3775.661412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.90906 -41.68102 -39.64596 -38.75427 -36.98695 -34.56684 -33.00452 -31.47374 -30.34867 -28.78016 -28.13540 -27.86814 -26.75602 -25.49880 -24.68565 -23.73075 -21.97621 -19.77064 -19.06417 -18.56936 -18.47044 -18.28758 -17.20462 -16.67973 -16.51428 -16.33183 -16.11641 -15.79398 -15.42624 -15.28269 -14.66638 -14.63909 -14.53188 -14.42033 -14.17122 -13.87066 -13.74851 -13.59187 -13.38399 -12.93074 -12.77461 -12.75045 -12.65823 -12.47301 -12.33133 -12.18187 -12.11065 -12.05712 -11.91876 -11.37012 -10.90360 -10.84570 -10.73946 -10.60799 -10.48488 -9.45111 -9.34079 -8.12756 -6.19473 -0.04532 0.00085 1.41792 1.43764 1.50955 2.07462 2.44597 2.52483 2.93298 3.13010 3.21358 3.26916 3.59298 3.82775 4.02744 4.11856 4.17542 4.22199 4.27263 4.39675 4.42636 4.47358 4.54553 4.62240 4.69976 4.78517 4.79613 4.85642 4.89435 4.98110 5.04938 5.10645 5.14526 5.24319 5.25079 5.35275 5.54333 5.56624 5.61133 5.66747 5.89319 5.94365 6.00328 6.17257 6.37987 6.46210 6.64076 6.95834 7.47832 8.99359 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.002961 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.095135 B = 9454.803455 C =10353.408728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.316 6.316 3 C 0.301 3.699 4 C -0.144 4.144 5 C -0.022 4.022 6 C 0.122 3.878 7 H 0.087 0.913 8 C -0.170 4.170 9 N -0.673 5.673 10 C 0.084 3.916 11 C -0.054 4.054 12 C -0.122 4.122 13 C -0.107 4.107 14 C 0.040 3.960 15 C -0.514 4.514 16 H 0.066 0.934 17 C -0.004 4.004 18 N -0.938 5.938 19 Si 0.954 3.046 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.001 3.999 24 F -0.134 7.134 25 C 0.117 3.883 26 N -0.528 5.528 27 H 0.057 0.943 28 H 0.121 0.879 29 H 0.061 0.939 30 H 0.159 0.841 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.350 0.650 35 H 0.055 0.945 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.027 0.973 41 H 0.037 0.963 42 H 0.068 0.932 43 H -0.017 1.017 44 H -0.014 1.014 45 H 0.259 0.741 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.899 3.282 11.292 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.223 6.223 3 C 0.123 3.877 4 C -0.165 4.165 5 C -0.031 4.031 6 C 0.012 3.988 7 H 0.105 0.895 8 C -0.229 4.229 9 N -0.306 5.306 10 C -0.045 4.045 11 C -0.055 4.055 12 C -0.180 4.180 13 C -0.165 4.165 14 C 0.003 3.997 15 C -0.552 4.552 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.580 5.580 19 Si 0.780 3.220 20 H -0.194 1.194 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.021 4.021 24 F -0.112 7.112 25 C -0.039 4.039 26 N -0.252 5.252 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.080 0.920 30 H 0.176 0.824 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.001 0.999 44 H 0.004 0.996 45 H 0.068 0.932 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -23.852 3.084 10.632 26.295 hybrid contribution 2.251 0.126 0.044 2.255 sum -21.601 3.210 10.677 24.308 Atomic orbital electron populations 1.23099 0.75626 1.04765 1.02438 1.86267 1.24511 1.23859 1.87626 1.20030 0.89664 0.85054 0.92972 1.20849 0.91445 0.99204 1.04994 1.20203 0.96488 0.91410 0.95020 1.20328 0.88265 0.94413 0.95841 0.89467 1.22386 1.01899 1.03439 0.95202 1.60537 1.23298 1.07443 1.39288 1.21835 0.88005 0.97188 0.97423 1.20486 0.94901 0.94322 0.95743 1.21690 1.00553 0.98573 0.97157 1.21512 0.98455 0.99527 0.96982 1.18997 0.91724 0.95235 0.93754 1.21605 1.01286 0.96583 1.35752 0.91583 1.25902 0.97913 0.99104 0.97143 1.70102 1.12900 1.28481 1.46481 0.85659 0.77293 0.80069 0.79001 1.19445 1.21465 1.19189 1.18489 0.92906 0.80288 1.10447 1.91492 1.85512 1.39824 1.94405 1.22797 0.90664 0.95497 0.94970 1.67383 1.40162 0.98331 1.19343 0.92409 0.86096 0.92044 0.82378 0.91703 0.91199 0.91019 0.82885 0.92603 0.95436 0.91230 0.93553 0.94206 0.95394 0.94342 0.91306 0.99913 0.99579 0.93208 0.78635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 113.37 1.18 1.67 16 2 O -0.32 -6.55 10.48 -90.40 -0.95 -7.50 16 3 C 0.30 6.66 7.49 84.79 0.63 7.29 16 4 C -0.14 -3.13 9.33 22.46 0.21 -2.92 16 5 C -0.02 -0.49 5.09 -19.65 -0.10 -0.59 16 6 C 0.12 2.73 2.63 44.17 0.12 2.84 16 7 H 0.09 2.15 7.52 -2.39 -0.02 2.14 16 8 C -0.17 -3.25 9.14 71.98 0.66 -2.59 16 9 N -0.67 -16.91 4.51 -495.43 -2.23 -19.15 16 10 C 0.08 2.72 4.45 86.30 0.38 3.10 16 11 C -0.05 -2.07 0.60 -52.18 -0.03 -2.10 16 12 C -0.12 -4.18 7.89 71.98 0.57 -3.62 16 13 C -0.11 -4.01 8.06 71.98 0.58 -3.42 16 14 C 0.04 2.07 4.04 29.85 0.12 2.19 16 15 C -0.51 -28.20 7.65 25.60 0.20 -28.00 16 16 H 0.07 3.46 5.68 -2.91 -0.02 3.45 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 18 N -0.94 -57.29 13.29 21.45 0.28 -57.01 16 19 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 C 0.00 0.02 7.28 22.46 0.16 0.18 16 24 F -0.13 -2.88 16.69 44.97 0.75 -2.13 16 25 C 0.12 2.14 11.16 84.67 0.95 3.08 16 26 N -0.53 -11.00 9.21 -308.78 -2.84 -13.85 16 27 H 0.06 0.82 8.10 -2.39 -0.02 0.80 16 28 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 30 H 0.16 3.27 7.03 -2.91 -0.02 3.25 16 31 H 0.06 1.31 7.45 -2.38 -0.02 1.29 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 34 H 0.35 7.89 6.01 -89.70 -0.54 7.35 16 35 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 36 H 0.03 0.89 7.44 -2.38 -0.02 0.87 16 37 H 0.07 1.86 6.57 -2.39 -0.02 1.85 16 38 H 0.05 1.75 6.62 -2.39 -0.02 1.74 16 39 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 1.54 6.62 -2.38 -0.02 1.52 16 42 H 0.07 2.20 7.60 -2.39 -0.02 2.18 16 43 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 44 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 45 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -64.94 371.84 3.56 -61.38 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.44 Total: 14.54 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 6.08 Total: -22.65 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -4.79 Total: -90.00 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.95 Total: -7.50 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.75 Total: -2.13 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -64.94 3.56 -61.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348219639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.376 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds